HEADER STRUCTURAL PROTEIN 29-NOV-12 4I61 TITLE CRYSTAL STRUCTURE OF A TRIMERIC BACTERIAL MICROCOMPARTMENT SHELL TITLE 2 PROTEIN PDUB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPANEDIOL UTILIZATION PROTEIN PDUB; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS REUTERI; SOURCE 3 ORGANISM_TAXID: 491077; SOURCE 4 STRAIN: ATCC 55730 / SD2112; SOURCE 5 GENE: HMPREF0538_20934, PDUB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS BMC DOMAIN, SHELL PROTEIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.H.PANG,R.W.PICKERSGILL REVDAT 2 20-SEP-23 4I61 1 SEQADV REVDAT 1 26-MAR-14 4I61 0 JRNL AUTH A.H.PANG,M.B.PRENTICE,R.W.PICKERSGILL JRNL TITL PROPIONALDEHYDE DOES NOT BIND TO PDUB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 70684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3749 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5185 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 272 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4989 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.925 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5195 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7042 ; 1.982 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 705 ; 6.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;35.288 ;24.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 853 ;12.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;14.812 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 791 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3971 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3420 ; 1.244 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5458 ; 1.920 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1775 ; 3.418 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1584 ; 5.595 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4I61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SILICON 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74480 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 59.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 9.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 0.1020 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.70300 REMARK 200 R SYM FOR SHELL (I) : 0.39300 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4FAY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, 1.4 M SODIUM REMARK 280 ACETATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.54500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.54500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.50500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.77500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.50500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.77500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.54500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.50500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.77500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.54500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.50500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.77500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 470 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 PRO A -12 REMARK 465 PRO A -11 REMARK 465 LYS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 3 REMARK 465 PHE A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 THR A 10 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 PRO B -12 REMARK 465 PRO B -11 REMARK 465 LYS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ASP B 3 REMARK 465 PHE B 4 REMARK 465 LEU B 5 REMARK 465 ASN B 6 REMARK 465 SER B 7 REMARK 465 THR B 8 REMARK 465 SER B 9 REMARK 465 THR B 10 REMARK 465 LYS B 238 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 PRO C -12 REMARK 465 PRO C -11 REMARK 465 LYS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 ASP C 3 REMARK 465 PHE C 4 REMARK 465 LEU C 5 REMARK 465 ASN C 6 