HEADER METAL TRANSPORT 29-NOV-12 4I6I TITLE CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 (RESIDUES 1-559) TITLE 2 DISEASE MUTANT R45C COMPND MOL_ID: 1; COMPND 2 MOLECULE: RYANODINE RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DISEASE HOT SPOT, RESIDUES 1-559; COMPND 5 SYNONYM: RYR-1, RYR1, SKELETAL MUSCLE CALCIUM RELEASE CHANNEL, COMPND 6 SKELETAL MUSCLE RYANODINE RECEPTOR, SKELETAL MUSCLE-TYPE RYANODINE COMPND 7 RECEPTOR, TYPE 1 RYANODINE RECEPTOR; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 GENE: RYR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA KEYWDS CALCIUM CHANNEL, SR/ER MEMBRANE, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR L.KIMLICKA,F.VAN PETEGEM REVDAT 3 20-SEP-23 4I6I 1 SEQADV REVDAT 2 06-MAR-13 4I6I 1 JRNL REVDAT 1 20-FEB-13 4I6I 0 JRNL AUTH L.KIMLICKA,K.LAU,C.C.TUNG,F.VAN PETEGEM JRNL TITL DISEASE MUTATIONS IN THE RYANODINE RECEPTOR N-TERMINAL JRNL TITL 2 REGION COUPLE TO A MOBILE INTERSUBUNIT INTERFACE. JRNL REF NAT COMMUN V. 4 1506 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23422674 JRNL DOI 10.1038/NCOMMS2501 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1804 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2478 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3297 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.43000 REMARK 3 B22 (A**2) : 1.43000 REMARK 3 B33 (A**2) : -2.15000 REMARK 3 B12 (A**2) : 0.72000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.265 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.465 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.905 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3362 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4573 ; 0.902 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 4.786 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;31.959 ;22.698 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 485 ;15.903 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.433 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2512 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2233 ; 0.226 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3494 ; 0.435 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1129 ; 0.553 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1078 ; 0.946 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): -23.2990 50.2720 20.4180 REMARK 3 T TENSOR REMARK 3 T11: 0.2791 T22: 0.9321 REMARK 3 T33: 0.1432 T12: -0.4832 REMARK 3 T13: 0.0805 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 3.5097 L22: 3.3184 REMARK 3 L33: 5.6641 L12: 0.8303 REMARK 3 L13: -0.9182 L23: -1.9840 REMARK 3 S TENSOR REMARK 3 S11: 0.2197 S12: -0.2060 S13: 0.2465 REMARK 3 S21: -0.0099 S22: -0.1618 S23: -0.1728 REMARK 3 S31: -0.9148 S32: 1.5683 S33: -0.0579 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 206 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): -40.8310 29.8210 35.6370 REMARK 3 T TENSOR REMARK 3 T11: 0.0148 T22: 0.2687 REMARK 3 T33: 0.1641 T12: 0.0472 REMARK 3 T13: -0.0105 