HEADER TRANSFERASE 29-NOV-12 4I5V TITLE CRYSTAL STRUCTURE OF YEAST AP4A PHOSPHORYLASE APA2 IN COMPLEX WITH TITLE 2 AP4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5',5'''-P-1,P-4-TETRAPHOSPHATE PHOSPHORYLASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATP ADENYLYLTRANSFERASE, AP4A PHOSPHORYLASE II, AP,A COMPND 5 PHOSPHORYLASE, DIADENOSINE 5',5'''-P1,P4-TETRAPHOSPHATE COMPND 6 PHOSPHORYLASE, AP-4-A PHOSPHORYLASE; COMPND 7 EC: 2.7.7.53; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: APA2, YDR530C, D9719.33; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS ALPHA/BETA FOLD, AP4A PHOSPHORYLASE, AP4A, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.JIANG,W.T.HOU,Y.CHEN,C.Z.ZHOU REVDAT 3 06-NOV-24 4I5V 1 REMARK SEQADV REVDAT 2 05-FEB-14 4I5V 1 JRNL REVDAT 1 08-MAY-13 4I5V 0 JRNL AUTH W.T.HOU,W.Z.LI,Y.CHEN,Y.L.JIANG,C.Z.ZHOU JRNL TITL STRUCTURES OF YEAST APA2 REVEAL CATALYTIC INSIGHTS INTO A JRNL TITL 2 CANONICAL AP4A PHOSPHORYLASE OF THE HISTIDINE TRIAD JRNL TITL 3 SUPERFAMILY JRNL REF J.MOL.BIOL. V. 425 2687 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23628156 JRNL DOI 10.1016/J.JMB.2013.04.018 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 19436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0750 - 5.1553 0.86 2494 143 0.1722 0.2428 REMARK 3 2 5.1553 - 4.0930 0.92 2585 154 0.1428 0.2163 REMARK 3 3 4.0930 - 3.5760 0.95 2673 135 0.1728 0.2743 REMARK 3 4 3.5760 - 3.2492 0.96 2668 153 0.2044 0.2878 REMARK 3 5 3.2492 - 3.0163 0.96 2675 153 0.2104 0.2955 REMARK 3 6 3.0163 - 2.8385 0.96 2675 122 0.2296 0.3273 REMARK 3 7 2.8385 - 2.6964 0.95 2678 128 0.2959 0.4142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 68.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.790 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.43790 REMARK 3 B22 (A**2) : 7.58430 REMARK 3 B33 (A**2) : -13.58410 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -8.93320 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4910 REMARK 3 ANGLE : 1.330 6680 REMARK 3 CHIRALITY : 0.085 757 REMARK 3 PLANARITY : 0.006 844 REMARK 3 DIHEDRAL : 15.517 1800 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 20.0455 2.0837 35.5139 REMARK 3 T TENSOR REMARK 3 T11: 0.1977 T22: 0.1444 REMARK 3 T33: 0.1674 T12: -0.0603 REMARK 3 T13: -0.0758 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 3.2536 L22: 2.1457 REMARK 3 L33: 1.1118 L12: -1.2270 REMARK 3 L13: -0.5537 L23: -0.0928 REMARK 3 S TENSOR REMARK 3 S11: 0.0905 S12: 0.0895 S13: -0.2601 REMARK 3 S21: -0.0523 S22: 0.0831 S23: 0.2327 REMARK 3 S31: 0.0716 S32: -0.2800 S33: 0.0888 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19447 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.696 