HEADER HYDROLASE 30-NOV-12 4I7Q TITLE T4 LYSOZYME L99A/M102H WITH 4-TRIFLUOROMETHYLIMIDAZOLE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ENDOLYSIN, LYSIS PROTEIN, MURAMIDASE; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 GENE: E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MERSKI,B.K.SHOICHET REVDAT 3 20-SEP-23 4I7Q 1 REMARK SEQADV LINK REVDAT 2 24-APR-13 4I7Q 1 JRNL REVDAT 1 27-MAR-13 4I7Q 0 JRNL AUTH M.MERSKI,B.K.SHOICHET JRNL TITL THE IMPACT OF INTRODUCING A HISTIDINE INTO AN APOLAR CAVITY JRNL TITL 2 SITE ON DOCKING AND LIGAND RECOGNITION. JRNL REF J.MED.CHEM. V. 56 2874 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23473072 JRNL DOI 10.1021/JM301823G REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 50441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5134 - 3.8960 0.90 3040 130 0.1853 0.2018 REMARK 3 2 3.8960 - 3.0925 0.93 3092 134 0.1706 0.1824 REMARK 3 3 3.0925 - 2.7016 0.95 3144 129 0.1914 0.2072 REMARK 3 4 2.7016 - 2.4546 0.96 3190 137 0.1824 0.2016 REMARK 3 5 2.4546 - 2.2787 0.97 3212 131 0.1769 0.2128 REMARK 3 6 2.2787 - 2.1444 0.98 3261 142 0.1782 0.2212 REMARK 3 7 2.1444 - 2.0370 0.98 3223 139 0.1814 0.2117 REMARK 3 8 2.0370 - 1.9483 0.99 3262 128 0.1882 0.2141 REMARK 3 9 1.9483 - 1.8733 0.99 3304 141 0.1943 0.2348 REMARK 3 10 1.8733 - 1.8086 0.99 3297 133 0.1912 0.2164 REMARK 3 11 1.8086 - 1.7521 0.99 3248 142 0.2028 0.2281 REMARK 3 12 1.7521 - 1.7020 0.99 3278 137 0.2107 0.2668 REMARK 3 13 1.7020 - 1.6572 1.00 3296 139 0.2218 0.2546 REMARK 3 14 1.6572 - 1.6168 0.99 3280 138 0.2236 0.2560 REMARK 3 15 1.6168 - 1.5800 0.99 3281 133 0.2371 0.2505 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 64.03 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.40080 REMARK 3 B22 (A**2) : -0.88290 REMARK 3 B33 (A**2) : -0.51790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.71470 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2937 REMARK 3 ANGLE : 1.256 3974 REMARK 3 CHIRALITY : 0.073 434 REMARK 3 PLANARITY : 0.005 512 REMARK 3 DIHEDRAL : 12.267 1079 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID -10:212 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6073 13.6531 9.9040 REMARK 3 T TENSOR REMARK 3 T11: -0.0478 T22: -0.0287 REMARK 3 T33: -0.0492 T12: 0.0723 REMARK 3 T13: 0.0233 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.5787 L22: 0.3961 REMARK 3 L33: 0.4830 L12: 0.1642 REMARK 3 L13: 0.2372 L23: -0.2899 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: -0.2283 S13: 0.2520 REMARK 3 S21: 0.1674 S22: 0.0178 S23: 0.1619 REMARK 3 S31: -0.1713 S32: -0.1191 S33: 0.3871 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID -9:206 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6068 20.3487 -9.3880 REMARK 3 T TENSOR REMARK 3 T11: 0.0375 T22: 0.0384 REMARK 3 