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.8014 L22: 2.0493 REMARK 3 L33: 3.7359 L12: 0.6966 REMARK 3 L13: -0.1951 L23: -0.2324 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: -0.1480 S13: -0.1889 REMARK 3 S21: 0.0041 S22: -0.0329 S23: -0.1284 REMARK 3 S31: 0.2182 S32: 0.8110 S33: -0.0278 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 395 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8440 49.0070 51.8910 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 1.1959 REMARK 3 T33: 0.1726 T12: -0.5116 REMARK 3 T13: 0.0273 T23: -0.0842 REMARK 3 L TENSOR REMARK 3 L11: 3.6157 L22: 3.3024 REMARK 3 L33: 8.5893 L12: 1.0988 REMARK 3 L13: 0.0699 L23: 2.9104 REMARK 3 S TENSOR REMARK 3 S11: -0.3467 S12: 0.0102 S13: -0.0911 REMARK 3 S21: -0.2420 S22: 0.7142 S23: -0.3527 REMARK 3 S31: -0.9049 S32: 2.4487 S33: -0.3674 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4I6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALA REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36147 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XOA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0, EVAPORATION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.47550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 123.47550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 123.47550 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 123.47550 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 123.47550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 123.47550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 GLU A 8 REMARK 465 ASP A 9 REMARK 465 ASN A 84 REMARK 465 THR A 85 REMARK 465 VAL A 86 REMARK 465 GLU A 87 REMARK 465 ALA A 88 REMARK 465 GLY A 89 REMARK 465 VAL A 90 REMARK 465 GLU A 91 REMARK 465 SER A 92 REMARK 465 SER A 93 REMARK 465 GLN A 94 REMARK 465 GLY A 95 REMARK 465 GLY A 96 REMARK 465 THR A 122 REMARK 465 THR A 123 REMARK 465 SER A 124 REMARK 465 ARG A 125 REMARK 465 SER A 126 REMARK 465 MET A 127 REMARK 465 THR A 128 REMARK 465 ASP A 129 REMARK 465 ALA A 185 REMARK 465 SER A 186 REMARK 465 GLY A 187 REMARK 465 GLU A 188 REMARK 465 HIS A 226 REMARK 465 ALA A 326 REMARK 465 PRO A 327 REMARK 465 LYS A 328 REMARK 465 PRO A 362 REMARK 465 ASP A 363 REMARK 465 PRO A 364 REMARK 465 LYS A 365 REMARK 465 ALA A 366 REMARK 465 LEU A 367 REMARK 465 ARG A 368 REMARK 465 LEU A 369 REMARK 465 GLY A 370 REMARK 465 VAL A 371 REMARK 465 GLY A 423 REMARK 465 LYS A 424 REMARK 465 PRO A 425 REMARK 465 ARG A 426 REMARK 465 GLY A 427 REMARK 465 SER A 428 REMARK 465 GLY A 429 REMARK 465 PRO A 430 REMARK 465 PRO A 431 REMARK 465 ALA A 432 REMARK 465 GLY A 433 REMARK 465 GLU A 458 REMARK 465 LEU A 459 REMARK 465 GLN A 460 REMARK 465 HIS A 461 REMARK 465 GLU A 462 REMARK 465 GLU A 463 REMARK 465 LYS A 464 REMARK 465 THR A 499 REMARK 465 ALA A 500 REMARK 465 ALA A 501 REMARK 465 HIS A 502 REMARK 465 PHE A 503 REMARK 465 ALA A 504 REMARK 465 GLU A 505 REMARK 465 TYR A 506 REMARK 465 ALA A 507 REMARK 465 GLY A 508 REMARK 465 GLU A 509 REMARK 465 GLU A 510 REMARK 465 ALA A 511 REMARK 