HEADER BIOSYNTHETIC PROTEIN 01-DEC-12 4I7W TITLE AGROBACTERIUM TUMEFACIENS DHDPS WITH LYSINE AND PYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRODIPICOLINATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHDPS; COMPND 5 EC: 4.2.1.52; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM SP.; SOURCE 3 ORGANISM_TAXID: 861208; SOURCE 4 STRAIN: H13-3; SOURCE 5 GENE: DAPA, AGROH133_05014; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM BARREL, LYSINE BIOSYNTHESIS, PYRUVATE BOUND TO ACITVE SITE KEYWDS 2 LYSINE, CYTOSOL, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.C.ATKINSON,C.DOGOVSKI,R.C.J.DOBSON,M.A.PERUGINI REVDAT 1 04-DEC-13 4I7W 0 JRNL AUTH S.C.ATKINSON,C.DOGOVSKI,R.C.J.DOBSON,M.A.PERUGINI JRNL TITL STRUCTURE, FUNCTION AND ALLOSTERY OF THE BONA FIDE DHDPS JRNL TITL 2 FROM THE PLANT PATHOGEN AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6538 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 879 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.695 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4761 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6526 ; 1.058 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 672 ; 5.181 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;33.578 ;24.776 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 796 ;10.579 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ; 9.405 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 750 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3671 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3074 ; 0.284 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4974 ; 0.551 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1687 ; 0.927 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1508 ; 1.579 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4I7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-12. REMARK 100 THE RCSB ID CODE IS RCSB076415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9536 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39292 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M LITHIUM SULFATE MONOHYDRATE, REMARK 280 0.085 M TRIS PH 8.5, 25.5 % (W/V) PEG 4000, 15% (V/V) GLYCEROL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.82000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.82000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.54500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.54500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.82000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.54500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.39000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.82000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.54500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.39000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 VAL A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 GLU A -1 REMARK 465 LYS A 0 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 VAL B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 GLU B -1 REMARK 465 LYS B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CD CE NZ REMARK 470 LYS A 127 CD CE NZ REMARK 470 LYS A 153 CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS B 3 CD CE NZ REMARK 470 LYS B 127 CD CE NZ REMARK 470 LYS B 156 CD CE NZ REMARK 470 LYS B 288 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 2 71.23 27.82 REMARK 500 TYR A 107 -52.94 73.16 REMARK 500 VAL A 140 -55.83 71.69 REMARK 500 TYR B 107 -53.36 73.23 REMARK 500 VAL B 140 -56.99 71.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 527 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 713 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B 597 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 661 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B 690 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH B 716 DISTANCE = 5.