T33: 0.0392 T12: -0.0013 REMARK 3 T13: -0.0098 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.5631 L22: 0.6095 REMARK 3 L33: 0.4956 L12: 0.1549 REMARK 3 L13: 0.0493 L23: 0.2141 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.0342 S13: -0.0385 REMARK 3 S21: -0.0159 S22: 0.0348 S23: -0.0026 REMARK 3 S31: 0.0457 S32: 0.0231 S33: -0.0072 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : TWO FLAT SI(111) CRYSTALS, REMARK 200 MOUNTED IN A MODEL DCM FROM KHOZU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 48.491 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4E97 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 4.5, 30% REMARK 280 (W/V) PEG-6000, 0.3 M LISO4, 3% (W/V) TMAO, 50 MM 2- REMARK 280 MERCAPTOETHANOL, 50 MM 2-HYDROXYETHYL DISULFIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.65500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 MET B -22 REMARK 465 GLY B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 ASP B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -7 CG CD OE1 OE2 REMARK 470 LYS A 16 CD CE NZ REMARK 470 LYS A 35 CD CE NZ REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 ASN A 40 CG OD1 ND2 REMARK 470 LYS A 43 CE NZ REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 65 CE NZ REMARK 470 ARG A 137 CD NE CZ NH1 NH2 REMARK 470 LYS A 162 CE NZ REMARK 470 THR B -8 OG1 CG2 REMARK 470 GLU B -7 CG CD OE1 OE2 REMARK 470 LYS B 48 CE NZ REMARK 470 LYS B 60 CE NZ REMARK 470 ARG B 76 NE CZ NH1 NH2 REMARK 470 LYS B 83 CE NZ REMARK 470 ARG B 137 NE CZ NH1 NH2 REMARK 470 LYS B 162 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 142 70.88 -151.53 REMARK 500 CYS B 142 71.03 -151.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1DQ A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HED A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1DQ B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E97 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH 2-MERCAPTOETHANOL REMARK 900 RELATED ID: 4EKP RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH NITROBENZENE REMARK 900 RELATED ID: 4EKQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH NITROPHENOL REMARK 900 RELATED ID: 4EKR RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH 2-CYANOPHENOL REMARK 900 RELATED ID: 4EKS RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ISOXAZOLE DBREF 4I7Q A 1 164 UNP P00720 LYS_BPT4 1 164 DBREF 4I7Q B 1 164 UNP P00720 LYS_BPT4 1 164 SEQADV 4I7Q MET A -22 UNP P00720 EXPRESSION TAG SEQADV 4I7Q GLY A -21 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS A -20 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS A -19 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS A -18 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS A -17 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS A -16 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS A -15 UNP P00720 EXPRESSION TAG SEQADV 4I7Q ASP A -14 UNP P00720 EXPRESSION TAG SEQADV 4I7Q TYR A -13 UNP P00720 EXPRESSION TAG SEQADV 4I7Q ASP A -12 UNP P00720 EXPRESSION TAG SEQADV 4I7Q ILE A -11 UNP P00720 EXPRESSION TAG SEQADV 4I7Q PRO A -10 UNP P00720 EXPRESSION TAG SEQADV 4I7Q THR A -9 UNP P00720 EXPRESSION TAG SEQADV 4I7Q THR A -8 UNP P00720 EXPRESSION TAG SEQADV 4I7Q GLU A -7 UNP P00720 EXPRESSION TAG SEQADV 4I7Q ASN A -6 UNP P00720 EXPRESSION TAG SEQADV 4I7Q LEU A -5 UNP P00720 EXPRESSION TAG SEQADV 4I7Q TYR A -4 UNP P00720 EXPRESSION TAG SEQADV 4I7Q PHE A -3 UNP P00720 EXPRESSION TAG SEQADV 4I7Q GLN A -2 UNP P00720 EXPRESSION TAG SEQADV 4I7Q GLY A -1 UNP P00720 EXPRESSION TAG SEQADV 4I7Q SER A 0 UNP P00720 EXPRESSION TAG SEQADV 4I7Q CYS A 21 UNP P00720 THR 21 ENGINEERED MUTATION SEQADV 4I7Q ASP A 38 UNP P00720 SER 38 ENGINEERED MUTATION SEQADV 4I7Q ALA A 99 UNP P00720 LEU 99 ENGINEERED MUTATION SEQADV 4I7Q HIS A 102 UNP P00720 MET 102 ENGINEERED MUTATION SEQADV 4I7Q VAL A 108 UNP P00720 GLU 108 ENGINEERED MUTATION SEQADV 4I7Q VAL A 117 UNP P00720 SER 117 ENGINEERED MUTATION SEQADV 4I7Q CYS A 142 UNP P00720 THR 142 ENGINEERED MUTATION SEQADV 4I7Q ASP A 144 UNP P00720 ASN 144 ENGINEERED MUTATION SEQADV 4I7Q MET B -22 UNP P00720 EXPRESSION TAG SEQADV 4I7Q GLY B -21 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS B -20 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS B -19 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS B -18 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS B -17 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS B -16 UNP P00720 EXPRESSION TAG SEQADV 4I7Q HIS B -15 UNP P00720 EXPRESSION TAG SEQADV 4I7Q ASP B -14 UNP P00720 EXPRESSION TAG SEQADV 4I7Q TYR B -13 UNP P00720 EXPRESSION TAG SEQADV 4I7Q ASP B -12 UNP P00720 EXPRESSION TAG SEQADV 4I7Q ILE B -11 UNP P00720 EXPRESSION TAG SEQADV 4I7Q PRO B -10 UNP P00720 EXPRESSION TAG SEQADV 4I7Q THR B -9 UNP P00720 EXPRESSION TAG SEQADV 4I7Q THR B -8 UNP P00720 EXPRESSION TAG SEQADV 4I7Q GLU B -7 UNP P00720 EXPRESSION TAG SEQADV 4I7Q ASN B -6 UNP P00720 EXPRESSION TAG SEQADV 4I7Q LEU B -5 UNP P00720 EXPRESSION TAG SEQADV 4I7Q TYR B -4 UNP P00720 EXPRESSION TAG SEQADV 4I7Q PHE B -3 UNP P00720 EXPRESSION TAG SEQADV 4I7Q GLN B -2 UNP P00720 EXPRESSION TAG SEQADV 4I7Q GLY B -1 UNP P00720 EXPRESSION TAG SEQADV 4I7Q SER B 0 UNP P00720 EXPRESSION TAG SEQADV 4I7Q CYS B 21 UNP P00720 THR 21 ENGINEERED MUTATION SEQADV 4I7Q ASP B 38 UNP P00720 SER 38 ENGINEERED MUTATION SEQADV 4I7Q ALA B 99 UNP P00720 LEU 99 ENGINEERED MUTATION SEQADV 4I7Q HIS B 102 UNP P00720 MET 102 ENGINEERED MUTATION SEQADV 4I7Q VAL B 108 UNP P00720 GLU 108 ENGINEERED MUTATION SEQADV 4I7Q VAL B 117 UNP P00720 SER 