HEADER TRANSCRIPTION REGULATOR 30-NOV-12 4I76 TITLE CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR TM1030 WITH OCTANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: TM1030, TM_1030; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, PFAM TETR_N, HELIX-TURN-HELIX, TRANSCRIPTIONAL KEYWDS 3 REGULATOR, DNA BINDING, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR K.D.KOCLEGA,M.CHRUSZCZ,D.R.COOPER,J.J.PETKOWSKI,K.L.TKACZUK, AUTHOR 2 A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 06-DEC-23 4I76 1 REMARK REVDAT 4 20-SEP-23 4I76 1 REMARK REVDAT 3 13-APR-22 4I76 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 15-NOV-17 4I76 1 REMARK REVDAT 1 02-JAN-13 4I76 0 JRNL AUTH K.D.KOCLEGA,M.CHRUSZCZ,D.R.COOPER,J.J.PETKOWSKI,K.L.TKACZUK, JRNL AUTH 2 A.JOACHIMIAK,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR TM1030 WITH JRNL TITL 2 OCTANOL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 23318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1200 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1196 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.033 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3455 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3373 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4631 ; 1.637 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7776 ; 1.172 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 5.536 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;32.710 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;16.718 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.946 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3803 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 794 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 199 B 3 199 11437 0.160 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4I76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23321 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ID6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%W/V PEG 2K MME, 0.1M KSCN, 6%V/V REMARK 280 OCTANOL, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.95550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.21450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.95550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.21450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EACH MONOMER IN THE ASU IS ONE HALF OF TWO DISTINCT DIMERS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 66.29008 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.31962 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 LEU A 2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 74 CD NE CZ NH1 NH2 REMARK 470 LYS A 88 NZ REMARK 470 LYS A 115 CD CE NZ REMARK 470 GLN A 125 CD OE1 NE2 REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 18 CD CE NZ REMARK 470 LYS B 88 CE NZ REMARK 470 LYS B 89 NZ REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 ARG B 126 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 162 CB CG CD OE1 OE2 REMARK 470 LYS B 172 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 27 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 101 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 MSE A 180 CA - CB - CG ANGL. DEV. = -10.4 DEGREES REMARK 500 ASP B 77 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 144 -6.37 72.13 REMARK 500 SER B 3 149.36 -35.45 REMARK 500 ARG B 74 -38.47 -37.99 REMARK 500 ASP B 144 -5.70 70.