HEADER TRANSFERASE 29-NOV-12 4I5W TITLE CRYSTAL STRUCTURE OF YEAST AP4A PHOSPHORYLASE APA2 IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5',5'''-P-1,P-4-TETRAPHOSPHATE PHOSPHORYLASE 2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.53; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: APA2, YDR530C, D9719.33; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS ALPHA/BETA FOLD, AP4A PHOSPHORYLASE, AP4A, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.JIANG,W.T.HOU,Y.CHEN,C.Z.ZHOU REVDAT 2 05-FEB-14 4I5W 1 JRNL REVDAT 1 08-MAY-13 4I5W 0 JRNL AUTH W.T.HOU,W.Z.LI,Y.CHEN,Y.L.JIANG,C.Z.ZHOU JRNL TITL STRUCTURES OF YEAST APA2 REVEAL CATALYTIC INSIGHTS INTO A JRNL TITL 2 CANONICAL AP4A PHOSPHORYLASE OF THE HISTIDINE TRIAD JRNL TITL 3 SUPERFAMILY JRNL REF J.MOL.BIOL. V. 425 2687 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23628156 JRNL DOI 10.1016/J.JMB.2013.04.018 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 15734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5645 - 6.2062 0.75 1118 125 0.2709 0.2841 REMARK 3 2 6.2062 - 4.9282 0.92 1296 144 0.2310 0.2867 REMARK 3 3 4.9282 - 4.3059 0.93 1288 143 0.1754 0.2127 REMARK 3 4 4.3059 - 3.9125 0.96 1308 146 0.1897 0.2108 REMARK 3 5 3.9125 - 3.6322 0.91 1240 139 0.2166 0.2521 REMARK 3 6 3.6322 - 3.4182 0.98 1319 145 0.2086 0.2597 REMARK 3 7 3.4182 - 3.2470 0.98 1334 149 0.2110 0.2398 REMARK 3 8 3.2470 - 3.1057 0.98 1324 146 0.2391 0.2605 REMARK 3 9 3.1057 - 2.9862 0.99 1337 149 0.2447 0.3081 REMARK 3 10 2.9862 - 2.8832 0.99 1334 148 0.2607 0.3054 REMARK 3 11 2.8832 - 2.7930 0.95 1262 140 0.2991 0.3768 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.27 REMARK 3 B_SOL : 51.64 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.670 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.34210 REMARK 3 B22 (A**2) : -13.10750 REMARK 3 B33 (A**2) : 10.76540 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4766 REMARK 3 ANGLE : 1.497 6468 REMARK 3 CHIRALITY : 0.096 727 REMARK 3 PLANARITY : 0.006 816 REMARK 3 DIHEDRAL : 17.787 1780 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-DEC-12. REMARK 100 THE RCSB ID CODE IS RCSB076343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97892 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15784 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.793 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 2K, 0.1M MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.42300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.11850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.16350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.11850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.42300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.16350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 