HEADER HYDROLASE 26-NOV-12 4I3E TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL IMPASE - I COMPLEXED WITH TITLE 2 PRODUCTS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL MONOPHOSPHATASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.25; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 282459; SOURCE 4 STRAIN: MSSA476; SOURCE 5 GENE: SAS2203; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS IMPASE SPECIFIC PENTA LAYERED SANDWICH, ALPHA/BETA STRUCTURE, FIG KEYWDS 2 SUPERFAMILY, DUAL SPECIFIC IMPASE/NADP(H) PHOSPHATASE, MAGNESIUM KEYWDS 3 BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BHATTACHARYYA,A.DUTTA,D.DUTTA,A.K.DAS REVDAT 2 20-MAR-24 4I3E 1 REMARK SEQADV LINK REVDAT 1 18-DEC-13 4I3E 0 JRNL AUTH S.BHATTACHARYYA,A.DUTTA,D.DUTTA,A.K.DAS JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCAL IMPASE - I COMPLEXED JRNL TITL 2 WITH PRODUCTS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 16737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1076 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.359 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.240 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.252 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4280 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4116 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5784 ; 1.704 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9486 ; 0.864 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 520 ; 7.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;40.228 ;25.758 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 774 ;20.210 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.006 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 639 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4811 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 969 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4I3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16765 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.599 REMARK 200 RESOLUTION RANGE LOW (A) : 70.463 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : 0.34700 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M HEPES, 20% (W/V) PEG REMARK 280 3350, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.16350 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.46250 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.16350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.46250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ILE A 77 REMARK 465 THR A 78 REMARK 465 ASN A 79 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 37 NE CZ NH1 NH2 REMARK 470 ARG A 39 CZ NH1 NH2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 ARG B 37 NE CZ NH1 NH2 REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 