data_4I67 # _entry.id 4I67 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4I67 NDB NA2153 RCSB RCSB076354 WWPDB D_1000076354 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3I31 . unspecified PDB 4I68 . unspecified PDB 4I69 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4I67 _pdbx_database_status.recvd_initial_deposition_date 2012-11-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rudolph, M.G.' 1 'Klostermeier, D.' 2 # _citation.id primary _citation.title 'Recognition of two distinct elements in the RNA substrate by the RNA-binding domain of the T. thermophilus DEAD box helicase Hera.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 41 _citation.page_first 6259 _citation.page_last 6272 _citation.year 2013 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23625962 _citation.pdbx_database_id_DOI 10.1093/nar/gkt323 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Steimer, L.' 1 primary 'Wurm, J.P.' 2 primary 'Linden, M.H.' 3 primary 'Rudolph, M.G.' 4 primary 'Wohnert, J.' 5 primary 'Klostermeier, D.' 6 # _cell.entry_id 4I67 _cell.length_a 88.435 _cell.length_b 88.435 _cell.length_c 28.943 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4I67 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Heat resistant RNA dependent ATPase' 9578.012 1 3.6.4.13 ? 'RRM domain (UNP residues 431-517)' ? 2 polymer syn "5'-R(P*GP*GP*GP*(RPC))-3'" 1375.821 1 ? ? ? '23S ribosomal RNA fragment' 3 water nat water 18.015 11 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HERA RNA helicase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AERSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPARRVEGLLEIPSR TRRPARA ; ;AERSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPARRVEGLLEIPSR TRRPARA ; A ? 2 polyribonucleotide no yes 'GGG(RPC)' GGGX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLU n 1 3 ARG n 1 4 SER n 1 5 LEU n 1 6 LEU n 1 7 THR n 1 8 GLY n 1 9 GLU n 1 10 GLU n 1 11 GLY n 1 12 TRP n 1 13 ARG n 1 14 THR n 1 15 TYR n 1 16 LYS n 1 17 ALA n 1 18 THR n 1 19 GLY n 1 20 PRO n 1 21 ARG n 1 22 LEU n 1 23 SER n 1 24 LEU n 1 25 PRO n 1 26 ARG n 1 27 LEU n 1 28 VAL n 1 29 ALA n 1 30 LEU n 1 31 LEU n 1 32 LYS n 1 33 GLY n 1 34 GLN n 1 35 GLY n 1 36 LEU n 1 37 GLU n 1 38 VAL n 1 39 GLY n 1 40 LYS n 1 41 VAL n 1 42 ALA n 1 43 GLU n 1 44 ALA n 1 45 GLU n 1 46 GLY n 1 47 GLY n 1 48 PHE n 1 49 TYR n 1 50 VAL n 1 51 ASP n 1 52 LEU n 1 53 ARG n 1 54 PRO n 1 55 GLU n 1 56 ALA n 1 57 ARG n 1 58 PRO n 1 59 GLU n 1 60 VAL n 1 61 ALA n 1 62 GLY n 1 63 LEU n 1 64 ARG n 1 65 LEU n 1 66 GLU n 1 67 PRO n 1 68 ALA n 1 69 ARG n 1 70 ARG n 1 71 VAL n 1 72 GLU n 1 73 GLY n 1 74 LEU n 1 75 LEU n 1 76 GLU n 1 77 ILE n 1 78 PRO n 1 79 SER n 1 80 ARG n 1 81 THR n 1 82 ARG n 1 83 ARG n 1 84 PRO n 1 85 ALA n 1 86 ARG n 1 87 ALA n 2 1 G n 2 2 G n 2 3 G n 2 4 RPC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TT_C1895 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q72GF3_THET2 Q72GF3 1 ;AERSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPARRVEGLLEIPSR TRRPARA ; 431 ? 2 PDB 4I67 4I67 2 'GGG(RPC)' 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4I67 A 1 ? 87 ? Q72GF3 431 ? 517 ? 424 510 2 2 4I67 B 1 ? 4 ? 4I67 1 ? 4 ? 