53 REMARK 465 PRO A 54 REMARK 465 ASP A 55 REMARK 465 ALA A 56 REMARK 465 ASN A 57 REMARK 465 LYS A 58 REMARK 465 ASN A 59 REMARK 465 SER A 60 REMARK 465 ASP A 61 REMARK 465 SER A 62 REMARK 465 LYS A 63 REMARK 465 ALA A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 133 REMARK 465 LYS A 134 REMARK 465 ASP A 135 REMARK 465 ASP A 136 REMARK 465 ASP A 137 REMARK 465 VAL A 138 REMARK 465 THR A 139 REMARK 465 TRP A 238 REMARK 465 THR A 239 REMARK 465 ASN A 240 REMARK 465 GLU A 241 REMARK 465 SER A 242 REMARK 465 PRO A 243 REMARK 465 GLU A 244 REMARK 465 PRO A 320 REMARK 465 THR A 321 REMARK 465 GLU A 322 REMARK 465 TYR A 323 REMARK 465 HIS A 324 REMARK 465 TYR A 325 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ALA B 51 REMARK 465 LEU B 52 REMARK 465 LYS B 53 REMARK 465 PRO B 54 REMARK 465 ASP B 55 REMARK 465 ALA B 56 REMARK 465 ASN B 57 REMARK 465 LYS B 58 REMARK 465 ASN B 59 REMARK 465 SER B 60 REMARK 465 ASP B 61 REMARK 465 SER B 62 REMARK 465 LYS B 63 REMARK 465 ALA B 64 REMARK 465 GLU B 65 REMARK 465 ASP B 133 REMARK 465 LYS B 134 REMARK 465 ASP B 135 REMARK 465 ASP B 136 REMARK 465 ASP B 137 REMARK 465 VAL B 138 REMARK 465 PHE B 185 REMARK 465 LEU B 186 REMARK 465 PRO B 187 REMARK 465 THR B 188 REMARK 465 PHE B 189 REMARK 465 ASN B 190 REMARK 465 ASP B 237 REMARK 465 TRP B 238 REMARK 465 THR B 239 REMARK 465 ASN B 240 REMARK 465 GLU B 241 REMARK 465 SER B 242 REMARK 465 PRO B 243 REMARK 465 GLY B 317 REMARK 465 GLN B 318 REMARK 465 LYS B 319 REMARK 465 PRO B 320 REMARK 465 THR B 321 REMARK 465 GLU B 322 REMARK 465 TYR B 323 REMARK 465 HIS B 324 REMARK 465 TYR B 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 211 OD1 ASP B 213 1.88 REMARK 500 O ASP A 110 OG SER A 113 1.90 REMARK 500 OD1 ASP B 35 OG1 THR B 38 1.93 REMARK 500 O HIS A 22 NZ LYS A 93 2.00 REMARK 500 O ASP B 176 OD1 ASN B 180 2.03 REMARK 500 O GLU B 4 NZ LYS B 9 2.04 REMARK 500 OG SER B 264 O GLY B 311 2.05 REMARK 500 O THR A 188 N ALA A 191 2.07 REMARK 500 NH2 ARG B 112 OG1 THR B 246 2.08 REMARK 500 O ASP B 110 OG SER B 113 2.12 REMARK 500 ND1 HIS B 22 OE2 GLU B 74 2.13 REMARK 500 O THR B 105 NE2 HIS B 159 2.16 REMARK 500 NZ LYS A 31 OG1 THR A 297 2.18 REMARK 500 OG SER B 156 O3P AMP B 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 270 C - N - CA ANGL. DEV. = 13.9 DEGREES REMARK 500 PRO A 270 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 PRO A 271 C - N - CA ANGL. DEV. = -14.1 DEGREES REMARK 500 PRO A 271 C - N - CD ANGL. DEV. = 13.6 DEGREES REMARK 500 PRO B 151 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 39 -6.33 71.77 REMARK 500 GLU A 99 2.12 83.91 REMARK 500 TRP A 257 162.06 175.38 REMARK 500 ASN A 277 -166.40 -116.33 REMARK 500 ALA A 316 153.68 -49.99 REMARK 500 SER B 49 -70.98 -55.01 REMARK 500 GLN B 131 -77.68 -120.12 REMARK 500 ASP B 176 -71.89 -55.70 REMARK 500 HIS B 203 159.46 177.19 REMARK 500 ASN B 277 -166.90 -127.