465 ALA A 512 REMARK 465 GLU A 513 REMARK 465 SER A 514 REMARK 465 ARG A 534 REMARK 465 ALA A 535 REMARK 465 ASN A 536 REMARK 465 CYS A 537 REMARK 465 ALA A 538 REMARK 465 LEU A 539 REMARK 465 PHE A 540 REMARK 465 SER A 541 REMARK 465 THR A 542 REMARK 465 ASN A 543 REMARK 465 LEU A 544 REMARK 465 ASP A 545 REMARK 465 TRP A 546 REMARK 465 VAL A 547 REMARK 465 VAL A 548 REMARK 465 SER A 549 REMARK 465 LYS A 550 REMARK 465 LEU A 551 REMARK 465 ASP A 552 REMARK 465 ARG A 553 REMARK 465 LEU A 554 REMARK 465 GLU A 555 REMARK 465 ALA A 556 REMARK 465 SER A 557 REMARK 465 SER A 558 REMARK 465 GLY A 559 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 VAL A 11 CG1 CG2 REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 17 CG OD1 OD2 REMARK 470 ASP A 18 CG OD1 OD2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 THR A 27 OG1 CG2 REMARK 470 VAL A 28 CG1 CG2 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 GLN A 32 CG CD OE1 NE2 REMARK 470 LEU A 33 CG CD1 CD2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 LEU A 35 CG CD1 CD2 REMARK 470 ASN A 44 CG OD1 ND2 REMARK 470 LEU A 46 CG CD1 CD2 REMARK 470 LEU A 49 CG CD1 CD2 REMARK 470 GLN A 56 CG CD OE1 NE2 REMARK 470 VAL A 75 CG1 CG2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 MET A 81 CG SD CE REMARK 470 ARG A 99 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LEU A 131 CG CD1 CD2 REMARK 470 PHE A 133 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 138 CG CD OE1 NE2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 ASP A 140 CG OD1 OD2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLN A 156 CG CD OE1 NE2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 190 CG CD OE1 NE2 REMARK 470 MET A 196 CG SD CE REMARK 470 MET A 227 CG SD CE REMARK 470 ASP A 228 CG OD1 OD2 REMARK 470 ASP A 237 CG OD1 OD2 REMARK 470 SER A 238 OG REMARK 470 ASP A 239 CG OD1 OD2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 ASP A 296 CG OD1 OD2 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 ASP A 324 CG OD1 OD2 REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 372 CG CD1 CD2 REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 GLN A 413 CG CD OE1 NE2 REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 SER A 420 OG REMARK 470 PHE A 421 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 436 CG CD1 CD2 REMARK 470 GLU A 439 CG CD OE1 OE2 REMARK 470 LEU A 443 CG CD1 CD2 REMARK 470 GLN A 446 CG CD OE1 NE2 REMARK 470 ASP A 447 CG OD1 OD2 REMARK 470 GLU A 453 CG CD OE1 OE2 REMARK 470 GLU A 457 CG CD OE1 OE2 REMARK 470 GLN A 465 CG CD OE1 NE2 REMARK 470 SER A 466 OG REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 LEU A 468 CG CD1 CD2 REMARK 470 ARG A 469 CG CD NE CZ NH1 NH2 REMARK 470 THR A 498 OG1 CG2 REMARK 470 LYS A 516 CG CD CE NZ REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 470 ILE A 518 CG1 CG2 CD1 REMARK 470 ASN A 520 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 0.78 80.77 REMARK 500 SER A 207 -155.21 -126.