1 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RPC 'RNA linking' n ;cytidine 3',5'-bis(dihydrogen phosphate) ; ? 'C9 H15 N3 O11 P2' 403.176 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4I67 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.98 _exptl_crystal.density_percent_sol 58.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details ;1.06 M sodium malonate, pH 6.0, 0.1 M Tris-HCl, pH 7.5, 0.13 M potassium/sodium phosphate, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range 6-7.5 # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-06-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.99997 1.0 2 1 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 0.99997 _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 4I67 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 44.20 _reflns.d_resolution_high 2.33 _reflns.number_obs 5963 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value 0.052 _reflns.pdbx_netI_over_sigmaI 19.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.76 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.33 _reflns_shell.d_res_low 2.43 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.868 _reflns_shell.pdbx_Rsym_value 0.868 _reflns_shell.meanI_over_sigI_obs 1.2 _reflns_shell.pdbx_redundancy 9.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4I67 _refine.ls_number_reflns_obs 5726 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.293 _refine.ls_d_res_high 2.330 _refine.ls_percent_reflns_obs 99.91 _refine.ls_R_factor_obs 0.1794 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1769 _refine.ls_R_factor_R_free 0.2338 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.54 _refine.ls_number_reflns_R_free 260 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3I31' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.34 _refine.pdbx_overall_phase_error 32.49 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 585 _refine_hist.pdbx_number_atoms_nucleic_acid 94 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 690 _refine_hist.d_res_high 2.330 _refine_hist.d_res_low 38.293 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 698 ? 'X-RAY DIFFRACTION' f_angle_d 1.064 ? ? 964 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 16.066 ? ? 280 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.062 ? ? 109 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 110 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.330 2.9358 2702 0.2720 100.00 0.3757 . . 117 . . . . 'X-RAY DIFFRACTION' . 2.9358 38.2986 2764 0.1620 100.00 0.2136 . . 143 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4I67 _struct.title 'Crystal structure of the RRM domain of RNA helicase HERA from T. thermophilus in complex with GGGC RNA' _struct.pdbx_descriptor 'Heat resistant RNA dependent ATPase (E.C.3.6.4.13)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4I67 _struct_keywords.pdbx_keywords HYDROLASE/RNA _struct_keywords.text 'unwinding, ATPase, heat resistant, RNA recognition motif, RNA binding, DEAD box protein, HYDROLASE-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 23 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 34 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 446 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 457 