HEADER HYDROLASE/SIGNALING PROTEIN 29-NOV-12 4I6N TITLE CRYSTAL STRUCTURE OF TRICHINELLA SPIRALIS UCH37 CATALYTIC DOMAIN BOUND TITLE 2 TO UBIQUITIN VINYL METHYL ESTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-HYDROLASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN RESIDUES 1-226; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBIQUITIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHINELLA SPIRALIS; SOURCE 3 ORGANISM_COMMON: TRICHINA WORM; SOURCE 4 ORGANISM_TAXID: 6334; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: UBC; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PTYB1 KEYWDS HELIX-BETA-HELIX SANDWICH, PROTEIN-PROTEIN COMPLEX, DEUBIQUITINATION, KEYWDS 2 UBIQUITIN C-TERMINAL HYDROLASE, CYTOSOL, HYDROLASE-SIGNALING PROTEIN KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.E.MORROW,J.A.RONAU,R.R.WHITE,K.ARTAVANIS-TSAKONAS,C.DAS REVDAT 2 15-NOV-23 4I6N 1 REMARK LINK ATOM REVDAT 1 29-MAY-13 4I6N 0 JRNL AUTH M.E.MORROW,M.I.KIM,J.A.RONAU,M.J.SHEEDLO,R.R.WHITE,J.CHANEY, JRNL AUTH 2 L.N.PAUL,M.A.LILL,K.ARTAVANIS-TSAKONAS,C.DAS JRNL TITL STABILIZATION OF AN UNUSUAL SALT BRIDGE IN UBIQUITIN BY THE JRNL TITL 2 EXTRA C-TERMINAL DOMAIN OF THE PROTEASOME-ASSOCIATED JRNL TITL 3 DEUBIQUITINASE UCH37 AS A MECHANISM OF ITS EXO SPECIFICITY. JRNL REF BIOCHEMISTRY V. 52 3564 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23617878 JRNL DOI 10.1021/BI4003106 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 62257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8832 - 4.7577 1.00 3171 167 0.1633 0.1667 REMARK 3 2 4.7577 - 3.7793 1.00 3080 171 0.1277 0.1586 REMARK 3 3 3.7793 - 3.3025 1.00 3070 150 0.1444 0.1785 REMARK 3 4 3.3025 - 3.0009 1.00 3087 146 0.1763 0.2155 REMARK 3 5 3.0009 - 2.7860 1.00 3009 170 0.1900 0.2099 REMARK 3 6 2.7860 - 2.6219 1.00 3056 169 0.1934 0.2463 REMARK 3 7 2.6219 - 2.4907 1.00 3028 167 0.1903 0.2445 REMARK 3 8 2.4907 - 2.3823 1.00 3019 172 0.1816 0.2417 REMARK 3 9 2.3823 - 2.2906 1.00 3057 158 0.1818 0.2402 REMARK 3 10 2.2906 - 2.2116 1.00 3035 148 0.1762 0.2350 REMARK 3 11 2.2116 - 2.1425 1.00 2992 177 0.1781 0.2246 REMARK 3 12 2.1425 - 2.0813 1.00 3088 151 0.1861 0.2418 REMARK 3 13 2.0813 - 2.0265 0.99 2976 163 0.1845 0.2420 REMARK 3 14 2.0265 - 1.9771 0.99 2990 178 0.1948 0.2355 REMARK 3 15 1.9771 - 1.9321 0.96 2857 162 0.2091 0.2652 REMARK 3 16 1.9321 - 1.8910 0.92 2771 157 0.2340 0.2539 REMARK 3 17 1.8910 - 1.8532 0.82 2474 112 0.2420 0.3034 REMARK 3 18 1.8532 - 1.8183 0.72 2193 128 0.2363 0.3021 REMARK 3 19 1.8183 - 1.7858 0.61 1839 87 0.2427 0.2436 REMARK 3 20 1.7858 - 1.7555 0.54 1666 66 0.2369 0.2836 REMARK 3 21 1.7555 - 1.7272 0.47 1431 75 0.2456 0.3321 REMARK 3 22 