HEADER TRANSCRIPTION 30-NOV-12 4I6R TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE WILD-TYPE RESTRICTION- TITLE 2 MODIFICATION CONTROLLER PROTEIN C.ESP1396I (TRICLINIC FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER SP.; SOURCE 3 ORGANISM_TAXID: 211595; SOURCE 4 STRAIN: RFL1396; SOURCE 5 GENE: ESP1396IC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS RESTRICTION-MODIFICATION, HELIX-TURN-HELIX, TRANSCRIPTIONAL KEYWDS 2 REGULATOR, DNA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.N.A.MARTIN,J.E.MCGEEHAN,G.G.KNEALE REVDAT 3 20-SEP-23 4I6R 1 REMARK SEQADV REVDAT 2 18-JUN-14 4I6R 1 JRNL REVDAT 1 13-NOV-13 4I6R 0 JRNL AUTH R.N.MARTIN,J.E.MCGEEHAN,G.KNEALE JRNL TITL STRUCTURAL AND MUTAGENIC ANALYSIS OF THE RM CONTROLLER JRNL TITL 2 PROTEIN C.ESP1396I. JRNL REF PLOS ONE V. 9 98365 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24887147 JRNL DOI 10.1371/JOURNAL.PONE.0098365 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.BALL,S.D.STREETER,G.G.KNEALE,J.E.MCGEEHAN REMARK 1 TITL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN REMARK 1 TITL 2 C.ESP1396I. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 65 900 2009 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19690367 REMARK 1 DOI 10.1107/S0907444909020514 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.E.MCGEEHAN,N.J.BALL,S.D.STREETER,S.J.THRESH,G.G.KNEALE REMARK 1 TITL RECOGNITION OF DUAL SYMMETRY BY THE CONTROLLER PROTEIN REMARK 1 TITL 2 C.ESP1396I BASED ON THE STRUCTURE OF THE TRANSCRIPTIONAL REMARK 1 TITL 3 ACTIVATION COMPLEX. REMARK 1 REF NUCLEIC ACIDS RES. V. 40 4158 2012 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 22210861 REMARK 1 DOI 10.1093/NAR/GKR1250 REMARK 1 REFERENCE 3 REMARK 1 AUTH N.J.BALL,J.E.MCGEEHAN,S.D.STREETER,S.J.THRESH,G.G.KNEALE REMARK 1 TITL THE STRUCTURAL BASIS OF DIFFERENTIAL DNA SEQUENCE REMARK 1 TITL 2 RECOGNITION BY RESTRICTION-MODIFICATION CONTROLLER PROTEINS. REMARK 1 REF NUCLEIC ACIDS RES. V. 40 10532 2012 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 22941636 REMARK 1 DOI 10.1093/NAR/GKS718 REMARK 1 REFERENCE 4 REMARK 1 AUTH N.BALL,S.D.STREETER,G.G.KNEALE,J.E.MCGEEHAN REMARK 1 TITL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN REMARK 1 TITL 2 C.ESP1396I. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 65 900 2009 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19690367 REMARK 1 DOI 10.1107/S0907444909020514 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.5 REMARK 3 NUMBER OF REFLECTIONS : 29524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1470 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2049 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : -0.02000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.659 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1359 ; 0.030 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1400 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1821 ; 2.696 ; 2.029 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3250 ; 1.106 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 172 ; 5.032 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;20.565 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 300 ;13.517 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.762 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 220 ; 0.177 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1426 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 274 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 79 REMARK 3 RESIDUE RANGE : A 101 A 104 REMARK 3 RESIDUE RANGE : A 201 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7060 -6.7860 -21.3690 REMARK 3 T TENSOR REMARK 3 T11: 0.1032 T22: 0.0485 REMARK 3 T33: 0.0314 T12: -0.0513 REMARK 3 T13: -0.0316 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 0.0837 L22: 1.1448 REMARK 3 L33: 0.8208 L12: -0.2042 REMARK 3 L13: -0.0756 L23: 0.5702 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: -0.0255 S13: -0.0307 REMARK 3 S21: 0.0618 S22: 0.0245 S23: 0.0389 REMARK 3 S31: 0.0093 S32: 0.0378 S33: 0.0007 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 79 REMARK 3 RESIDUE RANGE : B 101 B 104 REMARK 3 RESIDUE RANGE : B 201 B 238 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1880 -15.6720 -36.8770 REMARK 3 T TENSOR REMARK 3 T11: 0.0989 T22: 0.0591 REMARK 3 T33: 0.0246 T12: -0.0509 REMARK 3 T13: -0.0363 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 1.5052 L22: 0.1440 REMARK 3 L33: 0.6833 L12: 0.0240 REMARK 3 L13: 0.6827 L23: 0.1986 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: 0.0598 S13: 0.0419 REMARK 3 S21: -0.0242 S22: -0.0197 S23: -0.0136 REMARK 3 S31: 0.0332 S32: 0.0083 S33: -0.0037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31070 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 37.049 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: PDB ENTRY 3G5G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MMT BUFFER, 100 MM SODIUM REMARK 280 SULPHATE, 25% PEG 1500, PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -14.89248 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 18.68653 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 37.04911 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 19.86752 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 18.68653 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 37.04911 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 GOL A 104 O HOH A 219 2.02 REMARK 500 N SER A 3 O HOH A 236 2.03 REMARK 500 CG MET A 57 O HOH A 214 2.12 REMARK 500 OE1 GLU A 54 O1 GOL B 103 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 4 CG PHE A 4 CD2 0.093 REMARK 500 GLU A 25 CD GLU A 25 OE2 0.081 REMARK 500 SER A 45 CB SER A 45 OG 0.079 REMARK 500 SER B 7 CB SER B 7 OG -0.091 REMARK 500 TYR B 29 CE1 TYR B 29 CZ -0.085 REMARK 500 GLU B 69 CD GLU B 69 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLU A 25 OE1 - CD - OE2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 64 CB - CG - OD1 ANGL. DEV. = 9.9 DEGREES REMARK 500 PHE A 67 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 LEU B 6 CB - CG - CD1 ANGL. DEV. = 11.0 DEGREES REMARK 500 LEU B 6 CB - CG - CD2 ANGL. DEV. = -13.4 DEGREES REMARK 500 LYS B 20 CD - CE - NZ ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG B 46 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 44 118.67 -160.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A 44 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FN3 RELATED DB: PDB REMARK 900 S52A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4FBI RELATED DB: PDB REMARK 900 R46A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4F8D RELATED DB: PDB REMARK 900 R46A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 3G5G RELATED DB: PDB REMARK 900 NATIVE FREE PROTEIN REMARK 900 RELATED ID: 3FYA RELATED DB: PDB REMARK 900 R35A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 3CLC RELATED DB: PDB REMARK 900 DNA BOUND TETRAMER REMARK 900 RELATED ID: 3S8Q RELATED DB: PDB REMARK 900 DNA BOUND DIMER (OL) REMARK 900 RELATED ID: 3UFD RELATED DB: PDB REMARK 900 DNA BOUND DIMER (OM) REMARK 900 RELATED ID: 4I6T RELATED DB: PDB REMARK 900 RELATED ID: 4I6U RELATED DB: PDB DBREF 4I6R A 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4I6R B 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 SEQADV 4I6R GLY A -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6R SER A -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6R HIS A 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6R GLY B -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6R SER B -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6R HIS B 0 UNP Q8GGH0 EXPRESSION TAG SEQRES 1 A 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 A 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 A 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 A 82 TYR ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 A 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 A 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 A 82 LEU LYS HIS ASP SEQRES 1 B 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 B 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 B 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 B 82 TYR ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 B 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 B 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 B 82 LEU LYS HIS ASP HET SO4 A 101 5 HET GOL A 102 6 HET GOL A 103 6 HET GOL A 104 6 HET SO4 B 101 5 HET SO4 B 102 5 HET GOL B 103 6 HET GOL B 104 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 11 HOH *78(H2 O) HELIX 1 1 SER A 3 LYS A 20 1 18 HELIX 2 2 THR A 23 ASN A 32 1 10 HELIX 3 3 ASP A 34 ASN A 44 1 11 HELIX 4 4 THR A 49 GLU A 61 1 13 HELIX 5 5 SER A 63 ASP A 79 1 17 HELIX 6 6 PHE B 4 LYS B 20 1 17 HELIX 7 7 THR B 23 ASN B 32 1 10 HELIX 8 8 ASP B 34 ASN B 44 1 11 HELIX 9 9 THR B 49 GLU B 61 1 13 HELIX 10 10 SER B 63 ASP B 79 1 17 SITE 1 AC1 9 ARG A 35 THR A 36 SER A 39 ARG A 43 SITE 2 AC1 9 HOH A 203 HOH A 205 HIS B 78 GOL B 104 SITE 3 AC1 9 HOH B 211 SITE 1 AC2 6 SER A 3 PHE A 4 LEU A 5 ASP A 79 SITE 2 AC2 6 GLU B 54 HOH B 208 SITE 1 AC3 4 LYS A 15 LEU A 18 GLU A 19 LEU B 18 SITE 1 AC4 7 LYS A 14 GLN A 24 SER A 39 GLU A 42 SITE 2 AC4 7 ARG A 43 HOH A 204 HOH A 219 SITE 1 AC5 10 ARG A 17 THR A 23 GLN A 24 HOH A 204 SITE 2 AC5 10 THR B 23 GLN B 24 GLU B 25 ARG B 35 SITE 3 AC5 10 HOH B 201 HOH B 202 SITE 1 AC6 4 ARG A 43 GLU B 25 LYS B 77 HIS B 78 SITE 1 AC7 6 GLU A 54 HOH A 209 SER B 3 PHE B 4 SITE 2 AC7 6 LEU B 5 ASP B 79 SITE 1 AC8 5 ARG A 43 SO4 A 101 LYS B 8 GLU B 74 SITE 2 AC8 5 HIS B 78 CRYST1 34.760 34.780 41.860 110.47 105.60 96.00 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028769 0.003024 0.010039 0.00000 SCALE2 0.000000 0.028911 0.012410 0.00000 SCALE3 0.000000 0.000000 0.026991 0.00000