470 THR B 78 OG1 CG2 REMARK 470 ASN B 79 CG OD1 ND2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 PO4 A 302 MG MG A 304 1.50 REMARK 500 O PRO A 115 NH1 ARG A 133 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR B 61 OE2 GLU B 145 3555 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 36 -114.23 -101.11 REMARK 500 ALA A 75 104.18 168.78 REMARK 500 ALA A 199 150.00 -171.70 REMARK 500 ASN A 204 60.91 -158.08 REMARK 500 ALA A 231 126.59 129.22 REMARK 500 ALA A 238 157.21 173.55 REMARK 500 TYR A 264 130.51 12.25 REMARK 500 THR B 5 124.48 59.85 REMARK 500 LYS B 36 -91.20 -129.72 REMARK 500 GLU B 71 43.61 -92.51 REMARK 500 MET B 76 -144.11 -47.19 REMARK 500 ILE B 77 -153.83 87.94 REMARK 500 THR B 78 -122.50 -112.75 REMARK 500 ASN B 140 28.85 44.00 REMARK 500 SER B 149 127.95 -37.00 REMARK 500 ASN B 204 68.17 -163.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 4 THR A 5 -141.33 REMARK 500 THR A 5 LEU A 6 146.88 REMARK 500 GLY B 237 ALA B 238 146.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE1 REMARK 620 2 PO4 A 302 O1 78.2 REMARK 620 3 PO4 A 302 O4 72.8 53.3 REMARK 620 4 HOH A 403 O 88.1 133.3 80.1 REMARK 620 5 HOH A 404 O 170.1 95.3 109.4 101.8 REMARK 620 6 HOH A 405 O 80.4 109.0 150.2 112.3 94.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE2 REMARK 620 2 ASP A 88 OD1 94.5 REMARK 620 3 ILE A 90 O 156.9 97.1 REMARK 620 4 PO4 A 302 O4 93.8 156.2 83.4 REMARK 620 5 PO4 A 302 O3 105.1 97.1 93.2 59.2 REMARK 620 6 HOH A 401 O 74.4 104.1 83.4 99.5 158.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 ASP A 91 OD1 83.4 REMARK 620 3 ASP A 209 OD1 89.0 83.2 REMARK 620 4 GOL A 303 O2 168.2 91.6 79.7 REMARK 620 5 HOH A 402 O 97.5 173.4 90.3 86.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 70 OE1 REMARK 620 2 PO4 B 301 O2 100.0 REMARK 620 3 PO4 B 301 O4 96.7 64.6 REMARK 620 4 HOH B 402 O 78.3 157.2 92.8 REMARK 620 5 HOH B 403 O 157.3 98.7 102.9 89.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 70 OE2 REMARK 620 2 ASP B 88 OD1 80.0 REMARK 620 3 ILE B 90 O 147.8 78.8 REMARK 620 4 PO4 B 301 O4 100.7 165.9 105.8 REMARK 620 5 PO4 B 301 O1 97.0 96.9 109.4 69.0 REMARK 620 6 HOH B 401 O 71.7 83.7 82.0 110.0 168.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 88 OD2 REMARK 620 2 ASP B 91 OD1 95.2 REMARK 620 3 ASP B 209 OD1 92.0 113.2 REMARK 620 4 PO4 B 301 O1 93.4 103.8 141.8 REMARK 620 5 GOL B 303 O2 163.9 99.9 87.1 77.