HEADER VIRAL PROTEIN/INHIBITOR 28-NOV-12 4I53 TITLE CRYSTAL STRUCTURE OF CLADE C1086 HIV-1 GP120 CORE IN COMPLEX WITH DMJ- TITLE 2 II-121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 GLYCOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: C1086; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS HIV, GP120, ENTRY INHIBITOR, DMJ-II-121, CD4-MIMETIC, VIRAL PROTEIN- KEYWDS 2 INHIBITOR COMPLEX, C1086, EXTRACELLULAR EXPDTA X-RAY DIFFRACTION AUTHOR M.LE-KHAC,W.A.HENDRICKSON REVDAT 3 26-MAY-21 4I53 1 SOURCE HETSYN REVDAT 2 29-JUL-20 4I53 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 29-MAY-13 4I53 0 JRNL AUTH J.M.LALONDE,M.LE-KHAC,D.M.JONES,J.R.COURTER,J.PARK,A.SCHON, JRNL AUTH 2 A.M.PRINCIOTTO,X.WU,J.R.MASCOLA,E.FREIRE,J.SODROSKI, JRNL AUTH 3 N.MADANI,W.A.HENDRICKSON,A.B.SMITH JRNL TITL STRUCTURE-BASED DESIGN AND SYNTHESIS OF AN HIV-1 ENTRY JRNL TITL 2 INHIBITOR EXPLOITING X-RAY AND THERMODYNAMIC JRNL TITL 3 CHARACTERIZATION. JRNL REF ACS MED CHEM LETT V. 4 338 2013 JRNL REFN ISSN 1948-5875 JRNL PMID 23667716 JRNL DOI 10.1021/ML300407Y REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 28780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8214 - 4.9936 1.00 3672 143 0.2070 0.1969 REMARK 3 2 4.9936 - 3.9665 1.00 3540 135 0.2085 0.2170 REMARK 3 3 3.9665 - 3.4660 1.00 3518 144 0.2447 0.3034 REMARK 3 4 3.4660 - 3.1495 1.00 3481 129 0.2698 0.2913 REMARK 3 5 3.1495 - 2.9240 1.00 3493 137 0.3008 0.3250 REMARK 3 6 2.9240 - 2.7517 1.00 3501 142 0.3072 0.3320 REMARK 3 7 2.7517 - 2.6140 1.00 3436 135 0.3298 0.3476 REMARK 3 8 2.6140 - 2.5002 0.89 3052 122 0.3307 0.3636 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.053 5637 REMARK 3 ANGLE : 1.308 7632 REMARK 3 CHIRALITY : 0.065 877 REMARK 3 PLANARITY : 0.010 970 REMARK 3 DIHEDRAL : 14.621 2092 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97894 REMARK 200 MONOCHROMATOR : BENT SINGLE CRYSTAL REMARK 200 MONOCHROMATOR SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29249 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 38.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% (W/V) PEG 1500, 0.1 M CACL2, REMARK 280 0.1 M IMIDAZOLE PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.72500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.83500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.72500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.83500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.45000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.72500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.83500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.45000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.72500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.83500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 602 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 44 REMARK 465 