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I7U RELATED DB: PDB REMARK 900 RELATED ID: 4I7V RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SER190 AND CYS263 ARE CONSISTENT WITH BOTH DNA SEQUENCING AND THE REMARK 999 CRYSTAL STRUCTURE DBREF 4I7W A 1 294 UNP F0L8Z6 F0L8Z6_AGRSH 23 316 DBREF 4I7W B 1 294 UNP F0L8Z6 F0L8Z6_AGRSH 23 316 SEQADV 4I7W MET A -13 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W ALA A -12 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS A -11 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS A -10 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS A -9 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS A -8 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS A -7 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS A -6 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W VAL A -5 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W ASP A -4 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W ASP A -3 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W ASP A -2 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W GLU A -1 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W LYS A 0 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W SER A 190 UNP F0L8Z6 GLY 212 SEE REMARK 999 SEQADV 4I7W CYS A 263 UNP F0L8Z6 GLY 285 SEE REMARK 999 SEQADV 4I7W MET B -13 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W ALA B -12 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS B -11 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS B -10 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS B -9 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS B -8 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS B -7 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W HIS B -6 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W VAL B -5 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W ASP B -4 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W ASP B -3 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W ASP B -2 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W GLU B -1 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W LYS B 0 UNP F0L8Z6 EXPRESSION TAG SEQADV 4I7W SER B 190 UNP F0L8Z6 GLY 212 SEE REMARK 999 SEQADV 4I7W CYS B 263 UNP F0L8Z6 GLY 285 SEE REMARK 999 SEQRES 1 A 308 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP GLU SEQRES 2 A 308 LYS MET PHE LYS GLY SER ILE PRO ALA LEU ILE THR PRO SEQRES 3 A 308 PHE THR ASP ASN GLY ALA VAL ASP GLU GLN ALA PHE ALA SEQRES 4 A 308 ALA HIS VAL GLU TRP GLN ILE ALA GLU GLY SER ASN GLY SEQRES 5 A 308 LEU VAL PRO VAL GLY THR THR GLY GLU SER PRO THR LEU SEQRES 6 A 308 SER HIS ASP GLU HIS LYS ARG VAL VAL GLU LEU CYS ILE SEQRES 7 A 308 GLU VAL ALA ALA LYS ARG VAL PRO VAL ILE ALA GLY ALA SEQRES 8 A 308 GLY SER ASN ASN THR ASP GLU ALA ILE GLU LEU ALA LEU SEQRES 9 A 308 HIS ALA GLN ASP ALA GLY ALA ASP ALA LEU LEU VAL VAL SEQRES 10 A 308 THR PRO TYR TYR ASN LYS PRO THR GLN LYS GLY LEU PHE SEQRES 11 A 308 ALA HIS PHE SER ALA VAL ALA GLU ALA VAL LYS LEU PRO SEQRES 12 A 308 ILE VAL ILE TYR ASN ILE PRO PRO ARG SER VAL VAL ASP SEQRES 13 A 308 MET SER PRO GLU THR MET GLY ALA LEU VAL LYS ALA HIS SEQRES 14 A 308 LYS ASN ILE VAL GLY VAL KPI ASP ALA THR GLY LYS LEU SEQRES 15 A 308 ASP ARG VAL SER GLU GLN ARG ILE SER CYS GLY LYS ASP SEQRES 16 A 308 PHE ILE GLN LEU SER GLY GLU ASP SER THR ALA LEU GLY SEQRES 17 A 308 PHE ASN ALA HIS GLY GLY VAL GLY CYS ILE SER VAL SER SEQRES 18 A 308 ALA ASN VAL ALA PRO ARG LEU CYS SER GLU PHE GLN ALA SEQRES 19 A 308 ALA MET LEU ALA GLY ASP TYR ALA LYS ALA LEU GLU TYR SEQRES 20 A 308 GLN ASP ARG LEU MET PRO LEU HIS ARG ALA ILE PHE MET SEQRES 21 A 308 GLU PRO GLY VAL CYS GLY THR LYS TYR ALA LEU SER LYS SEQRES 22 A 308 THR ARG GLY CYS ASN ARG LYS VAL ARG SER PRO LEU MET SEQRES 23 A 308 SER THR LEU GLU PRO ALA THR GLU ALA ALA ILE ASP ALA SEQRES 24 A 308 ALA LEU LYS HIS ALA GLY LEU MET ASN SEQRES 1 B 308 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP GLU SEQRES 2 B 308 LYS MET PHE LYS GLY SER ILE PRO ALA LEU ILE THR PRO SEQRES 3 B 308 PHE THR ASP ASN GLY ALA VAL ASP GLU GLN ALA PHE ALA SEQRES 4 B 308 ALA HIS VAL GLU TRP GLN ILE ALA GLU GLY SER ASN GLY SEQRES 5 B 308 LEU VAL PRO VAL GLY THR THR GLY GLU SER PRO THR LEU SEQRES 6 B 308 SER HIS ASP GLU HIS LYS ARG VAL VAL GLU LEU CYS ILE SEQRES 7 B 308 GLU VAL ALA ALA