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id G _struct_conn.ptnr1_label_seq_id 3 _struct_conn.ptnr1_label_atom_id "O3'" _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id RPC _struct_conn.ptnr2_label_seq_id 4 _struct_conn.ptnr2_label_atom_id P _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id G _struct_conn.ptnr1_auth_seq_id 3 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id RPC _struct_conn.ptnr2_auth_seq_id 4 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.591 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 38 ? ALA A 44 ? VAL A 461 ALA A 467 A 2 GLY A 47 ? LEU A 52 ? GLY A 470 LEU A 475 A 3 ARG A 13 ? THR A 18 ? ARG A 436 THR A 441 A 4 ARG A 64 ? PRO A 67 ? ARG A 487 PRO A 490 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 44 ? N ALA A 467 O GLY A 47 ? O GLY A 470 A 2 3 O PHE A 48 ? O PHE A 471 N ALA A 17 ? N ALA A 440 A 3 4 N LYS A 16 ? N LYS A 439 O GLU A 66 ? O GLU A 489 # _database_PDB_matrix.entry_id 4I67 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4I67 _atom_sites.fract_transf_matrix[1][1] 0.011308 _atom_sites.fract_transf_matrix[1][2] 0.006529 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013057 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.034551 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 424 424 ALA ALA A . n A 1 2 GLU 2 425 425 GLU GLU A . n A 1 3 ARG 3 426 426 ARG ARG A . n A 1 4 SER 4 427 427 SER SER A . n A 1 5 LEU 5 428 428 LEU LEU A . n A 1 6 LEU 6 429 429 LEU LEU A . n A 1 7 THR 7 430 430 THR THR A . n A 1 8 GLY 8 431 431 GLY GLY A . n A 1 9 GLU 9 432 432 GLU GLU A . n A 1 10 GLU 10 433 433 GLU GLU A . n A 1 11 GLY 11 434 434 GLY GLY A . n A 1 12 TRP 12 435 435 TRP TRP A . n A 1 13 ARG 13 436 436 ARG ARG A . n A 1 14 THR 14 437 437 THR THR A . n A 1 15 TYR 15 438 438 TYR TYR A . n A 1 16 LYS 16 439 439 LYS LYS A . n A 1 17 ALA 17 440 440 ALA ALA A . n A 1 18 THR 18 441 441 THR THR A . n A 1 19 GLY 19 442 442 GLY GLY A . n A 1 20 PRO 20 443 443 PRO PRO A . n A 1 21 ARG 21 444 444 ARG ARG A . n A 1 22 LEU 22 445 445 LEU LEU A . n A 1 23 SER 23 446 446 SER SER A . n A 1 24 LEU 24 447 447 LEU LEU A . n A 1 25 PRO 25 448 448 PRO PRO A . n A 1 26 ARG 26 449 449 ARG ARG A . n A 1 27 LEU 27 450 450 LEU LEU A . n A 1 28 VAL 28 451 451 VAL VAL A . n A 1 29 ALA 29 452 452 ALA ALA A . n A 1 30 LEU 30 453 453 LEU LEU A . n A 1 31 LEU 31 454 454 LEU LEU A . n A 1 32 LYS 32 455 455 LYS LYS A . n A 1 33 GLY 33 456 456 GLY GLY A . n A 1 34 GLN 34 457 457 GLN GLN A . n A 1 35 GLY 35 458 458 GLY GLY A . n A 1 36 LEU 36 459 459 LEU LEU A . n A 1 37 GLU 37 460 460 GLU GLU A . n A 1 38 VAL 38 461 461 VAL VAL A . n A 1 39 GLY 39 462 462 GLY GLY A . n A 1 40 LYS 40 463 463 LYS LYS A . n A 1 41 VAL 41 464 464 VAL VAL A . n A 1 42 ALA 42 465 465 ALA ALA A . n A 1 43 GLU 43 466 466 GLU GLU A . n A 1 44 ALA 44 467 467 ALA ALA A . n A 1 45 GLU 45 468 468 GLU GLU A . n A 1 46 GLY 46 469 469 GLY GLY A . n A 1 47 GLY 47 470 470 GLY GLY A . n A 1 48 PHE 48 471 471 PHE PHE A . n A 1 49 TYR 49 472 472 TYR TYR A . n A 1 50 VAL 50 473 473 VAL VAL A . n A 1 51 ASP 51 474 474 ASP ASP A . n A 1 52 LEU 52 475 475 LEU LEU A . n A 1 53 ARG 53 476 476 ARG ARG A . n A 1 54 PRO 54 477 477 PRO PRO A . n A 1 55 GLU 55 478 478 