REMARK 465 SER C 7 REMARK 465 THR C 8 REMARK 465 SER C 9 REMARK 465 THR C 10 REMARK 465 LYS C 238 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 185 CB SER A 185 OG 0.082 REMARK 500 GLN A 209 CG GLN A 209 CD 0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 109 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG C 82 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP C 83 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG C 109 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 57 -59.66 -127.58 REMARK 500 ASP A 83 -114.14 -154.36 REMARK 500 ALA A 139 -154.72 -117.82 REMARK 500 SER A 191 56.80 -93.32 REMARK 500 ASN A 194 45.55 -103.72 REMARK 500 ALA B 57 -62.91 -128.42 REMARK 500 ASP B 83 -113.40 -159.99 REMARK 500 ALA B 139 -162.21 -117.36 REMARK 500 ASN B 194 45.39 -97.96 REMARK 500 ALA C 57 -56.65 -127.52 REMARK 500 ASP C 83 -115.98 -155.23 REMARK 500 ALA C 139 -164.21 -116.74 REMARK 500 SER C 191 50.33 -93.81 REMARK 500 ASN C 194 45.75 -107.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FAY RELATED DB: PDB REMARK 900 THE SAME PROTEIN BUT WITHOUT GLYCEROL. PROPIONALDEHYDE IS USED AS REMARK 900 CRYOPROTECTANT INSTEAD OF GLYCEROL. DBREF 4I61 A 1 238 UNP F8DQ39 F8DQ39_LACRS 1 238 DBREF 4I61 B 1 238 UNP F8DQ39 F8DQ39_LACRS 1 238 DBREF 4I61 C 1 238 UNP F8DQ39 F8DQ39_LACRS 1 238 SEQADV 4I61 MET A -19 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 GLY A -18 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER A -17 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER A -16 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS A -15 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS A -14 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS A -13 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 PRO A -12 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 PRO A -11 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 LYS A -10 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER A -9 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER A -8 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 GLY A -7 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 LEU A -6 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 VAL A -5 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 PRO A -4 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 ARG A -3 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 GLY A -2 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER A -1 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS A 0 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 MET B -19 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 GLY B -18 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER B -17 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER B -16 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS B -15 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS B -14 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS B -13 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 PRO B -12 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 PRO B -11 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 LYS B -10 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER B -9 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER B -8 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 GLY B -7 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 LEU B -6 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 VAL B -5 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 PRO B -4 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 ARG B -3 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 GLY B -2 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER B -1 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS B 0 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 MET C -19 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 GLY C -18 