1.7272 - 1.7006 0.41 1235 59 0.2760 0.2930 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 4767 REMARK 3 ANGLE : 1.753 6451 REMARK 3 CHIRALITY : 0.122 736 REMARK 3 PLANARITY : 0.008 830 REMARK 3 DIHEDRAL : 15.647 1787 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 35.4692 51.0532 17.3875 REMARK 3 T TENSOR REMARK 3 T11: 0.2773 T22: 0.2452 REMARK 3 T33: 0.2640 T12: 0.0143 REMARK 3 T13: 0.0083 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.7776 L22: 0.0699 REMARK 3 L33: 1.7801 L12: -0.2111 REMARK 3 L13: 1.1152 L23: -0.4289 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.1582 S13: 0.0021 REMARK 3 S21: -0.0230 S22: -0.0525 S23: -0.0208 REMARK 3 S31: -0.0073 S32: 0.2330 S33: 0.0413 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62326 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 42.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL (PHENIX.AUTOSOL) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M AMMONIUM SULFATE, 0.1M BICINE, 2MM REMARK 280 L-GLUTATHIONE, PH 9.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.60100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.87950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.60100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.87950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 215 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 218 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ARG A 142 REMARK 465 GLN A 143 REMARK 465 GLN A 144 REMARK 465 LEU A 145 REMARK 465 PHE A 146 REMARK 465 GLU A 147 REMARK 465 ILE A 148 REMARK 465 ASP A 149 REMARK 465 ASP A 150 REMARK 465 GLN A 151 REMARK 465 LYS A 226 REMARK 465 GLY C -4 REMARK 465 ARG C 142 REMARK 465 GLN C 143 REMARK 465 GLN C 144 REMARK 465 LEU C 145 REMARK 465 PHE C 146 REMARK 465 GLU C 147 REMARK 465 ILE C 148 REMARK 465 ASP C 149 REMARK 465 ASP C 150 REMARK 465 GLN C 151 REMARK 465 GLN C 152 REMARK 465 GLN C 225 REMARK 465 LYS C 226 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 GLU C 3 CB CG CD OE1 OE2 REMARK 470 GLU C 63 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 126 S1 DTT A 301 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 169 -125.43 54.38 REMARK 500 ALA A 189 -165.80 77.57 REMARK 500 SER C 0 -56.85 106.37 REMARK 500 ASN C 5 68.27 62.12 REMARK 500 ASN C 169 -121.46 50.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 188 ALA A 189 144.08 REMARK 500 LEU C -2 GLY C -1 131.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 O REMARK 620 2 VAL A 102 O 98.8 REMARK 620 3 HOH A 443 O 88.0 98.1 REMARK 620 4 HOH A 463 O 95.5 79.4 176.0 REMARK 620 5 HOH A 511 O 84.0 159.4 102.4 80.