117 ENGINEERED MUTATION SEQADV 4I7Q CYS B 142 UNP P00720 THR 142 ENGINEERED MUTATION SEQADV 4I7Q ASP B 144 UNP P00720 ASN 144 ENGINEERED MUTATION SEQRES 1 A 187 MET GLY HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO SEQRES 2 A 187 THR THR GLU ASN LEU TYR PHE GLN GLY SER MET ASN ILE SEQRES 3 A 187 PHE GLU MET LEU ARG ILE ASP GLU GLY LEU ARG LEU LYS SEQRES 4 A 187 ILE TYR LYS ASP CYS GLU GLY TYR TYR THR ILE GLY ILE SEQRES 5 A 187 GLY HIS LEU LEU THR LYS SER PRO ASP LEU ASN ALA ALA SEQRES 6 A 187 LYS SER GLU LEU ASP LYS ALA ILE GLY ARG ASN CYS ASN SEQRES 7 A 187 GLY VAL ILE THR LYS ASP GLU ALA GLU LYS LEU PHE ASN SEQRES 8 A 187 GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN SEQRES 9 A 187 ALA LYS LEU LYS PRO VAL TYR ASP SER LEU ASP ALA VAL SEQRES 10 A 187 ARG ARG CYS ALA ALA ILE ASN HIS VAL PHE GLN MET GLY SEQRES 11 A 187 VAL THR GLY VAL ALA GLY PHE THR ASN VAL LEU ARG MET SEQRES 12 A 187 LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN LEU SEQRES 13 A 187 ALA LYS SER ARG TRP TYR ASN GLN CYS PRO ASP ARG ALA SEQRES 14 A 187 LYS ARG VAL ILE THR THR PHE ARG THR GLY THR TRP ASP SEQRES 15 A 187 ALA TYR LYS ASN LEU SEQRES 1 B 187 MET GLY HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO SEQRES 2 B 187 THR THR GLU ASN LEU TYR PHE GLN GLY SER MET ASN ILE SEQRES 3 B 187 PHE GLU MET LEU ARG ILE ASP GLU GLY LEU ARG LEU LYS SEQRES 4 B 187 ILE TYR LYS ASP CYS GLU GLY TYR TYR THR ILE GLY ILE SEQRES 5 B 187 GLY HIS LEU LEU THR LYS SER PRO ASP LEU ASN ALA ALA SEQRES 6 B 187 LYS SER GLU LEU ASP LYS ALA ILE GLY ARG ASN CYS ASN SEQRES 7 B 187 GLY VAL ILE THR LYS ASP GLU ALA GLU LYS LEU PHE ASN SEQRES 8 B 187 GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN SEQRES 9 B 187 ALA LYS LEU LYS PRO VAL TYR ASP SER LEU ASP ALA VAL SEQRES 10 B 187 ARG ARG CYS ALA ALA ILE ASN HIS VAL PHE GLN MET GLY SEQRES 11 B 187 VAL THR GLY VAL ALA GLY PHE THR ASN VAL LEU ARG MET SEQRES 12 B 187 LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN LEU SEQRES 13 B 187 ALA LYS SER ARG TRP TYR ASN GLN CYS PRO ASP ARG ALA SEQRES 14 B 187 LYS ARG VAL ILE THR THR PHE ARG THR GLY THR TRP ASP SEQRES 15 B 187 ALA TYR LYS ASN LEU HET BME A 201 4 HET 1DQ A 202 9 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HET SO4 A 208 5 HET ACT A 209 4 HET BME A 210 4 HET BME A 211 4 HET HED A 212 8 HET BME B 201 4 HET 1DQ B 202 9 HET SO4 B 203 5 HET SO4 B 204 5 HET ACT B 205 4 HET BME B 206 4 HETNAM BME BETA-MERCAPTOETHANOL HETNAM 1DQ 5-(TRIFLUOROMETHYL)-1H-IMIDAZOLE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM HED 2-HYDROXYETHYL DISULFIDE FORMUL 3 BME 5(C2 H6 O S) FORMUL 4 1DQ 2(C4 H3 F3 N2) FORMUL 5 SO4 8(O4 S 2-) FORMUL 11 ACT 2(C2 H3 O2 1-) FORMUL 14 HED C4 H10 O2 S2 FORMUL 21 HOH *282(H2 O) HELIX 1 1 THR A -9 MET A 1 1 11 HELIX 2 2 ASN A 2 GLY A 12 1 