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QMF RELATED DB: PDB REMARK 900 RELATED ID: 3RYD RELATED DB: PDB DBREF 4I3E A 1 265 UNP Q6G709 Q6G709_STAAS 1 265 DBREF 4I3E B 1 265 UNP Q6G709 Q6G709_STAAS 1 265 SEQADV 4I3E HIS A -5 UNP Q6G709 EXPRESSION TAG SEQADV 4I3E HIS A -4 UNP Q6G709 EXPRESSION TAG SEQADV 4I3E HIS A -3 UNP Q6G709 EXPRESSION TAG SEQADV 4I3E HIS A -2 UNP Q6G709 EXPRESSION TAG SEQADV 4I3E HIS A -1 UNP Q6G709 EXPRESSION TAG SEQADV 4I3E HIS A 0 UNP Q6G709 EXPRESSION TAG SEQADV 4I3E HIS B -5 UNP Q6G709 EXPRESSION TAG SEQADV 4I3E HIS B -4 UNP Q6G709 EXPRESSION TAG SEQADV 4I3E HIS B -3 UNP Q6G709 EXPRESSION TAG SEQADV 4I3E HIS B -2 UNP Q6G709 EXPRESSION TAG SEQADV 4I3E HIS B -1 UNP Q6G709 EXPRESSION TAG SEQADV 4I3E HIS B 0 UNP Q6G709 EXPRESSION TAG SEQRES 1 A 271 HIS HIS HIS HIS HIS HIS MET THR ASP LYS THR LEU GLN SEQRES 2 A 271 GLN ILE ASP LYS LEU ILE CYS SER TRP LEU LYS GLN ILE SEQRES 3 A 271 ASP ASN VAL ILE PRO GLN LEU ILE MET GLU MET THR THR SEQRES 4 A 271 GLU THR LYS ARG HIS ARG PHE ASP LEU VAL THR ASN VAL SEQRES 5 A 271 ASP LYS GLN ILE GLN GLN GLN PHE GLN GLN PHE LEU ALA SEQRES 6 A 271 THR TYR PHE PRO GLU HIS GLN LEU LEU ALA GLU GLU LYS SEQRES 7 A 271 SER ASN ALA MET ILE THR ASN GLU ILE ASN HIS LEU TRP SEQRES 8 A 271 ILE MET ASP PRO ILE ASP GLY THR ALA ASN LEU VAL LYS SEQRES 9 A 271 GLN GLN GLU ASP TYR CYS ILE ILE LEU ALA TYR PHE TYR SEQRES 10 A 271 GLU GLY LYS PRO MET LEU SER TYR VAL TYR ASP TYR PRO SEQRES 11 A 271 HIS LYS LYS LEU TYR LYS ALA ILE ARG GLY GLU GLY ALA SEQRES 12 A 271 PHE CYS ASN GLY ILE LYS MET GLU GLU PRO PRO SER LEU SEQRES 13 A 271 LYS LEU GLU ASP ALA ILE ILE SER PHE ASN ALA GLN VAL SEQRES 14 A 271 MET ASN LEU ASP THR VAL GLN ASP LEU PHE ASP ALA SER SEQRES 15 A 271 PHE SER TYR ARG LEU VAL GLY ALA CYS GLY LEU ASP SER SEQRES 16 A 271 MET ARG VAL ALA LYS GLY GLN PHE GLY ALA HIS ILE ASN SEQRES 17 A 271 THR ASN PRO LYS PRO TRP ASP ILE ALA ALA GLN PHE LEU SEQRES 18 A 271 PHE ALA GLU LEU LEU ASN LEU LYS MET THR THR LEU ASP SEQRES 19 A 271 GLY LYS ALA ILE ASP HIS LEU LYS GLY ALA PRO PHE ILE SEQRES 20 A 271 ILE SER ASN LYS ALA CYS HIS GLU THR VAL LEU LYS ILE SEQRES 21 A 271 LEU ASN ALA ASN GLY GLY TYR GLN LYS TYR ARG SEQRES 1 B 271 HIS HIS HIS HIS HIS HIS MET THR ASP LYS THR LEU GLN SEQRES 2 B 271 GLN ILE ASP LYS LEU ILE CYS SER TRP LEU LYS GLN ILE SEQRES 3 B 271 ASP ASN VAL ILE PRO GLN LEU ILE MET GLU MET THR THR SEQRES 4 B 271 GLU THR LYS ARG HIS ARG PHE ASP LEU VAL THR ASN VAL SEQRES 5 B 271 ASP LYS GLN ILE GLN GLN GLN PHE GLN GLN PHE LEU ALA SEQRES 6 B 271 THR TYR PHE PRO GLU HIS GLN LEU LEU ALA GLU GLU LYS SEQRES 7 B 271 SER ASN ALA MET ILE THR ASN GLU ILE ASN HIS LEU TRP SEQRES 8 B 271 ILE MET ASP PRO ILE ASP GLY THR ALA ASN LEU VAL LYS SEQRES 9 B 271 GLN GLN GLU ASP TYR CYS ILE ILE LEU ALA TYR PHE TYR SEQRES 10 B 271 GLU GLY LYS PRO MET LEU SER TYR VAL TYR ASP TYR PRO SEQRES 11 B 271 HIS LYS LYS LEU TYR LYS ALA ILE ARG GLY GLU GLY ALA SEQRES 12 B 271 PHE CYS ASN GLY ILE LYS MET GLU GLU PRO PRO SER LEU SEQRES 13 B 271 LYS LEU GLU ASP ALA ILE ILE SER PHE ASN ALA GLN VAL SEQRES 14 B 271 MET ASN LEU ASP THR VAL GLN ASP LEU PHE ASP ALA SER SEQRES 15 B 271 PHE SER TYR ARG LEU VAL GLY ALA CYS GLY LEU ASP SER SEQRES 