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OC9 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OC9 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ID6 RELATED DB: PDB REMARK 900 RELATED ID: 2IEK RELATED DB: PDB REMARK 900 RELATED ID: 4I6Z RELATED DB: PDB REMARK 900 RELATED ID: MCSG-APC106687 RELATED DB: TARGETTRACK DBREF 4I76 A 1 200 UNP Q9X0C0 Q9X0C0_THEMA 1 200 DBREF 4I76 B 1 200 UNP Q9X0C0 Q9X0C0_THEMA 1 200 SEQADV 4I76 GLY A -1 UNP Q9X0C0 EXPRESSION TAG SEQADV 4I76 HIS A 0 UNP Q9X0C0 EXPRESSION TAG SEQADV 4I76 GLY B -1 UNP Q9X0C0 EXPRESSION TAG SEQADV 4I76 HIS B 0 UNP Q9X0C0 EXPRESSION TAG SEQRES 1 A 202 GLY HIS MSE LEU SER LYS ARG ASP ALA ILE LEU LYS ALA SEQRES 2 A 202 ALA VAL GLU VAL PHE GLY LYS LYS GLY TYR ASP ARG ALA SEQRES 3 A 202 THR THR ASP GLU ILE ALA GLU LYS ALA GLY VAL ALA LYS SEQRES 4 A 202 GLY LEU ILE PHE HIS TYR PHE LYS ASN LYS GLU GLU LEU SEQRES 5 A 202 TYR TYR GLN ALA TYR MSE SER VAL THR GLU LYS LEU GLN SEQRES 6 A 202 LYS GLU PHE GLU ASN PHE LEU MSE LYS ASN ARG ASN ARG SEQRES 7 A 202 ASP ILE PHE ASP PHE MSE GLU ARG TRP ILE GLU LYS LYS SEQRES 8 A 202 LEU GLU TYR SER ALA SER HIS PRO GLU GLU ALA ASP PHE SEQRES 9 A 202 LEU ILE THR LEU VAL SER VAL ASP GLU GLY LEU ARG LYS SEQRES 10 A 202 ARG ILE LEU LEU ASP LEU GLU LYS SER GLN ARG VAL PHE SEQRES 11 A 202 PHE ASP PHE VAL ARG GLU LYS LEU LYS ASP LEU ASP LEU SEQRES 12 A 202 ALA GLU ASP VAL THR GLU GLU ILE ALA LEU LYS PHE LEU SEQRES 13 A 202 MSE TRP PHE PHE SER GLY PHE GLU GLU VAL TYR LEU ARG SEQRES 14 A 202 THR TYR GLN GLY LYS PRO GLU LEU LEU LYS ARG ASP MSE SEQRES 15 A 202 ASN THR LEU VAL GLU GLU VAL LYS VAL MSE LEU ARG ILE SEQRES 16 A 202 LEU LYS LYS GLY MSE THR LYS SEQRES 1 B 202 GLY HIS MSE LEU SER LYS ARG ASP ALA ILE LEU LYS ALA SEQRES 2 B 202 ALA VAL GLU VAL PHE GLY LYS LYS GLY TYR ASP ARG ALA SEQRES 3 B 202 THR THR ASP GLU ILE ALA GLU LYS ALA GLY VAL ALA LYS SEQRES 4 B 202 GLY LEU ILE PHE HIS TYR PHE LYS ASN LYS GLU GLU LEU SEQRES 5 B 202 TYR TYR GLN ALA TYR MSE SER VAL THR GLU LYS LEU GLN SEQRES 6 B 202 LYS GLU PHE GLU ASN PHE LEU MSE LYS ASN ARG ASN ARG SEQRES 7 B 202 ASP ILE PHE ASP PHE MSE GLU ARG TRP ILE GLU LYS LYS SEQRES 8 B 202 LEU GLU TYR SER ALA SER HIS PRO GLU GLU ALA ASP PHE SEQRES 9 B 202 LEU ILE THR LEU VAL SER VAL ASP GLU GLY LEU ARG LYS SEQRES 10 B 202 ARG ILE LEU LEU ASP LEU GLU LYS SER GLN ARG VAL PHE SEQRES 11 B 202 PHE ASP PHE VAL ARG GLU LYS LEU LYS ASP LEU ASP LEU SEQRES 12 B 202 ALA GLU ASP VAL THR GLU GLU ILE ALA LEU LYS PHE LEU SEQRES 13 B 202 MSE TRP PHE PHE SER GLY PHE GLU GLU VAL TYR LEU ARG SEQRES 14 B 202 THR TYR GLN GLY LYS PRO GLU LEU LEU LYS ARG ASP MSE SEQRES 15 B 202 ASN THR LEU VAL GLU GLU VAL LYS VAL MSE LEU ARG ILE SEQRES 16 B 202 LEU LYS LYS GLY MSE THR LYS MODRES 4I76 MSE A 56 MET SELENOMETHIONINE MODRES 4I76 MSE A 71 MET SELENOMETHIONINE MODRES 4I76 MSE A 82 MET SELENOMETHIONINE MODRES 4I76 MSE A 155 MET SELENOMETHIONINE MODRES 4I76 MSE A 180 MET SELENOMETHIONINE MODRES 4I76 MSE A 190 MET SELENOMETHIONINE MODRES 4I76 MSE A 198 MET SELENOMETHIONINE MODRES 4I76 MSE B 1 MET SELENOMETHIONINE MODRES 4I76 MSE B 56 MET SELENOMETHIONINE MODRES 4I76 MSE B 71 MET SELENOMETHIONINE MODRES 4I76 MSE B 82 MET SELENOMETHIONINE MODRES 4I76 MSE B 155 MET