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 2K, 0.1M TRIS-HCL, PH 8.0, 20% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 101.67650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.39050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 101.67650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.39050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 55 REMARK 465 ALA A 56 REMARK 465 ASN A 57 REMARK 465 LYS A 58 REMARK 465 ASN A 59 REMARK 465 SER A 60 REMARK 465 ASP A 61 REMARK 465 SER A 62 REMARK 465 LYS A 63 REMARK 465 ALA A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 237 REMARK 465 TRP A 238 REMARK 465 THR A 239 REMARK 465 ASN A 240 REMARK 465 GLU A 241 REMARK 465 SER A 242 REMARK 465 PRO A 243 REMARK 465 GLU A 244 REMARK 465 LEU A 245 REMARK 465 GLY A 317 REMARK 465 GLN A 318 REMARK 465 LYS A 319 REMARK 465 PRO A 320 REMARK 465 THR A 321 REMARK 465 GLU A 322 REMARK 465 TYR A 323 REMARK 465 HIS A 324 REMARK 465 TYR A 325 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ASP B 55 REMARK 465 ALA B 56 REMARK 465 ASN B 57 REMARK 465 LYS B 58 REMARK 465 ASN B 59 REMARK 465 SER B 60 REMARK 465 ASP B 61 REMARK 465 SER B 62 REMARK 465 LYS B 63 REMARK 465 ALA B 64 REMARK 465 GLU B 65 REMARK 465 GLN B 236 REMARK 465 ASP B 237 REMARK 465 TRP B 238 REMARK 465 THR B 239 REMARK 465 ASN B 240 REMARK 465 GLU B 241 REMARK 465 SER B 242 REMARK 465 PRO B 243 REMARK 465 GLU B 244 REMARK 465 LEU B 245 REMARK 465 GLY B 317 REMARK 465 GLN B 318 REMARK 465 LYS B 319 REMARK 465 PRO B 320 REMARK 465 THR B 321 REMARK 465 GLU B 322 REMARK 465 TYR B 323 REMARK 465 HIS B 324 REMARK 465 TYR B 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 263 O ILE A 276 2.02 REMARK 500 OG1 THR B 116 OG SER B 118 2.07 REMARK 500 O ASP B 136 N VAL B 138 2.13 REMARK 500 O GLY A 85 OG SER A 106 2.14 REMARK 500 OG SER A 264 O GLY A 311 2.17 REMARK 500 OG SER B 156 O2B B4P B 401 2.18 REMARK 500 O ASP B 135 N ASP B 137 2.18 REMARK 500 O ASP B 136 N THR B 139 2.18 REMARK 500 O SER A 113 OH TYR A 147 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 247 OD1 ASP B 218 1554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 270 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 39 -16.41 75.03 REMARK 500 ALA A 69 -71.64 -56.54 REMARK 500 VAL A 96 -62.24 -90.87 REMARK 500 ASP A 133 -119.11 60.72 REMARK 500 LYS A 134 -23.75 74.97 REMARK 500 ASP A 135 161.50 169.51 REMARK 500 LYS A 182 75.02 47.79 REMARK 500 THR A 188 -65.26 -133.00 REMARK 500 PHE A 189 -58.27 -131.70 REMARK 500 PHE A 235 -61.12 -122.58 REMARK 500 LEU A 272 -53.40 -127.01 REMARK 500 MET A 273 64.20 63.87 REMARK 500 ASN A 277 -164.43 -103.22 REMARK 500 THR B 39 -1.46 72.57 REMARK 500 GLU B 99 -1.65 76.99 REMARK 500 LYS B 134 -91.97 58.77 REMARK 500 ASP B 135 10.86 106.31 REMARK 500 ASP B 136 -95.93 63.44 REMARK 500 ASP B 137 -4.53 -44.72 REMARK 500 PRO B 187 79.32 -67.89 REMARK 500 LYS B 247 -125.04 63.47 REMARK 500 SER B 248 87.02 65.70 REMARK 500 LEU B 272 -55.53 -130.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B4P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B4P B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I5T RELATED DB: PDB REMARK 900 RELATED ID: 4I5W RELATED DB: PDB DBREF 4I5V A 1 325 UNP P22108 APA2_YEAST 1 325 DBREF 4I5V B 1 325 UNP P22108 APA2_YEAST 1 325 SEQADV 4I5V MET A -7 UNP P22108 EXPRESSION TAG SEQADV 4I5V GLY A -6 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS A -5 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS A -4 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS A -3 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS A -2 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS A -1 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS A 0 UNP P22108 EXPRESSION TAG SEQADV 4I5V ALA A 161 UNP P22108 HIS 161 ENGINEERED MUTATION SEQADV 4I5V MET B -7 UNP P22108 EXPRESSION TAG SEQADV 4I5V GLY B -6 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS B -5 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS B -4 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS B -3 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS B -2 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS B -1 UNP P22108 EXPRESSION TAG SEQADV 4I5V HIS B 0 UNP P22108 EXPRESSION TAG SEQADV 4I5V ALA B 161 UNP P22108 HIS 161 ENGINEERED MUTATION SEQRES 1 A 333 MET GLY HIS HIS HIS HIS HIS HIS MET ILE GLU GLU ASN SEQRES 2 A 333 LEU LYS GLN LYS ILE HIS ASP LYS PHE VAL ALA ALA LYS SEQRES 3 A 333 LYS ASN GLY HIS LEU LYS VAL THR HIS ALA GLU SER LYS SEQRES 4 A 333 LYS LEU LYS ASP PRO GLN THR THR THR GLN TYR TRP VAL SEQRES 5 A 333 THR PHE ALA PRO SER LEU ALA LEU LYS PRO ASP ALA ASN SEQRES 6 A 333 LYS ASN SER ASP SER LYS ALA GLU ASP PRO PHE ALA ASN SEQRES 7 A 333 PRO ASP GLU GLU LEU VAL VAL THR GLU ASP LEU ASN GLY SEQRES 8 A 333 ASP GLY GLU TYR LYS LEU LEU LEU ASN LYS PHE PRO VAL SEQRES 9 A 333 VAL PRO GLU HIS SER LEU LEU VAL THR SER GLU PHE LYS SEQRES 10 A 333 ASP GLN ARG SER ALA LEU THR PRO SER ASP LEU MET THR SEQRES 11 A 333 ALA TYR ASN VAL LEU CYS SER LEU GLN GLY ASP LYS ASP SEQRES 12 A 333 ASP ASP VAL THR CYS GLU ARG TYR LEU VAL PHE TYR ASN SEQRES 13 A 333 CYS GLY PRO HIS SER GLY SER SER GLN ASP HIS LYS ALA SEQRES 14 A 333 LEU GLN ILE MET GLN MET PRO GLU LYS PHE ILE PRO PHE SEQRES 15 A 333 GLN ASP VAL LEU CYS ASN GLY LYS ASP HIS PHE LEU PRO