LYS ARG VAL PRO VAL ILE ALA GLY ALA SEQRES 8 B 308 GLY SER ASN ASN THR ASP GLU ALA ILE GLU LEU ALA LEU SEQRES 9 B 308 HIS ALA GLN ASP ALA GLY ALA ASP ALA LEU LEU VAL VAL SEQRES 10 B 308 THR PRO TYR TYR ASN LYS PRO THR GLN LYS GLY LEU PHE SEQRES 11 B 308 ALA HIS PHE SER ALA VAL ALA GLU ALA VAL LYS LEU PRO SEQRES 12 B 308 ILE VAL ILE TYR ASN ILE PRO PRO ARG SER VAL VAL ASP SEQRES 13 B 308 MET SER PRO GLU THR MET GLY ALA LEU VAL LYS ALA HIS SEQRES 14 B 308 LYS ASN ILE VAL GLY VAL KPI ASP ALA THR GLY LYS LEU SEQRES 15 B 308 ASP ARG VAL SER GLU GLN ARG ILE SER CYS GLY LYS ASP SEQRES 16 B 308 PHE ILE GLN LEU SER GLY GLU ASP SER THR ALA LEU GLY SEQRES 17 B 308 PHE ASN ALA HIS GLY GLY VAL GLY CYS ILE SER VAL SER SEQRES 18 B 308 ALA ASN VAL ALA PRO ARG LEU CYS SER GLU PHE GLN ALA SEQRES 19 B 308 ALA MET LEU ALA GLY ASP TYR ALA LYS ALA LEU GLU TYR SEQRES 20 B 308 GLN ASP ARG LEU MET PRO LEU HIS ARG ALA ILE PHE MET SEQRES 21 B 308 GLU PRO GLY VAL CYS GLY THR LYS TYR ALA LEU SER LYS SEQRES 22 B 308 THR ARG GLY CYS ASN ARG LYS VAL ARG SER PRO LEU MET SEQRES 23 B 308 SER THR LEU GLU PRO ALA THR GLU ALA ALA ILE ASP ALA SEQRES 24 B 308 ALA LEU LYS HIS ALA GLY LEU MET ASN MODRES 4I7W KPI A 162 LYS MODRES 4I7W KPI B 162 LYS HET KPI A 162 14 HET KPI B 162 14 HET LYS A 301 10 HET LYS B 301 10 HET GOL B 302 6 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID HETNAM LYS LYSINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KPI 2(C9 H16 N2 O4) FORMUL 3 LYS 2(C6 H15 N2 O2 1+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *879(H2 O) HELIX 1 1 ASP A 20 GLU A 34 1 15 HELIX 2 2 GLU A 47 LEU A 51 5 5 HELIX 3 3 SER A 52 ALA A 68 1 17 HELIX 4 4 ASN A 81 GLY A 96 1 16 HELIX 5 5 THR A 111 VAL A 126 1 16 HELIX 6 6 ILE A 135 VAL A 140 1 6 HELIX 7 7 SER A 144 HIS A 155 1 12 HELIX 8 8 LEU A 168 GLY A 179 1 12 HELIX 9 9 GLU A 188 SER A 190 5 3 HELIX 10 10 THR A 191 HIS A 198 1 8 HELIX 11 11 VAL A 206 VAL A 210 5 5 HELIX 12 12 ALA A 211 ALA A 224 1 14 HELIX 13 13 ASP A 226 PHE A 245 1 20 HELIX 14 14 PRO A 248 GLY A 262 1 15 HELIX 15 15 GLU A 276 ALA A 290 1 15 HELIX 16 16 ASP B 20 GLY B 35 1 16 HELIX 17 17 GLU B 47 LEU B 51 5 5 HELIX 18 18 SER B 52 ALA B 68 1 17 HELIX 19 19 ASN B 81 GLY B 96 1 16 HELIX 20 20 THR B 111 VAL B 126 1 16 HELIX 21 21 ILE B 135 VAL B 140 1 6 HELIX 22 22 SER B 144 HIS B 155 1 12 HELIX 23 23 LEU B 168 GLY B 179 1 12 HELIX 24 24 GLU B 188 SER B 190 5 3 HELIX 25 25 THR B 191 HIS B 198 1 8 HELIX 26 26 VAL B 206 VAL B 210 5 5 HELIX 27 27 ALA B 211 ALA B 224 1 14 HELIX 28 28 ASP B 226 PHE B 245 1 20 HELIX 29 29 PRO B 248 ARG B 261 1 14 HELIX 30 30 GLU B 276 ALA B 290 1 15 SHEET 1 A 7 GLY A 4 PRO A 7 0 SHEET 2 A 7 GLY A 202 SER A 205 1 O CYS A 203 N ILE A 6 SHEET 3 A 7 ILE A 183 SER A 186 1 N SER A 186 O GLY A 202 SHEET 4 A 7 ILE A 158 ASP A 163 1 N VAL A 161 O LEU A 185 SHEET 5 A 7 ILE A 130 ASN A 134 1 N ILE A 132 O KPI A 162 SHEET 6 A 7 ALA A 99 VAL A 103 1 N LEU A 100 O VAL A 131 SHEET 7 A 7 ILE A 74 GLY A 76 1 N ALA A 75 O LEU A 101 SHEET 1 B 7 GLY B 4 PRO B 7 0 SHEET 2 B 7 GLY B 202 SER B 205 1 O CYS B 203 N ILE B 6 SHEET 3 B 7 ILE B 183 SER B 186 1 N SER B 186 O GLY B 202 SHEET 4 B 7 ILE B 158 ASP B 163 1 N VAL B 161 O LEU B 185 SHEET 5 B 7 ILE B 130 ASN B 134 1 N ILE B 132 O KPI B 162 SHEET 6 B 7 ALA B 99 VAL B 103 1 N LEU B 100 O VAL B 131 SHEET 7 B 7 ILE B 74 GLY B 76 1 N ALA B 75 O LEU B 101 LINK C VAL A 161 N KPI A 162 1555 1555 1.34 LINK C KPI A 162 N ASP A 163 1555 1555 1.33 LINK C VAL B 161 N KPI B 162 1555 1555 1.33 LINK C KPI B 162 N ASP B 163 1555 1555 1.33 CISPEP 1 SER A 269 PRO A 270 0 13.38 CISPEP 2 SER B 269 PRO B 270 0 14.13 SITE 1 AC1 11 SER A 48 PRO A 49 LEU A 51 HIS A 56 SITE 2 AC1 11 TYR A 106 HOH A 428 HOH A 431 HOH A 508 SITE 3 AC1 11 ASN B 80 GLU B 84 LYS B 301 SITE 1 AC2 11 ASN A 80 GLU A 84 LYS A 301 SER B 48 SITE 2 AC2 11 PRO B 49 LEU B 51 HIS B 56 TYR B 106 SITE 3 AC2 11 HOH B 415 HOH B 458 HOH B 459 SITE 1 AC3 5 GLU A 247 GLU A 276 THR B 111 GLN B 112 SITE 2 AC3 5 LYS B 113 CRYST1 89.090 122.780 129.640 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011225 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007714 0.00000