SELENOMETHIONINE MODRES 4I76 MSE B 180 MET SELENOMETHIONINE MODRES 4I76 MSE B 190 MET SELENOMETHIONINE MODRES 4I76 MSE B 198 MET SELENOMETHIONINE HET MSE A 56 8 HET MSE A 71 8 HET MSE A 82 8 HET MSE A 155 8 HET MSE A 180 8 HET MSE A 190 8 HET MSE A 198 8 HET MSE B 1 8 HET MSE B 56 8 HET MSE B 71 16 HET MSE B 82 8 HET MSE B 155 8 HET MSE B 180 8 HET MSE B 190 8 HET MSE B 198 8 HET OC9 A 301 9 HET OC9 A 302 9 HET EDO A 303 4 HET EDO A 304 4 HET EDO B 301 4 HETNAM MSE SELENOMETHIONINE HETNAM OC9 OCTAN-1-OL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 3 OC9 2(C8 H18 O) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *206(H2 O) HELIX 1 1 SER A 3 GLY A 20 1 18 HELIX 2 2 THR A 25 GLY A 34 1 10 HELIX 3 3 GLY A 38 PHE A 44 1 7 HELIX 4 4 ASN A 46 ARG A 74 1 29 HELIX 5 5 ASP A 77 HIS A 96 1 20 HELIX 6 6 HIS A 96 THR A 105 1 10 HELIX 7 7 LEU A 106 VAL A 109 5 4 HELIX 8 8 ASP A 110 ASP A 138 1 29 HELIX 9 9 THR A 146 TYR A 169 1 24 HELIX 10 10 LYS A 172 THR A 199 1 28 HELIX 11 11 SER B 3 ALA B 24 1 22 HELIX 12 12 THR B 25 GLY B 34 1 10 HELIX 13 13 LEU B 39 PHE B 44 1 6 HELIX 14 14 ASN B 46 ARG B 74 1 29 HELIX 15 15 ASP B 77 HIS B 96 1 20 HELIX 16 16 HIS B 96 THR B 105 1 10 HELIX 17 17 LEU B 106 VAL B 109 5 4 HELIX 18 18 ASP B 110 ASP B 138 1 29 HELIX 19 19 THR B 146 TYR B 169 1 24 HELIX 20 20 LYS B 172 THR B 199 1 28 LINK C TYR A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N SER A 57 1555 1555 1.32 LINK C LEU A 70 N MSE A 71 1555 1555 1.34 LINK C MSE A 71 N LYS A 72 1555 1555 1.33 LINK C PHE A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N GLU A 83 1555 1555 1.31 LINK C LEU A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N ATRP A 156 1555 1555 1.32 LINK C MSE A 155 N BTRP A 156 1555 1555 1.34 LINK C ASP A 179 N MSE A 180 1555 1555 1.33 LINK C MSE A 180 N ASN A 181 1555 1555 1.33 LINK C VAL A 189 N MSE A 190 1555 1555 1.32 LINK C MSE A 190 N LEU A 191 1555 1555 1.33 LINK C GLY A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N THR A 199 1555 1555 1.31 LINK C MSE B 1 N LEU B 2 1555 1555 1.34 LINK C TYR B 55 N MSE B 56 1555 1555 1.34 LINK C MSE B 56 N SER B 57 1555 1555 1.32 LINK C LEU B 70 N AMSE B 71 1555 1555 1.32 LINK C LEU B 70 N BMSE B 71 1555 1555 1.33 LINK C AMSE B 71 N LYS B 72 1555 1555 1.34 LINK C BMSE B 71 N LYS B 72 1555 1555 1.32 LINK C PHE B 81 N MSE B 82 1555 1555 1.32 LINK C MSE B 82 N GLU B 83 1555 1555 1.31 LINK C LEU B 154 N MSE B 155 1555 1555 1.34 LINK C MSE B 155 N ATRP B 156 1555 1555 1.33 LINK C MSE B 155 N BTRP B 156 1555 1555 1.33 LINK C ASP B 179 N MSE B 180 1555 1555 1.34 LINK C MSE B 180 N ASN B 181 1555 1555 1.32 LINK C VAL B 189 N MSE B 190 1555 1555 1.31 LINK C MSE B 190 N LEU B 191 1555 1555 1.34 LINK C GLY B 197 N MSE B 198 1555 1555 1.33 LINK C MSE B 198 N THR B 199 1555 1555 1.31 SITE 1 AC1 7 LEU A 90 PHE A 161 VAL A 164 TYR A 165 SITE 2 AC1 7 GLU A 186 OC9 A 302 HOH A 511 SITE 1 AC2 6 TRP A 156 PHE A 157 PHE A 158 PHE A 161 SITE 2 AC2 6 OC9 A 301 HOH A 506 SITE 1 AC3 3 VAL A 109 GLU A 111 LYS A 200 SITE 1 AC4 5 ALA A 142 GLU A 143 ARG A 192 LYS A 196 SITE 2 AC4 5 GLY A 197 SITE 1 AC5 3 SER B 57 VAL B 58 LYS B 61 CRYST1 121.911 50.429 88.098 90.00 129.15 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008203 0.000000 0.006679 0.00000 SCALE2 0.000000 0.019830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014638 0.00000