11 HELIX 3 3 ASP A 38 GLY A 51 1 14 HELIX 4 4 THR A 59 ARG A 80 1 22 HELIX 5 5 LYS A 83 LEU A 91 1 9 HELIX 6 6 ASP A 92 GLY A 107 1 16 HELIX 7 7 GLY A 107 GLY A 113 1 7 HELIX 8 8 PHE A 114 GLN A 123 1 10 HELIX 9 9 ARG A 125 ALA A 134 1 10 HELIX 10 10 SER A 136 CYS A 142 1 7 HELIX 11 11 CYS A 142 GLY A 156 1 15 HELIX 12 12 TRP A 158 LYS A 162 5 5 HELIX 13 13 THR B -8 MET B 1 1 10 HELIX 14 14 ASN B 2 GLY B 12 1 11 HELIX 15 15 ASP B 38 GLY B 51 1 14 HELIX 16 16 THR B 59 ARG B 80 1 22 HELIX 17 17 LYS B 83 LEU B 91 1 9 HELIX 18 18 ASP B 92 GLY B 107 1 16 HELIX 19 19 GLY B 107 GLY B 113 1 7 HELIX 20 20 PHE B 114 GLN B 123 1 10 HELIX 21 21 ARG B 125 ALA B 134 1 10 HELIX 22 22 SER B 136 CYS B 142 1 7 HELIX 23 23 CYS B 142 GLY B 156 1 15 HELIX 24 24 TRP B 158 LYS B 162 5 5 SHEET 1 A 3 ARG A 14 LYS A 19 0 SHEET 2 A 3 TYR A 25 GLY A 28 -1 O THR A 26 N TYR A 18 SHEET 3 A 3 HIS A 31 LEU A 32 -1 O HIS A 31 N ILE A 27 SHEET 1 B 3 ARG B 14 LYS B 19 0 SHEET 2 B 3 TYR B 25 GLY B 28 -1 O THR B 26 N TYR B 18 SHEET 3 B 3 HIS B 31 THR B 34 -1 O LEU B 33 N TYR B 25 SSBOND 1 CYS A 21 CYS A 142 1555 1555 2.03 SSBOND 2 CYS B 21 CYS B 142 1555 1555 2.10 LINK SG CYS A 97 S2 BME A 201 1555 1555 2.07 LINK SG CYS B 97 S2 BME B 201 1555 1555 2.07 SITE 1 AC1 6 ILE A 3 ALA A 93 ARG A 96 CYS A 97 SITE 2 AC1 6 HOH A 311 HOH A 354 SITE 1 AC2 11 ILE A 78 LEU A 84 VAL A 87 TYR A 88 SITE 2 AC2 11 LEU A 91 ALA A 99 HIS A 102 VAL A 111 SITE 3 AC2 11 LEU A 118 LEU A 121 PHE A 153 SITE 1 AC3 6 GLY A 30 HIS A 31 LEU A 32 ASP A 70 SITE 2 AC3 6 PHE A 104 HOH A 394 SITE 1 AC4 4 ARG A 14 LEU A 15 LYS A 16 HOH A 319 SITE 1 AC5 4 ARG A 76 ARG A 80 HOH A 421 LYS B 135 SITE 1 AC6 2 ARG A 119 ARG A 125 SITE 1 AC7 7 THR A 151 ARG A 154 HOH A 373 HOH A 386 SITE 2 AC7 7 HOH A 439 HOH A 445 THR B 109 SITE 1 AC8 8 PHE A 4 GLU A 5 ARG A 8 ILE A 29 SITE 2 AC8 8 GLU A 64 PHE A 67 HOH A 336 GLY B 51 SITE 1 AC9 4 LYS A 135 ARG B 80 SO4 B 204 HOH B 392 SITE 1 BC1 8 PHE A -3 ILE A 9 TYR A 161 LEU A 164 SITE 2 BC1 8 HOH A 312 ARG B 52 ASN B 53 HOH B 419 SITE 1 BC2 7 ARG A 125 TRP A 126 ASP A 127 GLU A 128 SITE 2 BC2 7 HOH A 366 HOH A 368 HOH A 370 SITE 1 BC3 6 THR A 109 GLY A 110 GLY A 113 THR B 151 SITE 2 BC3 6 ARG B 154 HOH B 376 SITE 1 BC4 3 TYR B 88 CYS B 97 ILE B 100 SITE 1 BC5 10 LEU B 84 VAL B 87 TYR B 88 LEU B 91 SITE 2 BC5 10 ALA B 99 HIS B 102 VAL B 111 LEU B 118 SITE 3 BC5 10 LEU B 121 PHE B 153 SITE 1 BC6 2 ARG B 119 ARG B 125 SITE 1 BC7 4 ACT A 209 ARG B 76 ARG B 80 HOH B 393 SITE 1 BC8 2 ARG B 14 LEU B 15 SITE 1 BC9 6 GLY B 30 LEU B 32 ASP B 70 PHE B 104 SITE 2 BC9 6 HOH B 345 HOH B 430 CRYST1 48.570 75.310 52.650 90.00 93.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020589 0.000000 0.001180 0.00000 SCALE2 0.000000 0.013278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019025 0.00000