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER C -17 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER C -16 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS C -15 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS C -14 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS C -13 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 PRO C -12 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 PRO C -11 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 LYS C -10 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER C -9 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER C -8 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 GLY C -7 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 LEU C -6 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 VAL C -5 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 PRO C -4 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 ARG C -3 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 GLY C -2 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 SER C -1 UNP F8DQ39 EXPRESSION TAG SEQADV 4I61 HIS C 0 UNP F8DQ39 EXPRESSION TAG SEQRES 1 A 258 MET GLY SER SER HIS HIS HIS PRO PRO LYS SER SER GLY SEQRES 2 A 258 LEU VAL PRO ARG GLY SER HIS MET ASN ASP PHE LEU ASN SEQRES 3 A 258 SER THR SER THR VAL PRO GLU PHE VAL GLY ALA SER GLU SEQRES 4 A 258 ILE GLY ASP THR ILE GLY MET VAL ILE PRO ARG VAL ASP SEQRES 5 A 258 GLN GLN LEU LEU ASP LYS LEU HIS VAL THR LYS GLN TYR SEQRES 6 A 258 LYS THR LEU GLY ILE LEU SER ASP ARG THR GLY ALA GLY SEQRES 7 A 258 PRO GLN ILE MET ALA MET ASP GLU GLY ILE LYS ALA THR SEQRES 8 A 258 ASN MET GLU CYS ILE ASP VAL GLU TRP PRO ARG ASP THR SEQRES 9 A 258 LYS GLY GLY GLY GLY HIS GLY CYS LEU ILE ILE ILE GLY SEQRES 10 A 258 GLY ASP ASP PRO ALA ASP ALA ARG GLN ALA ILE ARG VAL SEQRES 11 A 258 ALA LEU ASP ASN LEU HIS ARG THR PHE GLY ASP VAL TYR SEQRES 12 A 258 ASN ALA LYS ALA GLY HIS LEU GLU LEU GLN PHE THR ALA SEQRES 13 A 258 ARG ALA ALA GLY ALA ALA HIS LEU GLY LEU GLY ALA VAL SEQRES 14 A 258 GLU GLY LYS ALA PHE GLY LEU ILE CYS GLY CYS PRO SER SEQRES 15 A 258 GLY ILE GLY VAL VAL MET GLY ASP LYS ALA LEU LYS THR SEQRES 16 A 258 ALA GLY VAL GLU PRO LEU ASN PHE THR SER PRO SER HIS SEQRES 17 A 258 GLY THR SER PHE SER ASN GLU GLY CYS LEU THR ILE THR SEQRES 18 A 258 GLY ASP SER GLY ALA VAL ARG GLN ALA VAL MET ALA GLY SEQRES 19 A 258 ARG GLU VAL GLY LEU LYS LEU LEU SER GLN PHE GLY GLU SEQRES 20 A 258 GLU PRO VAL ASN ASP PHE PRO SER TYR ILE LYS SEQRES 1 B 258 MET GLY SER SER HIS HIS HIS PRO PRO LYS SER SER GLY SEQRES 2 B 258 LEU VAL PRO ARG GLY SER HIS MET ASN ASP PHE LEU ASN SEQRES 3 B 258 SER THR SER THR VAL PRO GLU PHE VAL GLY ALA SER GLU SEQRES 4 B 258 ILE GLY ASP THR ILE GLY MET VAL ILE PRO ARG VAL ASP SEQRES 5 B 258 GLN GLN LEU LEU ASP LYS LEU HIS VAL THR LYS GLN TYR SEQRES 6 B 258 LYS THR LEU GLY ILE LEU SER ASP ARG THR GLY ALA GLY SEQRES 7 B 258 PRO GLN ILE MET ALA MET ASP GLU GLY ILE LYS ALA THR SEQRES 8 B 258 ASN MET GLU CYS ILE ASP VAL GLU TRP PRO ARG ASP THR SEQRES 9 B 258 LYS GLY GLY GLY GLY HIS GLY CYS LEU ILE ILE ILE GLY SEQRES 10 B 258 GLY ASP ASP PRO ALA ASP ALA ARG GLN ALA ILE ARG VAL SEQRES 11 B 258 ALA LEU ASP ASN LEU HIS ARG THR PHE GLY ASP VAL TYR SEQRES 12 B 258 ASN ALA LYS ALA GLY HIS LEU GLU LEU GLN PHE THR ALA SEQRES 13 B 258 ARG ALA ALA GLY ALA ALA HIS LEU GLY LEU GLY ALA VAL SEQRES 14 B 258 GLU GLY LYS ALA PHE GLY LEU ILE CYS GLY CYS PRO SER SEQRES 15 B 258 GLY ILE GLY VAL VAL MET GLY ASP LYS ALA LEU LYS THR SEQRES 16 B 258 ALA GLY VAL GLU PRO LEU ASN PHE THR SER PRO SER HIS SEQRES 17 B 258 GLY THR SER PHE SER ASN GLU GLY CYS LEU THR ILE THR SEQRES 18 B 258 GLY ASP SER GLY ALA VAL ARG GLN ALA VAL MET ALA GLY SEQRES 19 B 258 ARG GLU VAL GLY LEU LYS LEU LEU SER GLN PHE GLY GLU SEQRES 20 B 258 GLU PRO VAL ASN ASP PHE PRO SER TYR ILE LYS SEQRES 1 C 258 MET GLY SER SER HIS HIS HIS PRO PRO LYS SER SER GLY SEQRES 2 C 258 LEU VAL PRO ARG GLY SER HIS MET ASN ASP PHE LEU ASN SEQRES 