SEQRES 16 A 333 THR PHE ASN ALA GLU PRO LEU GLN ASP ASP LYS VAL SER SEQRES 17 A 333 PHE ALA HIS PHE VAL LEU PRO LEU PRO GLU SER SER ASP SEQRES 18 A 333 GLN VAL ASP GLU ASP LEU LEU ALA MET CYS TYR VAL SER SEQRES 19 A 333 LEU MET GLN ARG ALA LEU THR PHE PHE GLN ASP TRP THR SEQRES 20 A 333 ASN GLU SER PRO GLU LEU THR LYS SER TYR ASN VAL LEU SEQRES 21 A 333 LEU THR LYS LYS TRP ILE CYS VAL VAL PRO ARG SER HIS SEQRES 22 A 333 ALA LYS SER GLY PRO PRO LEU MET LEU ASN ILE ASN SER SEQRES 23 A 333 THR GLY TYR CYS GLY MET ILE LEU VAL LYS ASP ARG GLU SEQRES 24 A 333 LYS LEU GLU ASN LEU THR GLU ASP PRO HIS LEU VAL ASP SEQRES 25 A 333 LYS SER LEU LEU GLN CYS GLY PHE PRO ASN THR ALA GLY SEQRES 26 A 333 GLN LYS PRO THR GLU TYR HIS TYR SEQRES 1 B 333 MET GLY HIS HIS HIS HIS HIS HIS MET ILE GLU GLU ASN SEQRES 2 B 333 LEU LYS GLN LYS ILE HIS ASP LYS PHE VAL ALA ALA LYS SEQRES 3 B 333 LYS ASN GLY HIS LEU LYS VAL THR HIS ALA GLU SER LYS SEQRES 4 B 333 LYS LEU LYS ASP PRO GLN THR THR THR GLN TYR TRP VAL SEQRES 5 B 333 THR PHE ALA PRO SER LEU ALA LEU LYS PRO ASP ALA ASN SEQRES 6 B 333 LYS ASN SER ASP SER LYS ALA GLU ASP PRO PHE ALA ASN SEQRES 7 B 333 PRO ASP GLU GLU LEU VAL VAL THR GLU ASP LEU ASN GLY SEQRES 8 B 333 ASP GLY GLU TYR LYS LEU LEU LEU ASN LYS PHE PRO VAL SEQRES 9 B 333 VAL PRO GLU HIS SER LEU LEU VAL THR SER GLU PHE LYS SEQRES 10 B 333 ASP GLN ARG SER ALA LEU THR PRO SER ASP LEU MET THR SEQRES 11 B 333 ALA TYR ASN VAL LEU CYS SER LEU GLN GLY ASP LYS ASP SEQRES 12 B 333 ASP ASP VAL THR CYS GLU ARG TYR LEU VAL PHE TYR ASN SEQRES 13 B 333 CYS GLY PRO HIS SER GLY SER SER GLN ASP HIS LYS ALA SEQRES 14 B 333 LEU GLN ILE MET GLN MET PRO GLU LYS PHE ILE PRO PHE SEQRES 15 B 333 GLN ASP VAL LEU CYS ASN GLY LYS ASP HIS PHE LEU PRO SEQRES 16 B 333 THR PHE ASN ALA GLU PRO LEU GLN ASP ASP LYS VAL SER SEQRES 17 B 333 PHE ALA HIS PHE VAL LEU PRO LEU PRO GLU SER SER ASP SEQRES 18 B 333 GLN VAL ASP GLU ASP LEU LEU ALA MET CYS TYR VAL SER SEQRES 19 B 333 LEU MET GLN ARG ALA LEU THR PHE PHE GLN ASP TRP THR SEQRES 20 B 333 ASN GLU SER PRO GLU LEU THR LYS SER TYR ASN VAL LEU SEQRES 21 B 333 LEU THR LYS LYS TRP ILE CYS VAL VAL PRO ARG SER HIS SEQRES 22 B 333 ALA LYS SER GLY PRO PRO LEU MET LEU ASN ILE ASN SER SEQRES 23 B 333 THR GLY TYR CYS GLY MET ILE LEU VAL LYS ASP ARG GLU SEQRES 24 B 333 LYS LEU GLU ASN LEU THR GLU ASP PRO HIS LEU VAL ASP SEQRES 25 B 333 LYS SER LEU LEU GLN CYS GLY PHE PRO ASN THR ALA GLY SEQRES 26 B 333 GLN LYS PRO THR GLU TYR HIS TYR HET B4P A 401 53 HET B4P B 401 53 HETNAM B4P BIS(ADENOSINE)-5'-TETRAPHOSPHATE FORMUL 3 B4P 2(C20 H28 N10 O19 P4) FORMUL 5 HOH *52(H2 O) HELIX 1 1 ASN A 5 ASN A 20 1 16 HELIX 2 2 PRO A 48 LYS A 53 5 6 HELIX 3 3 ASP A 