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GVE B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GVE D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IHR RELATED DB: PDB REMARK 900 STRUCTURE OF FULL-LENGTH, HUMAN PROTEIN DBREF 4I6N A -4 226 PDB 4I6N 4I6N -4 226 DBREF 4I6N B 1 75 UNP P0CG48 UBC_HUMAN 1 75 DBREF 4I6N C -4 226 PDB 4I6N 4I6N -4 226 DBREF 4I6N D 1 75 UNP P0CG48 UBC_HUMAN 1 75 SEQRES 1 A 231 GLY PRO LEU GLY SER MSE ALA GLU GLY ASN TRP CYS LEU SEQRES 2 A 231 ILE GLU SER ASP PRO GLY ILE PHE THR GLU MSE ILE HIS SEQRES 3 A 231 GLY PHE GLY CYS THR GLY LEU GLN VAL GLU GLU LEU VAL SEQRES 4 A 231 VAL LEU ASP GLU SER ILE GLU HIS LEU LYS PRO ILE HIS SEQRES 5 A 231 GLY PHE ILE PHE LEU PHE ARG TRP LEU LYS LYS GLU MSE SEQRES 6 A 231 ARG LYS GLU VAL ASP ASP SER PRO GLN THR CYS THR ASP SEQRES 7 A 231 VAL TYR PHE SER GLN GLN VAL ILE GLN ASN ALA CYS ALA SEQRES 8 A 231 SER GLN ALA LEU ILE ASN LEU LEU LEU ASN CYS ASP HIS SEQRES 9 A 231 PRO ASP VAL ASP LEU GLY PRO THR LEU LYS GLU PHE LYS SEQRES 10 A 231 ASP PHE THR TYR ASP LEU ASP SER ALA SER ARG GLY LEU SEQRES 11 A 231 CYS LEU THR ASN SER GLU LYS ILE ARG ALA VAL HIS ASN SEQRES 12 A 231 SER PHE GLY ARG GLN GLN LEU PHE GLU ILE ASP ASP GLN SEQRES 13 A 231 GLN LYS LEU ASP GLU GLU ASP VAL PHE HIS PHE VAL THR SEQRES 14 A 231 TYR VAL PRO VAL ASN ASP GLY VAL TYR GLU LEU ASP GLY SEQRES 15 A 231 LEU ARG ALA ALA PRO LEU ARG LEU GLY THR VAL ALA SER SEQRES 16 A 231 ASP GLY ASP TRP THR GLU VAL ALA ILE LYS ALA ILE LYS SEQRES 17 A 231 GLU LYS ILE LYS ASN TYR GLY GLU SER GLU VAL ARG PHE SEQRES 18 A 231 ASN LEU MSE ALA VAL ILE SER ASP GLN LYS SEQRES 1 B 75 MSE GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 1 C 231 GLY PRO LEU GLY SER MSE ALA GLU GLY ASN TRP CYS LEU SEQRES 2 C 231 ILE GLU SER ASP PRO GLY ILE PHE THR GLU MSE ILE HIS SEQRES 3 C 231 GLY PHE GLY CYS THR GLY LEU GLN VAL GLU GLU LEU VAL SEQRES 4 C 231 VAL LEU ASP GLU SER ILE GLU HIS LEU LYS PRO ILE HIS SEQRES 5 C 231 GLY PHE ILE PHE LEU PHE ARG TRP LEU LYS LYS GLU MSE SEQRES 6 C 231 ARG LYS GLU VAL ASP ASP SER PRO GLN THR CYS THR ASP SEQRES 7 C 231 VAL TYR PHE SER GLN GLN VAL ILE GLN ASN ALA CYS ALA SEQRES 8 C 231 SER GLN ALA LEU ILE ASN LEU LEU LEU ASN CYS ASP HIS SEQRES 9 C 231 PRO ASP VAL ASP LEU GLY PRO THR LEU LYS GLU PHE LYS SEQRES 10 C 231 ASP PHE THR TYR ASP LEU ASP SER ALA SER ARG GLY LEU SEQRES 11 C 231 CYS LEU THR ASN SER GLU LYS ILE ARG ALA VAL HIS ASN SEQRES 12 C 231 SER PHE GLY ARG GLN GLN LEU PHE GLU ILE ASP ASP GLN SEQRES 13 C 231 GLN LYS LEU ASP GLU GLU ASP VAL PHE HIS PHE VAL THR SEQRES 14 C 231 TYR VAL PRO VAL ASN ASP GLY VAL TYR GLU LEU ASP GLY SEQRES 15 C 231 LEU ARG ALA ALA PRO LEU ARG LEU GLY THR VAL ALA SER SEQRES 16 C 231 ASP GLY ASP TRP THR GLU VAL ALA ILE LYS ALA