TRP A 45 REMARK 465 LYS A 46 REMARK 465 GLU A 47 REMARK 465 ALA A 48 REMARK 465 ASN A 317 REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 GLY A 321 REMARK 465 SER A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 324 REMARK 465 GLY A 457A REMARK 465 GLY A 457B REMARK 465 GLN A 457C REMARK 465 SER A 457D REMARK 465 ASN A 457E REMARK 465 GLU A 457F REMARK 465 THR A 457G REMARK 465 ASN A 457H REMARK 465 LYS A 492 REMARK 465 VAL B 44 REMARK 465 TRP B 45 REMARK 465 LYS B 46 REMARK 465 GLU B 47 REMARK 465 ALA B 48 REMARK 465 ASN B 317 REMARK 465 GLY B 318 REMARK 465 GLY B 319 REMARK 465 SER B 320 REMARK 465 GLY B 321 REMARK 465 SER B 322 REMARK 465 GLY B 323 REMARK 465 GLY B 324 REMARK 465 GLY B 457A REMARK 465 GLY B 457B REMARK 465 GLN B 457C REMARK 465 SER B 457D REMARK 465 ASN B 457E REMARK 465 GLU B 457F REMARK 465 THR B 457G REMARK 465 ASN B 457H REMARK 465 ILE B 491 REMARK 465 LYS B 492 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 268 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 211 110.14 -167.05 REMARK 500 GLN A 258 -55.48 67.80 REMARK 500 GLU A 268 -154.84 -114.57 REMARK 500 ASN A 276 132.68 -173.37 REMARK 500 LYS A 351 -97.65 -53.65 REMARK 500 HIS A 352 -27.94 -22.07 REMARK 500 PRO A 354 -95.37 -13.02 REMARK 500 THR B 50 170.33 176.17 REMARK 500 ASP B 57 31.13 -96.59 REMARK 500 GLN B 82 81.56 -155.64 REMARK 500 THR B 90 88.41 -153.98 REMARK 500 GLN B 203 169.78 179.64 REMARK 500 ASP B 211 106.83 -166.24 REMARK 500 GLN B 258 -59.10 66.57 REMARK 500 GLU B 268 -112.21 -96.82 REMARK 500 ASN B 276 96.76 -178.63 REMARK 500 PRO B 354 -95.39 -12.82 REMARK 500 LYS B 487 118.61 -166.39 REMARK 500 REMARK 500 REMARK: NULL DBREF 4I53 A 44 492 PDB 4I53 4I53 44 492 DBREF 4I53 B 44 492 PDB 4I53 4I53 44 492 SEQRES 1 A 358 VAL TRP LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER SEQRES 2 A 358 ASP ALA LYS ALA TYR GLU LYS GLU VAL HIS ASN VAL TRP SEQRES 3 A 358 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 A 358 GLU MET VAL LEU ALA ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 A 358 TRP LYS ASN ASP MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 A 358 ILE SER LEU TRP ASP GLU SER LEU LYS PRO CYS VAL LYS SEQRES 7 A 358 LEU THR GLY GLY SER ALA ILE THR GLN ALA CYS PRO LYS SEQRES 8 A 358 VAL SER PHE ASP PRO ILE PRO LEU HIS TYR CYS ALA PRO SEQRES 9 A 358 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 A 358 ASN GLY THR GLY PRO CYS ARG ASN VAL SER THR VAL GLN SEQRES 11 A 358 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 A 358 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 A 358 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 A 358 VAL HIS LEU ASN GLU SER VAL ASN ILE VAL CYS THR ARG SEQRES 15 A 358 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASN ILE ARG SEQRES 16 A 358 GLN ALA HIS CYS ASN ILE ASN GLU SER LYS TRP ASN ASN SEQRES 17 A 358 THR LEU GLN LYS