72 GLU A 74 5 3 HELIX 4 4 THR A 116 GLN A 131 1 16 HELIX 5 5 GLY A 150 GLY A 154 5 5 HELIX 6 6 PRO A 173 ASN A 180 1 8 HELIX 7 7 SER A 211 VAL A 215 5 5 HELIX 8 8 ASP A 216 THR A 233 1 18 HELIX 9 9 ASN A 277 CYS A 282 5 6 HELIX 10 10 ASP A 289 ASP A 299 1 11 HELIX 11 11 PRO A 300 GLY A 311 1 12 HELIX 12 12 ASN B 5 GLY B 21 1 17 HELIX 13 13 PRO B 48 LEU B 52 5 5 HELIX 14 14 THR B 116 LEU B 130 1 15 HELIX 15 15 PRO B 173 ASN B 180 1 8 HELIX 16 16 SER B 211 VAL B 215 5 5 HELIX 17 17 ASP B 216 THR B 233 1 18 HELIX 18 18 ASN B 277 CYS B 282 5 6 HELIX 19 19 ASP B 289 ASP B 299 1 11 HELIX 20 20 PRO B 300 GLY B 311 1 12 SHEET 1 A 3 GLU A 29 LYS A 34 0 SHEET 2 A 3 GLN A 41 PHE A 46 -1 O TYR A 42 N LEU A 33 SHEET 3 A 3 MET A 284 VAL A 287 1 O VAL A 287 N THR A 45 SHEET 1 B 8 VAL A 76 THR A 78 0 SHEET 2 B 8 TYR A 87 LEU A 91 -1 O LEU A 89 N VAL A 77 SHEET 3 B 8 SER A 101 THR A 105 -1 O LEU A 102 N LEU A 90 SHEET 4 B 8 ALA A 161 GLN A 166 -1 O LEU A 162 N LEU A 103 SHEET 5 B 8 TYR A 143 CYS A 149 -1 N PHE A 146 O GLN A 163 SHEET 6 B 8 TYR A 249 LEU A 253 -1 O LEU A 253 N VAL A 145 SHEET 7 B 8 TRP A 257 PRO A 262 -1 O CYS A 259 N LEU A 252 SHEET 8 B 8 PHE A 204 PRO A 207 -1 N LEU A 206 O ILE A 258 SHEET 1 C 3 GLU B 29 LYS B 34 0 SHEET 2 C 3 GLN B 41 PHE B 46 -1 O TYR B 42 N LEU B 33 SHEET 3 C 3 MET B 284 VAL B 287 1 O VAL B 287 N THR B 45 SHEET 1 D 8 VAL B 76 THR B 78 0 SHEET 2 D 8 TYR B 87 LEU B 91 -1 O LEU B 89 N VAL B 77 SHEET 3 D 8 SER B 101 THR B 105 -1 O VAL B 104 N LYS B 88 SHEET 4 D 8 ALA B 161 GLN B 166 -1 O LEU B 162 N LEU B 103 SHEET 5 D 8 TYR B 143 CYS B 149 -1 N PHE B 146 O GLN B 163 SHEET 6 D 8 TYR B 249 THR B 254 -1 O LEU B 253 N VAL B 145 SHEET 7 D 8 TRP B 257 PRO B 262 -1 O VAL B 261 N ASN B 250 SHEET 8 D 8 PHE B 204 PRO B 207 -1 N LEU B 206 O ILE B 258 SSBOND 1 CYS A 140 CYS B 140 1555 1555 2.04 CISPEP 1 LYS B 53 PRO B 54 0 -2.16 SITE 1 AC1 25 LYS A 53 PRO A 67 PHE A 68 LEU A 75 SITE 2 AC1 25 LEU A 91 ASN A 92 LYS A 93 PHE A 94 SITE 3 AC1 25 VAL A 96 HIS A 100 LEU A 102 ASN A 148 SITE 4 AC1 25 GLY A 154 SER A 155 SER A 156 GLN A 157 SITE 5 AC1 25 GLN A 163 ASN A 277 THR A 279 MET A 284 SITE 6 AC1 25 LEU A 286 LYS A 288 HOH A 518 HOH A 526 SITE 7 AC1 25 HOH A 534 SITE 1 AC2 20 LYS B 53 PRO B 67 LEU B 91 ASN B 92 SITE 2 AC2 20 LYS B 93 PHE B 94 VAL B 96 LEU B 102 SITE 3 AC2 20 ASN B 148 GLY B 154 SER B 155 SER B 156 SITE 4 AC2 20 GLN B 157 GLN B 163 MET B 165 ASN B 277 SITE 5 AC2 20 THR B 279 MET B 284 ILE B 285 HOH B 513 CRYST1 203.353 52.781 70.764 90.00 99.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004918 0.000000 0.000860 0.00000 SCALE2 0.000000 0.018946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014346 0.00000