ILE LYS SEQRES 17 C 231 GLU LYS ILE LYS ASN TYR GLY GLU SER GLU VAL ARG PHE SEQRES 18 C 231 ASN LEU MSE ALA VAL ILE SER ASP GLN LYS SEQRES 1 D 75 MSE GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY MODRES 4I6N MSE A 1 MET SELENOMETHIONINE MODRES 4I6N MSE A 19 MET SELENOMETHIONINE MODRES 4I6N MSE A 60 MET SELENOMETHIONINE MODRES 4I6N MSE A 219 MET SELENOMETHIONINE MODRES 4I6N MSE B 1 MET SELENOMETHIONINE MODRES 4I6N MSE C 1 MET SELENOMETHIONINE MODRES 4I6N MSE C 19 MET SELENOMETHIONINE MODRES 4I6N MSE C 60 MET SELENOMETHIONINE MODRES 4I6N MSE C 219 MET SELENOMETHIONINE MODRES 4I6N MSE D 1 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 19 8 HET MSE A 60 8 HET MSE A 219 8 HET MSE B 1 8 HET MSE C 1 8 HET MSE C 19 8 HET MSE C 60 8 HET MSE C 219 8 HET MSE D 1 8 HET DTT A 301 8 HET NA A 302 1 HET GVE B 101 8 HET GVE D 101 8 HETNAM MSE SELENOMETHIONINE HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM NA SODIUM ION HETNAM GVE METHYL 4-AMINOBUTANOATE HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 5 DTT C4 H10 O2 S2 FORMUL 6 NA NA 1+ FORMUL 7 GVE 2(C5 H11 N O2) FORMUL 9 HOH *346(H2 O) HELIX 1 1 PRO A -3 ALA A 2 5 6 HELIX 2 2 ASP A 12 PHE A 23 1 12 HELIX 3 3 ILE A 40 LYS A 44 5 5 HELIX 4 4 LEU A 56 LYS A 62 5 7 HELIX 5 5 SER A 67 ASP A 73 1 7 HELIX 6 6 ALA A 84 LEU A 95 1 12 HELIX 7 7 LEU A 104 TYR A 116 1 13 HELIX 8 8 ASP A 119 ASN A 129 1 11 HELIX 9 9 SER A 130 PHE A 140 1 11 HELIX 10 10 LYS A 153 GLU A 157 5 5 HELIX 11 11 ASP A 193 LYS A 207 1 15 HELIX 12 12 THR B 22 GLY B 35 1 14 HELIX 13 13 PRO B 37 ASP B 39 5 3 HELIX 14 14 LEU B 56 ASN B 60 5 5 HELIX 15 15 ASP C 12 PHE C 23 1 12 HELIX 16 16 ILE C 40 LYS C 44 5 5 HELIX 17 17 LEU C 56 LYS C 62 5 7 HELIX 18 18 SER C 67 VAL C 74 1 8 HELIX 19 19 ALA C 84 LEU C 95 1 12 HELIX 20 20 LEU C 104 TYR C 116 1 13 HELIX 21 21 ASP C 119 ASN C 129 1 11 HELIX 22 22 SER C 130 SER C 139 1 10 HELIX 23 23 PHE C 140 GLY C 141 5 2 HELIX 24 24 LYS C 153 GLU C 157 5 5 HELIX 25 25 TRP C 194 ASN C 208 1 15 HELIX 26 26 THR D 22 GLY D 35 1 14 HELIX 27 27 PRO D 37 ASP D 39 5 3 HELIX 28 28 LEU D 56 ASN D 60 5 5 SHEET 1 A 2 ILE A 9 GLU A 10 0 SHEET 2 A 2 ARG B 74 GLY B 75 -1 O GLY B 75 N ILE A 9 SHEET 1 B 6 LEU A 28 LEU A 33 0 SHEET 2 B 6 ASN A 217 SER A 223 -1 O ALA A 220 N GLU A 31 SHEET 3 B 6 ILE A 46 ARG A 54 -1 N GLY A 48 O VAL A 221 SHEET 4 B 6 PHE A 160 VAL A 168 -1 O HIS A 161 N PHE A 53 SHEET 5 B 6 GLY A 171 LEU A 175 -1 O LEU A 175 N THR A 164 SHEET 6 B 6 LEU A 183 THR A 187 -1 O LEU A 185 N VAL A 172 SHEET 1 C 5 THR B 12 GLU B 16 0 SHEET 2 C 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 C 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 C 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 