VAL GLY GLU GLU LEU ALA LYS HIS PHE SEQRES 18 A 358 PRO SER LYS THR ILE LYS PHE GLU PRO SER SER GLY GLY SEQRES 19 A 358 ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS ARG GLY SEQRES 20 A 358 GLU PHE PHE TYR CYS ASN THR SER ASP LEU PHE ASN GLY SEQRES 21 A 358 THR TYR ARG ASN GLY THR TYR ASN HIS THR GLY ARG SER SEQRES 22 A 358 SER ASN GLY THR ILE THR LEU GLN CYS LYS ILE LYS GLN SEQRES 23 A 358 ILE ILE ASN MET TRP GLN GLU VAL GLY ARG ALA ILE TYR SEQRES 24 A 358 ALA PRO PRO ILE GLU GLY GLU ILE THR CYS ASN SER ASN SEQRES 25 A 358 ILE THR GLY LEU LEU LEU LEU ARG ASP GLY GLY GLN SER SEQRES 26 A 358 ASN GLU THR ASN ASP THR GLU THR PHE ARG PRO GLY GLY SEQRES 27 A 358 GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS SEQRES 28 A 358 TYR LYS VAL VAL GLU ILE LYS SEQRES 1 B 358 VAL TRP LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER SEQRES 2 B 358 ASP ALA LYS ALA TYR GLU LYS GLU VAL HIS ASN VAL TRP SEQRES 3 B 358 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 B 358 GLU MET VAL LEU ALA ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 B 358 TRP LYS ASN ASP MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 B 358 ILE SER LEU TRP ASP GLU SER LEU LYS PRO CYS VAL LYS SEQRES 7 B 358 LEU THR GLY GLY SER ALA ILE THR GLN ALA CYS PRO LYS SEQRES 8 B 358 VAL SER PHE ASP PRO ILE PRO LEU HIS TYR CYS ALA PRO SEQRES 9 B 358 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 B 358 ASN GLY THR GLY PRO CYS ARG ASN VAL SER THR VAL GLN SEQRES 11 B 358 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 B 358 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 B 358 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 B 358 VAL HIS LEU ASN GLU SER VAL ASN ILE VAL CYS THR ARG SEQRES 15 B 358 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASN ILE ARG SEQRES 16 B 358 GLN ALA HIS CYS ASN ILE ASN GLU SER LYS TRP ASN ASN SEQRES 17 B 358 THR LEU GLN LYS VAL GLY GLU GLU LEU ALA LYS HIS PHE SEQRES 18 B 358 PRO SER LYS THR ILE LYS PHE GLU PRO SER SER GLY GLY SEQRES 19 B 358 ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS ARG GLY SEQRES 20 B 358 GLU PHE PHE TYR CYS ASN THR SER ASP LEU PHE ASN GLY SEQRES 21 B 358 THR TYR ARG ASN GLY THR TYR ASN HIS THR GLY ARG SER SEQRES 22 B 358 SER ASN GLY THR ILE THR LEU GLN CYS LYS ILE LYS GLN SEQRES 23 B 358 ILE ILE ASN MET TRP GLN GLU VAL GLY ARG ALA ILE TYR SEQRES 24 B 358 ALA PRO PRO ILE GLU GLY GLU ILE THR CYS ASN SER ASN SEQRES 25 B 358 ILE THR GLY LEU LEU LEU LEU ARG ASP GLY GLY GLN SER SEQRES 26 B 358 ASN GLU THR ASN ASP THR GLU THR PHE ARG PRO GLY GLY SEQRES 27 B 358 GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS SEQRES 28 B 358 TYR LYS VAL VAL GLU ILE LYS MODRES 4I53 ASN A 234 ASN GLYCOSYLATION SITE MODRES 4I53 ASN A 262 ASN GLYCOSYLATION SITE MODRES 4I53 ASN A 276 ASN GLYCOSYLATION SITE MODRES 4I53 ASN A 289 ASN GLYCOSYLATION SITE MODRES 4I53 ASN A 