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XOA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL THREE DOMAINS OF THE SKELETAL REMARK 900 MUSCLE RYANODINE RECEPTOR (RYR1) REMARK 900 RELATED ID: 4I3N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 (RESIDUES 1-536) REMARK 900 MUTANT D61N REMARK 900 RELATED ID: 4I37 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 (RESIDUES 1-536) REMARK 900 MUTANT R402G REMARK 900 RELATED ID: 4I2S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 (RESIDUES 1-536) REMARK 900 MUTANT I404M REMARK 900 RELATED ID: 4I1E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 (RESIDUES 1-536) REMARK 900 MUTANT G249R REMARK 900 RELATED ID: 4I0Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 (RESIDUES 1-536) REMARK 900 MUTANT C36R REMARK 900 RELATED ID: 4I7I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 (RESIDUES 1-536) REMARK 900 MUTANT L14R REMARK 900 RELATED ID: 4I8M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 (RESIDUES 1-536) REMARK 900 MUTANT V219I REMARK 900 RELATED ID: 4I96 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 (RESIDUES 217-536) DBREF 4I6I A 1 559 UNP P11716 RYR1_RABIT 1 559 SEQADV 4I6I CYS A 45 UNP P11716 ARG 45 ENGINEERED MUTATION SEQRES 1 A 559 MET GLY ASP GLY GLY GLU GLY GLU ASP GLU VAL GLN PHE SEQRES 2 A 559 LEU ARG THR ASP ASP GLU VAL VAL LEU GLN CYS SER ALA SEQRES 3 A 559 THR VAL LEU LYS GLU GLN LEU LYS LEU CYS LEU ALA ALA SEQRES 4 A 559 GLU GLY PHE GLY ASN CYS LEU CYS PHE LEU GLU PRO THR SEQRES 5 A 559 SER ASN ALA GLN ASN VAL PRO PRO ASP LEU ALA ILE CYS SEQRES 6 A 559 CYS PHE THR LEU GLU GLN SER LEU SER VAL ARG ALA LEU SEQRES 7 A 559 GLN GLU MET LEU ALA ASN THR VAL GLU ALA GLY VAL GLU SEQRES 8 A 559 SER SER GLN GLY GLY GLY HIS ARG THR LEU LEU TYR GLY SEQRES 9 A 559 HIS ALA ILE LEU LEU ARG HIS ALA HIS SER ARG MET TYR SEQRES 10 A 559 LEU SER CYS LEU THR THR SER ARG SER MET THR ASP LYS SEQRES 11 A 559 LEU ALA PHE ASP VAL GLY LEU GLN GLU ASP ALA THR GLY SEQRES 12 A 559 GLU ALA CYS TRP TRP THR MET HIS PRO ALA SER LYS GLN SEQRES 13 A 559 ARG SER GLU GLY GLU LYS VAL ARG VAL GLY ASP ASP LEU SEQRES 14 A 559 ILE LEU VAL SER VAL SER SER GLU ARG TYR LEU HIS LEU SEQRES 15 A 559 SER THR ALA SER GLY GLU LEU GLN VAL ASP ALA SER PHE SEQRES 16 A 559 MET GLN THR LEU TRP ASN MET ASN PRO ILE CYS SER CYS SEQRES 17 A 559 CYS GLU GLU GLY TYR VAL THR GLY GLY HIS VAL LEU ARG SEQRES 18 A 559 LEU PHE HIS GLY HIS MET ASP GLU CYS LEU THR ILE SER SEQRES 19 A 559 ALA ALA ASP SER ASP ASP GLN ARG ARG LEU VAL TYR TYR SEQRES 20 A 559 GLU GLY GLY ALA VAL CYS THR HIS ALA ARG SER LEU TRP SEQRES 21 A 559 ARG LEU GLU PRO LEU ARG ILE SER TRP SER GLY SER HIS SEQRES 22 A 559 LEU ARG TRP GLY GLN PRO LEU ARG ILE ARG HIS VAL THR SEQRES 23 A 559 THR GLY ARG TYR LEU ALA LEU THR GLU ASP GLN GLY LEU SEQRES 24 A 559 VAL VAL VAL ASP ALA CYS LYS ALA HIS THR LYS ALA THR SEQRES 25 A 559 SER PHE CYS PHE ARG VAL SER LYS GLU LYS LEU ASP THR SEQRES 26 A 559 ALA PRO LYS ARG ASP VAL GLU GLY MET GLY PRO PRO GLU SEQRES 27 A 559 ILE LYS TYR GLY GLU SER LEU CYS PHE VAL GLN HIS VAL SEQRES 28 A 559 ALA SER GLY LEU TRP LEU THR TYR