3 C 258 SER THR SER THR VAL PRO GLU PHE VAL GLY ALA SER GLU SEQRES 4 C 258 ILE GLY ASP THR ILE GLY MET VAL ILE PRO ARG VAL ASP SEQRES 5 C 258 GLN GLN LEU LEU ASP LYS LEU HIS VAL THR LYS GLN TYR SEQRES 6 C 258 LYS THR LEU GLY ILE LEU SER ASP ARG THR GLY ALA GLY SEQRES 7 C 258 PRO GLN ILE MET ALA MET ASP GLU GLY ILE LYS ALA THR SEQRES 8 C 258 ASN MET GLU CYS ILE ASP VAL GLU TRP PRO ARG ASP THR SEQRES 9 C 258 LYS GLY GLY GLY GLY HIS GLY CYS LEU ILE ILE ILE GLY SEQRES 10 C 258 GLY ASP ASP PRO ALA ASP ALA ARG GLN ALA ILE ARG VAL SEQRES 11 C 258 ALA LEU ASP ASN LEU HIS ARG THR PHE GLY ASP VAL TYR SEQRES 12 C 258 ASN ALA LYS ALA GLY HIS LEU GLU LEU GLN PHE THR ALA SEQRES 13 C 258 ARG ALA ALA GLY ALA ALA HIS LEU GLY LEU GLY ALA VAL SEQRES 14 C 258 GLU GLY LYS ALA PHE GLY LEU ILE CYS GLY CYS PRO SER SEQRES 15 C 258 GLY ILE GLY VAL VAL MET GLY ASP LYS ALA LEU LYS THR SEQRES 16 C 258 ALA GLY VAL GLU PRO LEU ASN PHE THR SER PRO SER HIS SEQRES 17 C 258 GLY THR SER PHE SER ASN GLU GLY CYS LEU THR ILE THR SEQRES 18 C 258 GLY ASP SER GLY ALA VAL ARG GLN ALA VAL MET ALA GLY SEQRES 19 C 258 ARG GLU VAL GLY LEU LYS LEU LEU SER GLN PHE GLY GLU SEQRES 20 C 258 GLU PRO VAL ASN ASP PHE PRO SER TYR ILE LYS FORMUL 4 HOH *780(H2 O) HELIX 1 1 GLU A 19 GLY A 21 5 3 HELIX 2 2 ASP A 32 ASP A 37 1 6 HELIX 3 3 ALA A 57 ALA A 70 1 14 HELIX 4 4 ASP A 83 GLY A 87 5 5 HELIX 5 5 ASP A 100 PHE A 119 1 20 HELIX 6 6 ALA A 139 GLY A 147 1 9 HELIX 7 7 PRO A 161 LYS A 174 1 14 HELIX 8 8 ASP A 203 SER A 223 1 21 HELIX 9 9 GLN A 224 GLY A 226 5 3 HELIX 10 10 GLU B 19 GLY B 21 5 3 HELIX 11 11 ASP B 32 ASP B 37 1 6 HELIX 12 12 ALA B 57 ALA B 70 1 14 HELIX 13 13 ASP B 83 GLY B 87 5 5 HELIX 14 14 ASP B 100 PHE B 119 1 20 HELIX 15 15 ALA B 139 GLY B 147 1 9 HELIX 16 16 PRO B 161 LYS B 174 1 14 HELIX 17 17 ASP B 203 SER B 223 1 21 HELIX 18 18 GLN B 224 GLY B 226 5 3 HELIX 19 19 ASP C 32 LEU C 39 1 8 HELIX 20 20 ALA C 57 ALA C 70 1 14 HELIX 21 21 ASP C 100 PHE C 119 1 20 HELIX 22 22 ALA C 139 GLY C 147 1 9 HELIX 23 23 SER C 162 LYS C 174 1 13 HELIX 24 24 ASP C 203 SER C 223 1 21 HELIX 25 25 GLN C 224 GLY C 226 5 3 SHEET 1 A 5 PHE A 14 SER A 18 0 SHEET 2 A 5 THR A 23 ILE A 28 -1 O GLY A 25 N GLY A 16 SHEET 3 A 5 THR A 47 ASP A 53 -1 O ILE A 50 N MET A 26 SHEET 4 A 5 CYS A 92 GLY A 98 -1 O ILE A 94 N LEU A 51 SHEET 5 A 5 GLU A 74 GLU A 79 -1 N GLU A 79 O LEU A 93 SHEET 1 B 5 VAL A 122 ALA A 125 0 SHEET 2 B 5 GLY A 128 THR A 135 -1 O LEU A 130 N TYR A 123 SHEET 3 B 5 PHE A 154 CYS A 160 -1 O CYS A 158 N GLU A 131 SHEET 4 B 5 GLY A 196 THR A 201 -1 O LEU A 198 N ILE A 157 SHEET 5 B 5 GLU A 179 THR A 184 -1 N LEU A 181 O THR A 199 SHEET 1 C 5 PHE B 14 SER B 18 0 SHEET 2 C 5 THR B 23 ILE B 28 -1 O GLY B 25 N GLY B 16 SHEET 3 C 5 THR B 47 ASP B 53 -1 O ILE B 50 N MET B 26 SHEET 4 C 5 CYS B 92 GLY B 98 -1 O ILE B 94 N LEU B 51 SHEET 5 C 5 GLU B 74 GLU B 79 -1 N GLU B 79 O LEU B 93 SHEET 1 D 5 VAL B 122 ALA B 125 0 SHEET 2 D 5 GLY B 128 THR B 135 -1 O LEU B 130 N TYR B 123 SHEET 3 D 5 PHE B 154 CYS B 160 -1 O CYS B 158 N GLU B 131 SHEET 4 D 5 GLY B 196 THR B 201 -1 O LEU B 198 N ILE B 157 SHEET 5 D 5 GLU B 179 THR B 184 -1 N LEU B 181 O THR B 199 SHEET 1 E 5 PHE C 14 SER C 18 0 SHEET 2 E 5 THR C 23 ILE C 28 -1 O THR C 23 N SER C 18 SHEET 3 E 5 THR C 47 ASP C 53 -1 O ILE C 50 N MET C 26 SHEET 4 E 5 CYS C 92 GLY C 98 -1 O ILE C 94 N LEU C 51 SHEET 5 E 5 GLU C 74 GLU C 79 -1 N GLU C 74 O GLY C 97 SHEET 1 F 5 VAL C 122 ASN C 124 0 SHEET 2 F 5 HIS C 129 THR C 135 -1 O LEU C 130 N TYR C 123 SHEET 3 F 5 PHE C 154 CYS C 160 -1 O CYS C 158 N GLU C 131 SHEET 4 F 5 GLY C 196 THR C 201 -1 O LEU C 198 N ILE C 157 SHEET 5 F 5 GLU C 179 THR C 184 -1 N LEU C 181 O THR C 199 CISPEP 1 CYS A 160 PRO A 161 0 0.52 CISPEP 2 CYS B 160 PRO B 161 0 3.07 CISPEP 3 CYS C 160 PRO C 161 0 1.80 CRYST1 69.010 119.550 147.090 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014491 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006799 0.00000