16 B 271 MET ARG VAL ALA LYS GLY GLN PHE GLY ALA HIS ILE ASN SEQRES 17 B 271 THR ASN PRO LYS PRO TRP ASP ILE ALA ALA GLN PHE LEU SEQRES 18 B 271 PHE ALA GLU LEU LEU ASN LEU LYS MET THR THR LEU ASP SEQRES 19 B 271 GLY LYS ALA ILE ASP HIS LEU LYS GLY ALA PRO PHE ILE SEQRES 20 B 271 ILE SER ASN LYS ALA CYS HIS GLU THR VAL LEU LYS ILE SEQRES 21 B 271 LEU ASN ALA ASN GLY GLY TYR GLN LYS TYR ARG HET MG A 301 1 HET PO4 A 302 5 HET GOL A 303 6 HET MG A 304 1 HET MG A 305 1 HET PO4 B 301 5 HET MG B 302 1 HET GOL B 303 6 HET MG B 304 1 HET MG B 305 1 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 6(MG 2+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 13 HOH *102(H2 O) HELIX 1 1 THR A 5 GLU A 30 1 26 HELIX 2 2 ASN A 45 PHE A 62 1 18 HELIX 3 3 GLY A 92 GLN A 100 1 9 HELIX 4 4 LYS A 151 ASP A 154 5 4 HELIX 5 5 ASN A 165 SER A 176 1 12 HELIX 6 6 ALA A 184 LYS A 194 1 11 HELIX 7 7 LYS A 206 ALA A 211 1 6 HELIX 8 8 ALA A 212 ASN A 221 1 10 HELIX 9 9 CYS A 247 ALA A 257 1 11 HELIX 10 10 ASN A 258 GLY A 260 5 3 HELIX 11 11 THR B 5 ILE B 20 1 16 HELIX 12 12 VAL B 23 GLU B 30 1 8 HELIX 13 13 ASN B 45 PHE B 62 1 18 HELIX 14 14 GLY B 92 GLN B 100 1 9 HELIX 15 15 LYS B 151 ASP B 154 5 4 HELIX 16 16 ASN B 165 SER B 176 1 12 HELIX 17 17 ALA B 184 LYS B 194 1 11 HELIX 18 18 LYS B 206 ALA B 211 1 6 HELIX 19 19 ALA B 212 LEU B 220 1 9 HELIX 20 20 CYS B 247 ALA B 257 1 11 SHEET 1 A 2 THR A 33 THR A 35 0 SHEET 2 A 2 LEU A 42 THR A 44 -1 O VAL A 43 N GLU A 34 SHEET 1 B 7 GLN A 66 ALA A 69 0 SHEET 2 B 7 HIS A 83 ASP A 91 1 O TRP A 85 N LEU A 68 SHEET 3 B 7 CYS A 104 TYR A 111 -1 O PHE A 110 N LEU A 84 SHEET 4 B 7 LYS A 114 ASP A 122 -1 O TYR A 119 N LEU A 107 SHEET 5 B 7 LYS A 127 ILE A 132 -1 O TYR A 129 N VAL A 120 SHEET 6 B 7 GLY A 136 CYS A 139 -1 O GLY A 136 N ILE A 132 SHEET 7 B 7 ILE A 142 LYS A 143 -1 O ILE A 142 N CYS A 139 SHEET 1 C 5 SER A 178 ARG A 180 0 SHEET 2 C 5 ILE A 156 SER A 158 1 N ILE A 157 O SER A 178 SHEET 3 C 5 ALA A 199 ASN A 202 1 O ILE A 201 N SER A 158 SHEET 4 C 5 PHE A 240 SER A 243 -1 O PHE A 240 N ASN A 202 SHEET 5 C 5 LYS A 223 THR A 226 -1 N LYS A 223 O SER A 243 SHEET 1 D 2 THR B 33 THR B 35 0 SHEET 2 D 2 LEU B 42 THR B 44 -1 O VAL B 43 N GLU B 34 SHEET 1 E 7 GLN B 66 ALA B 69 0 SHEET 2 E 7 HIS B 83 ASP B 91 1 O TRP B 85 N GLN B 66 SHEET 3 E 7 CYS B 104 TYR B 111 -1 O CYS B 104 N ASP B 91 SHEET 4 E 7 LYS B 114 ASP B 122 -1 O LEU B 117 N TYR B 109 SHEET 5 E 7 LYS B 127 ILE B 132 -1 O LYS B 127 N ASP B 122 SHEET 6 E 7 GLY B 136 CYS B 139 -1 O PHE B 138 N LYS B 130 SHEET 7 E 7 ILE B 142 LYS B 143 -1 O ILE B 142 N CYS B 139 SHEET 1 F 5 SER B 178 TYR B 179 0 SHEET 2 F 5 ILE B 156 SER B 158 1 N ILE B 157 O SER B 178 SHEET 3 F 5 ALA B 199 ASN B 202 1 O ILE B 201 N SER B 158 SHEET 4 F 5 PHE B 240 SER B 243 -1 O PHE B 240 N ASN B 202 SHEET 5 