ALA ALA PRO ASP PRO SEQRES 29 A 559 LYS ALA LEU ARG LEU GLY VAL LEU LYS LYS LYS ALA ILE SEQRES 30 A 559 LEU HIS GLN GLU GLY HIS MET ASP ASP ALA LEU PHE LEU SEQRES 31 A 559 THR ARG CYS GLN GLN GLU GLU SER GLN ALA ALA ARG MET SEQRES 32 A 559 ILE HIS SER THR ALA GLY LEU TYR ASN GLN PHE ILE LYS SEQRES 33 A 559 GLY LEU ASP SER PHE SER GLY LYS PRO ARG GLY SER GLY SEQRES 34 A 559 PRO PRO ALA GLY PRO ALA LEU PRO ILE GLU ALA VAL ILE SEQRES 35 A 559 LEU SER LEU GLN ASP LEU ILE GLY TYR PHE GLU PRO PRO SEQRES 36 A 559 SER GLU GLU LEU GLN HIS GLU GLU LYS GLN SER LYS LEU SEQRES 37 A 559 ARG SER LEU ARG ASN ARG GLN SER LEU PHE GLN GLU GLU SEQRES 38 A 559 GLY MET LEU SER LEU VAL LEU ASN CYS ILE ASP ARG LEU SEQRES 39 A 559 ASN VAL TYR THR THR ALA ALA HIS PHE ALA GLU TYR ALA SEQRES 40 A 559 GLY GLU GLU ALA ALA GLU SER TRP LYS GLU ILE VAL ASN SEQRES 41 A 559 LEU LEU TYR GLU LEU LEU ALA SER LEU ILE ARG GLY ASN SEQRES 42 A 559 ARG ALA ASN CYS ALA LEU PHE SER THR ASN LEU ASP TRP SEQRES 43 A 559 VAL VAL SER LYS LEU ASP ARG LEU GLU ALA SER SER GLY FORMUL 2 HOH *56(H2 O) HELIX 1 1 ASP A 61 CYS A 65 5 5 HELIX 2 2 SER A 74 ALA A 83 1 10 HELIX 3 3 GLY A 143 ALA A 145 5 3 HELIX 4 4 ALA A 251 SER A 258 5 8 HELIX 5 5 ASP A 303 ALA A 307 5 5 HELIX 6 6 HIS A 308 SER A 313 1 6 HELIX 7 7 GLN A 394 PHE A 421 1 28 HELIX 8 8 PRO A 437 PHE A 452 1 16 HELIX 9 9 SER A 466 GLU A 481 1 16 HELIX 10 10 GLY A 482 ASN A 495 1 14 HELIX 11 11 LYS A 516 ARG A 531 1 16 SHEET 1 A 7 PHE A 48 PRO A 51 0 SHEET 2 A 7 GLU A 31 ALA A 38 -1 N ALA A 38 O PHE A 48 SHEET 3 A 7 GLU A 19 VAL A 28 -1 N VAL A 28 O GLU A 31 SHEET 4 A 7 PHE A 67 LEU A 73 -1 O PHE A 67 N VAL A 20 SHEET 5 A 7 ALA A 106 HIS A 111 -1 O ALA A 106 N LEU A 73 SHEET 6 A 7 TRP A 147 PRO A 152 -1 O TRP A 148 N ILE A 107 SHEET 7 A 7 LEU A 169 SER A 173 -1 O ILE A 170 N HIS A 151 SHEET 1 B 4 PHE A 48 PRO A 51 0 SHEET 2 B 4 GLU A 31 ALA A 38 -1 N ALA A 38 O PHE A 48 SHEET 3 B 4 GLU A 19 VAL A 28 -1 N VAL A 28 O GLU A 31 SHEET 4 B 4 ASN A 201 CYS A 206 -1 O ILE A 205 N GLU A 19 SHEET 1 C 4 TYR A 117 CYS A 120 0 SHEET 2 C 4 PHE A 133 GLN A 138 -1 O GLY A 136 N SER A 119 SHEET 3 C 4 GLN A 190 SER A 194 -1 O ALA A 193 N PHE A 133 SHEET 4 C 4 TYR A 179 SER A 183 -1 N HIS A 181 O ASP A 192 SHEET 1 D 4 LEU A 280 HIS A 284 0 SHEET 2 D 4 TRP A 260 PRO A 264 -1 N GLU A 263 O ARG A 281 SHEET 3 D 4 VAL A 219 PHE A 223 -1 N LEU A 220 O TRP A 260 SHEET 4 D 4 PHE A 389 ARG A 392 -1 O PHE A 389 N PHE A 223 SHEET 1 E 4 GLU A 229 ILE A 233 0 SHEET 2 E 4 VAL A 245 GLY A 249 -1 O TYR A 246 N THR A 232 SHEET 3 E 4 LYS A 373 HIS A 379 -1 O ALA A 376 N VAL A 245 SHEET 4 E 4 TRP A 356 TYR A 359 -1 N TRP A 356 O HIS A 379 SHEET 1 F 2 TYR A 290 THR A 294 0 SHEET 2 F 2 GLY A 298 VAL A 302 -1 O VAL A 302 N TYR A 290 SHEET 1 G 2 PHE A 314 ARG A 317 0 SHEET 2 G 2 PHE A 347 HIS A 350 -1 O PHE A 347 N ARG A 317 CRYST1 118.162 118.162 246.951 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008463 0.004886 0.000000 0.00000 SCALE2 0.000000 0.009772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004049 0.00000