GLU GLU A . n A 1 56 ALA 56 479 479 ALA ALA A . n A 1 57 ARG 57 480 480 ARG ARG A . n A 1 58 PRO 58 481 481 PRO PRO A . n A 1 59 GLU 59 482 482 GLU GLU A . n A 1 60 VAL 60 483 483 VAL VAL A . n A 1 61 ALA 61 484 484 ALA ALA A . n A 1 62 GLY 62 485 485 GLY GLY A . n A 1 63 LEU 63 486 486 LEU LEU A . n A 1 64 ARG 64 487 487 ARG ARG A . n A 1 65 LEU 65 488 488 LEU LEU A . n A 1 66 GLU 66 489 489 GLU GLU A . n A 1 67 PRO 67 490 490 PRO PRO A . n A 1 68 ALA 68 491 491 ALA ALA A . n A 1 69 ARG 69 492 492 ARG ARG A . n A 1 70 ARG 70 493 493 ARG ARG A . n A 1 71 VAL 71 494 494 VAL VAL A . n A 1 72 GLU 72 495 495 GLU GLU A . n A 1 73 GLY 73 496 496 GLY GLY A . n A 1 74 LEU 74 497 497 LEU LEU A . n A 1 75 LEU 75 498 498 LEU LEU A . n A 1 76 GLU 76 499 499 GLU GLU A . n A 1 77 ILE 77 500 ? ? ? A . n A 1 78 PRO 78 501 ? ? ? A . n A 1 79 SER 79 502 ? ? ? A . n A 1 80 ARG 80 503 ? ? ? A . n A 1 81 THR 81 504 ? ? ? A . n A 1 82 ARG 82 505 ? ? ? A . n A 1 83 ARG 83 506 ? ? ? A . n A 1 84 PRO 84 507 ? ? ? A . n A 1 85 ALA 85 508 ? ? ? A . n A 1 86 ARG 86 509 ? ? ? A . n A 1 87 ALA 87 510 ? ? ? A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 G 3 3 3 G G B . n B 2 4 RPC 4 4 4 RPC XXX B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 601 1 HOH HOH A . C 3 HOH 2 602 2 HOH HOH A . C 3 HOH 3 603 3 HOH HOH A . C 3 HOH 4 604 4 HOH HOH A . C 3 HOH 5 605 6 HOH HOH A . C 3 HOH 6 606 7 HOH HOH A . C 3 HOH 7 607 8 HOH HOH A . C 3 HOH 8 608 9 HOH HOH A . C 3 HOH 9 609 10 HOH HOH A . C 3 HOH 10 610 11 HOH HOH A . D 3 HOH 1 101 5 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id RPC _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id RPC _pdbx_struct_mod_residue.auth_seq_id 4 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id C _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-24 2 'Structure model' 1 1 2013-05-15 3 'Structure model' 1 2 2013-07-17 4 'Structure model' 1 3 2014-11-26 5 'Structure model' 1 4 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 5 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 39.3680 -9.2319 -5.4987 0.6042 0.5124 0.4608 0.0346 0.0633 -0.0763 9.1949 9.4716 9.2553 0.8720 2.3457 -3.4924 0.0381 -0.5041 0.1604 0.0715 -0.0933 0.2353 0.3014 -0.6083 0.0172 'X-RAY DIFFRACTION' 2 ? refined 45.2416 -14.5341 -15.3797 1.4534 0.9635 0.9436 0.2667 0.1108 -0.0017 3.4657 3.0411 9.4296 -2.8465 -3.6948 1.0739 -0.8467 1.1760 -1.0250 -1.0647 -0.5748 -0.1318 1.4105 0.1863 1.0948 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'B' ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 PHENIX refinement '(phenix.refine: 1.8_1069)' ? 2 XDS 'data reduction' '(VERSION March 15' ? 3 SADABS 'data scaling' . ? 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 425 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -164.58 _pdbx_validate_torsion.psi 108.52 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 500 ? A ILE 77 2 1 Y 1 A PRO 501 ? A PRO 78 3 1 Y 1 A SER 502 ? A SER 79 4 1 Y 1 A ARG 503 ? A ARG 80 5 1 Y 1 A THR 504 ? A THR 81 6 1 Y 1 A ARG 505 ? A ARG 82 7 1 Y 1 A ARG 506 ? A ARG 83 8 1 Y 1 A PRO 507 ? A PRO 84 9 1 Y 1 A ALA 508 ? A ALA 85 10 1 Y 1 A ARG 509 ? A ARG 86 11 1 Y 1 A ALA 510 ? A ALA 87 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #