HEADER TRANSCRIPTION 30-NOV-12 4I6U TITLE CRYSTAL STRUCTURE OF A Y37F MUTANT OF THE RESTRICTION-MODIFICATION TITLE 2 CONTROLLER PROTEIN C.ESP1396I COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER SP.; SOURCE 3 ORGANISM_TAXID: 211595; SOURCE 4 STRAIN: RFL1396; SOURCE 5 GENE: ESP1396IC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS RESTRICTION-MODIFICATION, HELIX-TURN-HELIX, TRANSCRIPTIONAL REGULATO, KEYWDS 2 DNA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.N.A.MARTIN,J.E.MCGEEHAN,G.G.KNEALE REVDAT 3 28-FEB-24 4I6U 1 REMARK SEQADV LINK REVDAT 2 18-JUN-14 4I6U 1 JRNL REVDAT 1 13-NOV-13 4I6U 0 JRNL AUTH R.N.MARTIN,J.E.MCGEEHAN,G.KNEALE JRNL TITL STRUCTURAL AND MUTAGENIC ANALYSIS OF THE RM CONTROLLER JRNL TITL 2 PROTEIN C.ESP1396I. JRNL REF PLOS ONE V. 9 98365 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24887147 JRNL DOI 10.1371/JOURNAL.PONE.0098365 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.BALL,S.D.STREETER,G.G.KNEALE,J.E.MCGEEHAN REMARK 1 TITL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN REMARK 1 TITL 2 C.ESP1396I. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 65 900 2009 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19690367 REMARK 1 DOI 10.1107/S0907444909020514 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.E.MCGEEHAN,N.J.BALL,S.D.STREETER,S.J.THRESH,G.G.KNEALE REMARK 1 TITL RECOGNITION OF DUAL SYMMETRY BY THE CONTROLLER PROTEIN REMARK 1 TITL 2 C.ESP1396I BASED ON THE STRUCTURE OF THE TRANSCRIPTIONAL REMARK 1 TITL 3 ACTIVATION COMPLEX. REMARK 1 REF NUCLEIC ACIDS RES. V. 40 4158 2012 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 22210861 REMARK 1 DOI 10.1093/NAR/GKR1250 REMARK 1 REFERENCE 3 REMARK 1 AUTH N.J.BALL,J.E.MCGEEHAN,S.D.STREETER,S.J.THRESH,G.G.KNEALE REMARK 1 TITL THE STRUCTURAL BASIS OF DIFFERENTIAL DNA SEQUENCE REMARK 1 TITL 2 RECOGNITION BY RESTRICTION-MODIFICATION CONTROLLER PROTEINS. REMARK 1 REF NUCLEIC ACIDS RES. V. 40 10532 2012 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 22941636 REMARK 1 DOI 10.1093/NAR/GKS718 REMARK 1 REFERENCE 4 REMARK 1 AUTH N.BALL,S.D.STREETER,G.G.KNEALE,J.E.MCGEEHAN REMARK 1 TITL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN REMARK 1 TITL 2 C.ESP1396I. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 65 900 2009 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19690367 REMARK 1 DOI 10.1107/S0907444909020514 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 38823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1951 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.063 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3871 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4053 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5157 ; 1.864 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9369 ; 0.958 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 5.079 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;32.408 ;24.295 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 865 ;15.936 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.267 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 616 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4096 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 802 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4I6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076377. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38881 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 45.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM SULPHATE, 0.2 M SODIUM REMARK 280 ACETATE, 0.1 M BIS TRIS PROPANE, 20 % W/V PEG 3350, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.30500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.54000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.54000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.30500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 HIS C 78 REMARK 465 ASP C 79 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 ASP D 79 REMARK 465 GLY E -2 REMARK 465 SER E -1 REMARK 465 HIS E 0 REMARK 465 MET E 1 REMARK 465 GLU E 2 REMARK 465 GLY F -2 REMARK 465 SER F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 GLU F 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 102 O HOH E 117 1.82 REMARK 500 NZ LYS E 77 O HOH E 109 2.06 REMARK 500 O HOH B 130 O HOH B 131 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 5 CB - CG - CD2 ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG B 43 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP D 64 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 LEU E 5 CB - CG - CD2 ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS F 78 112.74 178.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 10 OG REMARK 620 2 ILE A 41 O 58.9 REMARK 620 3 ARG A 46 O 121.4 127.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL F 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FN3 RELATED DB: PDB REMARK 900 S52A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4FBI RELATED DB: PDB REMARK 900 R46A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 4F8D RELATED DB: PDB REMARK 900 R46A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 3G5G RELATED DB: PDB REMARK 900 NATIVE FREE PROTEIN REMARK 900 RELATED ID: 3FYA RELATED DB: PDB REMARK 900 R35A MUTANT FREE PROTEIN REMARK 900 RELATED ID: 3CLC RELATED DB: PDB REMARK 900 DNA BOUND TETRAMER REMARK 900 RELATED ID: 3S8Q RELATED DB: PDB REMARK 900 DNA BOUND DIMER (OL) REMARK 900 RELATED ID: 3UFD RELATED DB: PDB REMARK 900 DNA BOUND DIMER (OM) REMARK 900 RELATED ID: 4I6R RELATED DB: PDB REMARK 900 NATIVE FREE PROTEIN (TRICLINIC FORM) REMARK 900 RELATED ID: 4I6T RELATED DB: PDB REMARK 900 T36A MUTANT FREE PROTEIN DBREF 4I6U A 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4I6U B 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4I6U C 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4I6U D 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4I6U E 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 DBREF 4I6U F 1 79 UNP Q8GGH0 Q8GGH0_9ENTR 1 79 SEQADV 4I6U GLY A -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U SER A -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U HIS A 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U PHE A 37 UNP Q8GGH0 TYR 37 ENGINEERED MUTATION SEQADV 4I6U GLY B -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U SER B -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U HIS B 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U PHE B 37 UNP Q8GGH0 TYR 37 ENGINEERED MUTATION SEQADV 4I6U GLY C -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U SER C -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U HIS C 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U PHE C 37 UNP Q8GGH0 TYR 37 ENGINEERED MUTATION SEQADV 4I6U GLY D -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U SER D -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U HIS D 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U PHE D 37 UNP Q8GGH0 TYR 37 ENGINEERED MUTATION SEQADV 4I6U GLY E -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U SER E -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U HIS E 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U PHE E 37 UNP Q8GGH0 TYR 37 ENGINEERED MUTATION SEQADV 4I6U GLY F -2 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U SER F -1 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U HIS F 0 UNP Q8GGH0 EXPRESSION TAG SEQADV 4I6U PHE F 37 UNP Q8GGH0 TYR 37 ENGINEERED MUTATION SEQRES 1 A 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 A 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 A 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 A 82 PHE ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 A 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 A 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 A 82 LEU LYS HIS ASP SEQRES 1 B 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 B 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 B 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 B 82 PHE ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 B 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 B 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 B 82 LEU LYS HIS ASP SEQRES 1 C 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 C 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 C 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 C 82 PHE ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 C 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 C 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 C 82 LEU LYS HIS ASP SEQRES 1 D 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 D 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 D 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 D 82 PHE ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 D 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 D 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 D 82 LEU LYS HIS ASP SEQRES 1 E 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 E 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 E 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 E 82 PHE ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 E 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 E 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 E 82 LEU LYS HIS ASP SEQRES 1 F 82 GLY SER HIS MET GLU SER PHE LEU LEU SER LYS VAL SER SEQRES 2 F 82 PHE VAL ILE LYS LYS ILE ARG LEU GLU LYS GLY MET THR SEQRES 3 F 82 GLN GLU ASP LEU ALA TYR LYS SER ASN LEU ASP ARG THR SEQRES 4 F 82 PHE ILE SER GLY ILE GLU ARG ASN SER ARG ASN LEU THR SEQRES 5 F 82 ILE LYS SER LEU GLU LEU ILE MET LYS GLY LEU GLU VAL SEQRES 6 F 82 SER ASP VAL VAL PHE PHE GLU MET LEU ILE LYS GLU ILE SEQRES 7 F 82 LEU LYS HIS ASP HET NA A 101 1 HET ACT A 102 4 HET PEG A 103 7 HET PEG A 104 7 HET GOL A 105 6 HET ACT C 101 4 HET ACT D 101 4 HET GOL F 101 6 HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 NA NA 1+ FORMUL 8 ACT 3(C2 H3 O2 1-) FORMUL 9 PEG 2(C4 H10 O3) FORMUL 11 GOL 2(C3 H8 O3) FORMUL 15 HOH *147(H2 O) HELIX 1 1 SER A 3 LYS A 20 1 18 HELIX 2 2 THR A 23 ASN A 32 1 10 HELIX 3 3 ASP A 34 ARG A 43 1 10 HELIX 4 4 THR A 49 GLU A 61 1 13 HELIX 5 5 SER A 63 HIS A 78 1 16 HELIX 6 6 PHE B 4 LYS B 20 1 17 HELIX 7 7 THR B 23 ASN B 32 1 10 HELIX 8 8 ASP B 34 ARG B 43 1 10 HELIX 9 9 THR B 49 GLU B 61 1 13 HELIX 10 10 SER B 63 HIS B 78 1 16 HELIX 11 11 PHE C 4 LYS C 20 1 17 HELIX 12 12 THR C 23 ASN C 32 1 10 HELIX 13 13 ASP C 34 SER C 45 1 12 HELIX 14 14 THR C 49 GLU C 61 1 13 HELIX 15 15 SER C 63 LYS C 77 1 15 HELIX 16 16 PHE D 4 LYS D 20 1 17 HELIX 17 17 THR D 23 ASN D 32 1 10 HELIX 18 18 ASP D 34 ARG D 43 1 10 HELIX 19 19 THR D 49 GLU D 61 1 13 HELIX 20 20 SER D 63 LYS D 77 1 15 HELIX 21 21 PHE E 4 LYS E 20 1 17 HELIX 22 22 THR E 23 ASN E 32 1 10 HELIX 23 23 ASP E 34 ARG E 43 1 10 HELIX 24 24 THR E 49 GLU E 61 1 13 HELIX 25 25 SER E 63 LEU E 76 1 14 HELIX 26 26 PHE F 4 LYS F 20 1 17 HELIX 27 27 THR F 23 ASN F 32 1 10 HELIX 28 28 ASP F 34 ARG F 43 1 10 HELIX 29 29 THR F 49 GLU F 61 1 13 HELIX 30 30 SER F 63 LEU F 76 1 14 LINK OG SER A 10 NA NA A 101 1555 1555 3.09 LINK O ILE A 41 NA NA A 101 1555 1555 2.79 LINK O ARG A 46 NA NA A 101 1555 1555 2.61 SITE 1 AC1 5 SER A 10 ILE A 41 ASN A 44 SER A 45 SITE 2 AC1 5 ARG A 46 SITE 1 AC2 3 SER A 63 GOL A 105 LEU D 76 SITE 1 AC3 8 SER A 45 ARG A 46 ASN A 47 HOH A 218 SITE 2 AC3 8 HOH A 226 PHE B 4 HIS B 78 LYS D 51 SITE 1 AC4 5 ILE A 75 HIS A 78 ASP A 79 ASN C 44 SITE 2 AC4 5 HOH D 209 SITE 1 AC5 4 SER A 63 VAL A 66 ACT A 102 HOH A 225 SITE 1 AC6 5 SER C 39 GLY C 40 ARG C 43 ASN C 44 SITE 2 AC6 5 HOH D 215 SITE 1 AC7 4 LEU B 76 ASP B 79 LYS D 51 SER D 52 SITE 1 AC8 4 ASP A 26 TYR A 29 ASP F 26 LYS F 30 CRYST1 48.610 81.850 135.080 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020572 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007403 0.00000