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 277 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 528 DISTANCE = 5.73 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I5T RELATED DB: PDB REMARK 900 RELATED ID: 4I5V RELATED DB: PDB DBREF 4I5W A 1 325 UNP P22108 APA2_YEAST 1 325 DBREF 4I5W B 1 325 UNP P22108 APA2_YEAST 1 325 SEQADV 4I5W MET A -7 UNP P22108 EXPRESSION TAG SEQADV 4I5W GLY A -6 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS A -5 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS A -4 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS A -3 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS A -2 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS A -1 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS A 0 UNP P22108 EXPRESSION TAG SEQADV 4I5W MET B -7 UNP P22108 EXPRESSION TAG SEQADV 4I5W GLY B -6 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS B -5 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS B -4 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS B -3 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS B -2 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS B -1 UNP P22108 EXPRESSION TAG SEQADV 4I5W HIS B 0 UNP P22108 EXPRESSION TAG SEQRES 1 A 333 MET GLY HIS HIS HIS HIS HIS HIS MET ILE GLU GLU ASN SEQRES 2 A 333 LEU LYS GLN LYS ILE HIS ASP LYS PHE VAL ALA ALA LYS SEQRES 3 A 333 LYS ASN GLY HIS LEU LYS VAL THR HIS ALA GLU SER LYS SEQRES 4 A 333 LYS LEU LYS ASP PRO GLN THR THR THR GLN TYR TRP VAL SEQRES 5 A 333 THR PHE ALA PRO SER LEU ALA LEU LYS PRO ASP ALA ASN SEQRES 6 A 333 LYS ASN SER ASP SER LYS ALA GLU ASP PRO PHE ALA ASN SEQRES 7 A 333 PRO ASP GLU GLU LEU VAL VAL THR GLU ASP LEU ASN GLY SEQRES 8 A 333 ASP GLY GLU TYR LYS LEU LEU LEU ASN LYS PHE PRO VAL SEQRES 9 A 333 VAL PRO GLU HIS SER LEU LEU VAL THR SER GLU PHE LYS SEQRES 10 A 333 ASP GLN ARG SER ALA LEU THR PRO SER ASP LEU MET THR SEQRES 11 A 333 ALA TYR ASN VAL LEU CYS SER LEU GLN GLY ASP LYS ASP SEQRES 12 A 333 ASP ASP VAL THR CYS GLU ARG TYR LEU VAL PHE TYR ASN SEQRES 13 A 333 CYS GLY PRO HIS SER GLY SER SER GLN ASP HIS LYS HIS SEQRES 14 A 333 LEU GLN ILE MET GLN MET PRO GLU LYS PHE ILE PRO PHE SEQRES 15 A 333 GLN ASP VAL LEU CYS ASN GLY LYS ASP HIS PHE LEU PRO SEQRES 16 A 333 THR PHE ASN ALA GLU PRO LEU GLN ASP ASP LYS VAL SER SEQRES 17 A 333 PHE ALA HIS PHE