C 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 D 2 ILE C 9 GLU C 10 0 SHEET 2 D 2 ARG D 74 GLY D 75 -1 O GLY D 75 N ILE C 9 SHEET 1 E 6 LEU C 28 LEU C 33 0 SHEET 2 E 6 PHE C 216 SER C 223 -1 O ALA C 220 N GLU C 31 SHEET 3 E 6 ILE C 46 ARG C 54 -1 N HIS C 47 O VAL C 221 SHEET 4 E 6 PHE C 160 VAL C 168 -1 O VAL C 163 N PHE C 51 SHEET 5 E 6 GLY C 171 LEU C 175 -1 O LEU C 175 N THR C 164 SHEET 6 E 6 LEU C 183 THR C 187 -1 O LEU C 183 N GLU C 174 SHEET 1 F 5 THR D 12 GLU D 16 0 SHEET 2 F 5 GLN D 2 THR D 7 -1 N VAL D 5 O ILE D 13 SHEET 3 F 5 THR D 66 LEU D 71 1 O LEU D 69 N LYS D 6 SHEET 4 F 5 GLN D 41 PHE D 45 -1 N ARG D 42 O VAL D 70 SHEET 5 F 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 SSBOND 1 CYS A 71 CYS C 71 1555 1555 2.06 LINK C SER A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ALA A 2 1555 1555 1.32 LINK C GLU A 18 N MSE A 19 1555 1555 1.34 LINK C MSE A 19 N ILE A 20 1555 1555 1.33 LINK C GLU A 59 N MSE A 60 1555 1555 1.35 LINK C MSE A 60 N ARG A 61 1555 1555 1.33 LINK SG CYS A 85 CB GVE B 101 1555 1555 1.83 LINK C LEU A 218 N MSE A 219 1555 1555 1.33 LINK C MSE A 219 N ALA A 220 1555 1555 1.34 LINK C MSE B 1 N GLN B 2 1555 1555 1.33 LINK C GLY B 75 N GVE B 101 1555 1555 1.35 LINK C SER C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N ALA C 2 1555 1555 1.32 LINK C GLU C 18 N MSE C 19 1555 1555 1.33 LINK C MSE C 19 N ILE C 20 1555 1555 1.33 LINK C GLU C 59 N MSE C 60 1555 1555 1.32 LINK C MSE C 60 N ARG C 61 1555 1555 1.33 LINK SG CYS C 85 CB GVE D 101 1555 1555 1.84 LINK C LEU C 218 N MSE C 219 1555 1555 1.34 LINK C MSE C 219 N ALA C 220 1555 1555 1.33 LINK C MSE D 1 N GLN D 2 1555 1555 1.33 LINK C GLY D 75 N GVE D 101 1555 1555 1.33 LINK O HIS A 99 NA NA A 302 1555 1555 2.37 LINK O VAL A 102 NA NA A 302 1555 1555 2.22 LINK NA NA A 302 O HOH A 443 1555 1555 2.31 LINK NA NA A 302 O HOH A 463 1555 1555 2.41 LINK NA NA A 302 O HOH A 511 1555 1555 2.34 CISPEP 1 LYS A 44 PRO A 45 0 8.22 CISPEP 2 ALA A 189 SER A 190 0 19.49 CISPEP 3 GLY C -1 SER C 0 0 23.63 CISPEP 4 LYS C 44 PRO C 45 0 -0.83 SITE 1 AC1 4 PHE A 114 LEU A 125 CYS A 126 ASN A 129 SITE 1 AC2 5 HIS A 99 VAL A 102 HOH A 443 HOH A 463 SITE 2 AC2 5 HOH A 511 SITE 1 AC3 10 LEU A 8 GLN A 79 GLN A 82 CYS A 85 SITE 2 AC3 10 LEU A 154 VAL A 159 PHE A 160 HIS A 161 SITE 3 AC3 10 LEU A 178 GLY B 75 SITE 1 AC4 9 LEU C 8 GLN C 79 GLN C 82 CYS C 85 SITE 2 AC4 9 VAL C 159 PHE C 160 HIS C 161 LEU C 178 SITE 3 AC4 9 GLY D 75 CRYST1 171.202 55.759 73.868 90.00 113.42 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005841 0.000000 0.002529 0.00000 SCALE2 0.000000 0.017934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014753 0.00000