339 ASN GLYCOSYLATION SITE MODRES 4I53 ASN A 386 ASN GLYCOSYLATION SITE MODRES 4I53 ASN A 392 ASN GLYCOSYLATION SITE MODRES 4I53 ASN B 234 ASN GLYCOSYLATION SITE MODRES 4I53 ASN B 262 ASN GLYCOSYLATION SITE MODRES 4I53 ASN B 276 ASN GLYCOSYLATION SITE MODRES 4I53 ASN B 289 ASN GLYCOSYLATION SITE MODRES 4I53 ASN B 386 ASN GLYCOSYLATION SITE MODRES 4I53 ASN B 392 ASN GLYCOSYLATION SITE HET 1C1 A 501 28 HET NAG A 502 14 HET NAG A 503 14 HET NAG A 504 14 HET NAG A 505 14 HET NAG A 506 14 HET NAG A 507 14 HET NAG A 508 14 HET 1C1 B 501 28 HET FMT B 502 3 HET NAG B 503 14 HET NAG B 504 14 HET NAG B 505 14 HET NAG B 506 14 HET NAG B 507 14 HET NAG B 508 14 HETNAM 1C1 AMINO({[(1R,2R)-1-({[(4-CHLORO-3-FLUOROPHENYL) HETNAM 2 1C1 AMINO](OXO)ACETYL}AMINO)-2,3-DIHYDRO-1H-INDEN-2- HETNAM 3 1C1 YL]METHYL}AMINO)METHANIMI NIUM HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FMT FORMIC ACID HETSYN 1C1 [AMINO({[(1R,2R)-1-{[(4-CHLORO-3- FLUOROPHENYL) HETSYN 2 1C1 CARBAMOYL]FORMAMIDO}-2,3-DIHYDRO-1H- INDEN-2- HETSYN 3 1C1 YL]METHYL}AMINO)METHYLIDENE]AZANIUM HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 1C1 2(C19 H20 CL F N5 O2 1+) FORMUL 4 NAG 13(C8 H15 N O6) FORMUL 12 FMT C H2 O2 FORMUL 19 HOH *259(H2 O) HELIX 1 1 GLU A 64 CYS A 74 1 11 HELIX 2 2 ASN A 98 LEU A 116 1 19 HELIX 3 3 GLU A 335 PHE A 353 1 19 HELIX 4 4 ASP A 368 THR A 373 1 6 HELIX 5 5 MET A 475 TYR A 484 1 10 HELIX 6 6 GLU B 64 CYS B 74 1 11 HELIX 7 7 ASN B 98 LEU B 116 1 19 HELIX 8 8 GLU B 335 PHE B 353 1 19 HELIX 9 9 ASP B 368 THR B 373 1 6 HELIX 10 10 MET B 475 TYR B 484 1 10 SHEET 1 A 3 VAL A 75 PRO A 76 0 SHEET 2 A 3 PHE A 53 SER A 56 1 N CYS A 54 O VAL A 75 SHEET 3 A 3 HIS A 216 CYS A 218 -1 O CYS A 218 N PHE A 53 SHEET 1 B 4 MET A 84 LEU A 86 0 SHEET 2 B 4 VAL A 242 VAL A 245 -1 O THR A 244 N MET A 84 SHEET 3 B 4 PHE A 223 CYS A 228 -1 N LYS A 227 O SER A 243 SHEET 4 B 4 TYR A 486 GLU A 490 -1 O LYS A 487 N LEU A 226 SHEET 1 C 2 GLU A 91 ASN A 94 0 SHEET 2 C 2 THR A 236 CYS A 239 -1 O CYS A 239 N GLU A 91 SHEET 1 D 4 SER A 199 THR A 202 0 SHEET 2 D 4 VAL A 120 THR A 123 -1 N THR A 123 O SER A 199 SHEET 3 D 4 ARG A 432 ILE A 434 -1 O ARG A 432 N LEU A 122 SHEET 4 D 4 ILE A 423 ASN A 425 -1 N ILE A 424 O ALA A 433 SHEET 1 E 7 LEU A 259 LEU A 261 0 SHEET 2 E 7 ILE A 443 ARG A 456 -1 O GLY A 451 N LEU A 260 SHEET 3 E 7 ILE A 284 ARG A 298 -1 N VAL A 292 O ILE A 449 SHEET 4 E 7 THR A 465 PRO A 470 0 SHEET 5 E 7 THR A 358 PHE A 361 1 N LYS A 360 O GLU A 466 SHEET 6 E 7 GLY A 393 ARG A 396 -1 O TYR A 395 N ILE A 359 SHEET 7 E 7 THR A 399 HIS A 405 -1 O ASN A 404 N THR A 394 SHEET 1 F 5 ILE A 271 SER A 274 0 SHEET 2 F 5 ILE A 284 ARG A 298 -1 O ILE A 285 N ARG A 273 SHEET 3 F 5 ILE A 443 ARG A 456 -1 O ILE A 449 N VAL A 292 SHEET 4 F 5 GLN A 328 ASN A 334 0 SHEET 5 F 5 THR A 413 LYS A 419 -1 O ILE A 414 N ILE A 333 SHEET 1 G 2 HIS A 374 CYS A 378 0 SHEET 2 G 2 GLU A 