VAL LEU PRO LEU PRO GLU SER SER ASP SEQRES 18 A 333 GLN VAL ASP GLU ASP LEU LEU ALA MET CYS TYR VAL SER SEQRES 19 A 333 LEU MET GLN ARG ALA LEU THR PHE PHE GLN ASP TRP THR SEQRES 20 A 333 ASN GLU SER PRO GLU LEU THR LYS SER TYR ASN VAL LEU SEQRES 21 A 333 LEU THR LYS LYS TRP ILE CYS VAL VAL PRO ARG SER HIS SEQRES 22 A 333 ALA LYS SER GLY PRO PRO LEU MET LEU ASN ILE ASN SER SEQRES 23 A 333 THR GLY TYR CYS GLY MET ILE LEU VAL LYS ASP ARG GLU SEQRES 24 A 333 LYS LEU GLU ASN LEU THR GLU ASP PRO HIS LEU VAL ASP SEQRES 25 A 333 LYS SER LEU LEU GLN CYS GLY PHE PRO ASN THR ALA GLY SEQRES 26 A 333 GLN LYS PRO THR GLU TYR HIS TYR SEQRES 1 B 333 MET GLY HIS HIS HIS HIS HIS HIS MET ILE GLU GLU ASN SEQRES 2 B 333 LEU LYS GLN LYS ILE HIS ASP LYS PHE VAL ALA ALA LYS SEQRES 3 B 333 LYS ASN GLY HIS LEU LYS VAL THR HIS ALA GLU SER LYS SEQRES 4 B 333 LYS LEU LYS ASP PRO GLN THR THR THR GLN TYR TRP VAL SEQRES 5 B 333 THR PHE ALA PRO SER LEU ALA LEU LYS PRO ASP ALA ASN SEQRES 6 B 333 LYS ASN SER ASP SER LYS ALA GLU ASP PRO PHE ALA ASN SEQRES 7 B 333 PRO ASP GLU GLU LEU VAL VAL THR GLU ASP LEU ASN GLY SEQRES 8 B 333 ASP GLY GLU TYR LYS LEU LEU LEU ASN LYS PHE PRO VAL SEQRES 9 B 333 VAL PRO GLU HIS SER LEU LEU VAL THR SER GLU PHE LYS SEQRES 10 B 333 ASP GLN ARG SER ALA LEU THR PRO SER ASP LEU MET THR SEQRES 11 B 333 ALA TYR ASN VAL LEU CYS SER LEU GLN GLY ASP LYS ASP SEQRES 12 B 333 ASP ASP VAL THR CYS GLU ARG TYR LEU VAL PHE TYR ASN SEQRES 13 B 333 CYS GLY PRO HIS SER GLY SER SER GLN ASP HIS LYS HIS SEQRES 14 B 333 LEU GLN ILE MET GLN MET PRO GLU LYS PHE ILE PRO PHE SEQRES 15 B 333 GLN ASP VAL LEU CYS ASN GLY LYS ASP HIS PHE LEU PRO SEQRES 16 B 333 THR PHE ASN ALA GLU PRO LEU GLN ASP ASP LYS VAL SER SEQRES 17 B 333 PHE ALA HIS PHE VAL LEU PRO LEU PRO GLU SER SER ASP SEQRES 18 B 333 GLN VAL ASP GLU ASP LEU LEU ALA MET CYS TYR VAL SER SEQRES 19 B 333 LEU MET GLN ARG ALA LEU THR PHE PHE GLN ASP TRP THR SEQRES 20 B 333 ASN GLU SER PRO GLU LEU THR LYS SER TYR ASN VAL LEU SEQRES 21 B 333 LEU THR LYS LYS TRP ILE CYS VAL VAL PRO ARG SER HIS SEQRES 22 B 333 ALA LYS SER GLY PRO PRO LEU MET LEU ASN ILE ASN SER SEQRES 23 B 333 THR GLY TYR CYS GLY MET ILE LEU VAL LYS ASP ARG GLU SEQRES 24 B 333 LYS LEU GLU ASN LEU THR GLU ASP PRO HIS LEU VAL ASP SEQRES 25 B 333 LYS SER LEU LEU GLN CYS GLY PHE PRO ASN THR ALA GLY SEQRES 26 B 333 GLN LYS PRO THR GLU TYR HIS TYR HET PO4 A 401 5 HET AMP A 402 23 HET AMP A 403 23 HET AMP B 401 23 HET AMP B 402 23 HETNAM PO4 PHOSPHATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 PO4 O4 P 3- FORMUL 4 AMP 4(C10 H14 N5 O7 P) FORMUL 8 HOH *56(H2 O) HELIX 1 1 ASN A 5 GLY A 21 1 17 HELIX 2 2 PRO A 48 LEU A 52 5 5 HELIX 3 3 ASP A 72 GLU