F 5 LYS B 223 THR B 226 -1 N LYS B 223 O SER B 243 LINK OE1 GLU A 70 MG MG A 301 1555 1555 2.35 LINK OE2 GLU A 70 MG MG A 305 1555 1555 1.96 LINK OD2 ASP A 88 MG MG A 304 1555 1555 2.08 LINK OD1 ASP A 88 MG MG A 305 1555 1555 1.81 LINK O ILE A 90 MG MG A 305 1555 1555 2.17 LINK OD1 ASP A 91 MG MG A 304 1555 1555 2.29 LINK OD1 ASP A 209 MG MG A 304 1555 1555 1.96 LINK MG MG A 301 O1 PO4 A 302 1555 1555 2.71 LINK MG MG A 301 O4 PO4 A 302 1555 1555 2.79 LINK MG MG A 301 O HOH A 403 1555 1555 2.03 LINK MG MG A 301 O HOH A 404 1555 1555 2.14 LINK MG MG A 301 O HOH A 405 1555 1555 2.05 LINK O4 PO4 A 302 MG MG A 305 1555 1555 2.05 LINK O3 PO4 A 302 MG MG A 305 1555 1555 2.82 LINK O2 GOL A 303 MG MG A 304 1555 1555 2.57 LINK MG MG A 304 O HOH A 402 1555 1555 2.07 LINK MG MG A 305 O HOH A 401 1555 1555 1.98 LINK OE1 GLU B 70 MG MG B 302 1555 1555 2.18 LINK OE2 GLU B 70 MG MG B 305 1555 1555 2.26 LINK OD2 ASP B 88 MG MG B 304 1555 1555 2.07 LINK OD1 ASP B 88 MG MG B 305 1555 1555 2.15 LINK O ILE B 90 MG MG B 305 1555 1555 1.88 LINK OD1 ASP B 91 MG MG B 304 1555 1555 2.02 LINK OD1 ASP B 209 MG MG B 304 1555 1555 1.98 LINK O2 PO4 B 301 MG MG B 302 1555 1555 2.21 LINK O4 PO4 B 301 MG MG B 302 1555 1555 2.43 LINK O1 PO4 B 301 MG MG B 304 1555 1555 1.74 LINK O4 PO4 B 301 MG MG B 305 1555 1555 1.97 LINK O1 PO4 B 301 MG MG B 305 1555 1555 2.45 LINK MG MG B 302 O HOH B 402 1555 1555 2.36 LINK MG MG B 302 O HOH B 403 1555 1555 2.74 LINK O2 GOL B 303 MG MG B 304 1555 1555 2.12 LINK MG MG B 305 O HOH B 401 1555 1555 2.23 CISPEP 1 ALA A 75 MET A 76 0 -11.41 CISPEP 2 TYR A 264 ARG A 265 0 22.35 CISPEP 3 ILE B 77 THR B 78 0 14.03 SITE 1 AC1 7 LYS A 36 LEU A 42 GLU A 70 PO4 A 302 SITE 2 AC1 7 HOH A 403 HOH A 404 HOH A 405 SITE 1 AC2 14 GLU A 70 ASP A 88 ILE A 90 ASP A 91 SITE 2 AC2 14 GLY A 92 THR A 93 ASP A 209 MG A 301 SITE 3 AC2 14 GOL A 303 MG A 304 MG A 305 HOH A 401 SITE 4 AC2 14 HOH A 402 HOH A 406 SITE 1 AC3 7 ASP A 91 GLY A 183 ALA A 184 CYS A 185 SITE 2 AC3 7 ASP A 209 PO4 A 302 MG A 304 SITE 1 AC4 7 ASP A 88 ASP A 91 ASP A 209 PO4 A 302 SITE 2 AC4 7 GOL A 303 MG A 305 HOH A 402 SITE 1 AC5 7 GLU A 70 ASP A 88 ILE A 90 ASP A 91 SITE 2 AC5 7 PO4 A 302 MG A 304 HOH A 401 SITE 1 AC6 11 GLU B 70 ASP B 88 ILE B 90 ASP B 91 SITE 2 AC6 11 GLY B 92 THR B 93 ASP B 209 MG B 302 SITE 3 AC6 11 GOL B 303 MG B 304 MG B 305 SITE 1 AC7 4 GLU B 70 PO4 B 301 HOH B 402 HOH B 403 SITE 1 AC8 7 ASP B 91 GLY B 183 ALA B 184 CYS B 185 SITE 2 AC8 7 ASP B 209 PO4 B 301 MG B 304 SITE 1 AC9 5 ASP B 88 ASP B 91 ASP B 209 PO4 B 301 SITE 2 AC9 5 GOL B 303 SITE 1 BC1 7 GLU B 70 ASP B 88 ILE B 90 ASP B 91 SITE 2 BC1 7 THR B 93 PO4 B 301 HOH B 401 CRYST1 60.327 62.510 140.925 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016576 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007096 0.00000