381 CYS A 385 -1 O GLU A 381 N CYS A 378 SHEET 1 H 3 VAL B 75 PRO B 76 0 SHEET 2 H 3 PHE B 53 SER B 56 1 N CYS B 54 O VAL B 75 SHEET 3 H 3 HIS B 216 CYS B 218 -1 O CYS B 218 N PHE B 53 SHEET 1 I 2 GLU B 91 ASN B 94 0 SHEET 2 I 2 THR B 236 CYS B 239 -1 O CYS B 239 N GLU B 91 SHEET 1 J 4 SER B 199 THR B 202 0 SHEET 2 J 4 VAL B 120 THR B 123 -1 N THR B 123 O SER B 199 SHEET 3 J 4 ARG B 432 ILE B 434 -1 O ILE B 434 N VAL B 120 SHEET 4 J 4 ILE B 423 ASN B 425 -1 N ILE B 424 O ALA B 433 SHEET 1 K 3 VAL B 242 VAL B 245 0 SHEET 2 K 3 ALA B 224 CYS B 228 -1 N LYS B 227 O SER B 243 SHEET 3 K 3 TYR B 486 VAL B 489 -1 O LYS B 487 N LEU B 226 SHEET 1 L 7 LEU B 259 LEU B 261 0 SHEET 2 L 7 ILE B 443 ARG B 456 -1 O GLY B 451 N LEU B 260 SHEET 3 L 7 ILE B 284 ARG B 298 -1 N VAL B 292 O ILE B 449 SHEET 4 L 7 GLN B 328 ASN B 334 -1 O HIS B 330 N THR B 297 SHEET 5 L 7 THR B 413 ILE B 420 -1 O ILE B 414 N ILE B 333 SHEET 6 L 7 GLU B 381 CYS B 385 -1 N TYR B 384 O LYS B 419 SHEET 7 L 7 HIS B 374 CYS B 378 -1 N CYS B 378 O GLU B 381 SHEET 1 M 7 ILE B 271 SER B 274 0 SHEET 2 M 7 ILE B 284 ARG B 298 -1 O ILE B 285 N ARG B 273 SHEET 3 M 7 ILE B 443 ARG B 456 -1 O ILE B 449 N VAL B 292 SHEET 4 M 7 THR B 465 PRO B 470 -1 O ARG B 469 N LEU B 455 SHEET 5 M 7 THR B 358 PHE B 361 1 N LYS B 360 O GLU B 466 SHEET 6 M 7 GLY B 393 ARG B 396 -1 O TYR B 395 N ILE B 359 SHEET 7 M 7 THR B 399 HIS B 405 -1 O ASN B 404 N THR B 394 SSBOND 1 CYS A 54 CYS A 74 1555 1555 2.03 SSBOND 2 CYS A 119 CYS A 205 1555 1555 2.03 SSBOND 3 CYS A 218 CYS A 247 1555 1555 2.03 SSBOND 4 CYS A 228 CYS A 239 1555 1555 2.04 SSBOND 5 CYS A 296 CYS A 331 1555 1555 2.03 SSBOND 6 CYS A 378 CYS A 445 1555 1555 1.84 SSBOND 7 CYS A 385 CYS A 418 1555 1555 2.03 SSBOND 8 CYS B 54 CYS B 74 1555 1555 2.03 SSBOND 9 CYS B 119 CYS B 205 1555 1555 2.03 SSBOND 10 CYS B 218 CYS B 247 1555 1555 2.03 SSBOND 11 CYS B 228 CYS B 239 1555 1555 2.03 SSBOND 12 CYS B 296 CYS B 331 1555 1555 2.03 SSBOND 13 CYS B 378 CYS B 445 1555 1555 2.04 SSBOND 14 CYS B 385 CYS B 418 1555 1555 2.03 LINK ND2 ASN A 234 C1 NAG A 502 1555 1555 1.41 LINK ND2 ASN A 262 C1 NAG A 503 1555 1555 1.45 LINK ND2 ASN A 276 C1 NAG A 504 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG A 505 1555 1555 1.45 LINK ND2 ASN A 339 C1 NAG A 506 1555 1555 1.31 LINK ND2 ASN A 386 C1 NAG A 507 1555 1555 1.45 LINK ND2 ASN A 392 C1 NAG A 508 1555 1555 1.45 LINK ND2 ASN B 234 C1 NAG B 503 1555 1555 2.27 LINK ND2 ASN B 262 C1 NAG B 504 1555 1555 1.41 LINK ND2 ASN B 276 C1 NAG B 505 1555 1555 1.44 LINK ND2 ASN B 289 C1 NAG B 506 1555 1555 1.47 LINK ND2 ASN B 386 C1 NAG B 507 1555 1555 1.42 LINK ND2 ASN B 392 C1 NAG B 508 1555 1555 1.51 CRYST1 67.450 127.670 192.900 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014826 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007833 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005184 0.00000