A 74 5 3 HELIX 4 4 THR A 116 GLN A 131 1 16 HELIX 5 5 PRO A 173 ASN A 180 1 8 HELIX 6 6 SER A 211 VAL A 215 5 5 HELIX 7 7 ASP A 216 THR A 233 1 18 HELIX 8 8 ASN A 277 CYS A 282 5 6 HELIX 9 9 ASP A 289 ASP A 299 1 11 HELIX 10 10 PRO A 300 GLY A 311 1 12 HELIX 11 11 ASN B 5 ASN B 20 1 16 HELIX 12 12 ASP B 72 GLU B 74 5 3 HELIX 13 13 THR B 116 GLN B 131 1 16 HELIX 14 14 PRO B 173 ASN B 180 1 8 HELIX 15 15 SER B 211 VAL B 215 5 5 HELIX 16 16 ASP B 216 THR B 233 1 18 HELIX 17 17 ASN B 277 CYS B 282 5 6 HELIX 18 18 ASP B 289 ASP B 299 1 11 HELIX 19 19 PRO B 300 GLY B 311 1 12 SHEET 1 A 3 GLU A 29 LYS A 34 0 SHEET 2 A 3 GLN A 41 PHE A 46 -1 O TYR A 42 N LEU A 33 SHEET 3 A 3 MET A 284 VAL A 287 1 O ILE A 285 N THR A 45 SHEET 1 B 8 VAL A 76 THR A 78 0 SHEET 2 B 8 TYR A 87 LEU A 91 -1 O LEU A 89 N VAL A 77 SHEET 3 B 8 SER A 101 THR A 105 -1 O LEU A 102 N LEU A 90 SHEET 4 B 8 HIS A 161 GLN A 166 -1 O LEU A 162 N LEU A 103 SHEET 5 B 8 TYR A 143 CYS A 149 -1 N LEU A 144 O MET A 165 SHEET 6 B 8 TYR A 249 THR A 254 -1 O TYR A 249 N CYS A 149 SHEET 7 B 8 TRP A 257 PRO A 262 -1 O VAL A 261 N ASN A 250 SHEET 8 B 8 PHE A 204 PRO A 207 -1 N PHE A 204 O VAL A 260 SHEET 1 C 3 GLU B 29 ASP B 35 0 SHEET 2 C 3 THR B 40 PHE B 46 -1 O PHE B 46 N GLU B 29 SHEET 3 C 3 MET B 284 VAL B 287 1 O ILE B 285 N THR B 45 SHEET 1 D 8 VAL B 76 THR B 78 0 SHEET 2 D 8 TYR B 87 LEU B 91 -1 O LEU B 89 N VAL B 77 SHEET 3 D 8 SER B 101 THR B 105 -1 O LEU B 102 N LEU B 90 SHEET 4 D 8 HIS B 161 GLN B 166 -1 O LEU B 162 N LEU B 103 SHEET 5 D 8 TYR B 143 CYS B 149 -1 N PHE B 146 O GLN B 163 SHEET 6 D 8 TYR B 249 LEU B 253 -1 O LEU B 253 N VAL B 145 SHEET 7 D 8 TRP B 257 PRO B 262 -1 O VAL B 261 N ASN B 250 SHEET 8 D 8 PHE B 204 PRO B 207 -1 N LEU B 206 O ILE B 258 SSBOND 1 CYS A 140 CYS B 140 1555 1565 2.07 SITE 1 AC1 4 HIS A 152 HIS A 265 ALA A 266 LYS A 267 SITE 1 AC2 12 LEU A 50 ASN A 92 PHE A 94 VAL A 96 SITE 2 AC2 12 HIS A 100 MET A 165 ASN A 277 THR A 279 SITE 3 AC2 12 MET A 284 LEU A 286 LYS A 288 AMP A 403 SITE 1 AC3 13 PRO A 67 PHE A 68 LEU A 91 ASN A 92 SITE 2 AC3 13 LYS A 93 ASN A 148 GLY A 154 SER A 155 SITE 3 AC3 13 SER A 156 GLN A 157 HIS A 161 GLN A 163 SITE 4 AC3 13 AMP A 402 SITE 1 AC4 13 LEU B 75 LEU B 91 ASN B 92 LYS B 93 SITE 2 AC4 13 PHE B 94 LEU B 102 ASN B 148 GLY B 154 SITE 3 AC4 13 SER B 155 SER B 156 HIS B 161 GLN B 163 SITE 4 AC4 13 AMP B 402 SITE 1 AC5 12 ASN B 92 PHE B 94 VAL B 96 VAL B 97 SITE 2 AC5 12 HIS B 100 GLN B 163 MET B 165 THR B 279 SITE 3 AC5 12 MET B 284 LYS B 288 AMP B 401 HOH B 501 CRYST1 52.846 70.327 174.237 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018923 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005739 0.00000