HEADER TRANSPORT PROTEIN 07-DEC-12 4IB2 TITLE CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN (RUMGNA_00858) FROM TITLE 2 RUMINOCOCCUS GNAVUS ATCC 29149 AT 1.76 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LIPOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINOCOCCUS GNAVUS; SOURCE 3 ORGANISM_TAXID: 411470; SOURCE 4 STRAIN: ATCC 29149; SOURCE 5 GENE: ZP_02040096.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE METHIONINE-BINDNING, NLPA LIPOPROTEIN, PF03180 FAMILY, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4IB2 1 REMARK SEQADV REVDAT 3 24-JAN-18 4IB2 1 JRNL REVDAT 2 15-NOV-17 4IB2 1 REMARK REVDAT 1 16-JAN-13 4IB2 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN (RUMGNA_00858) JRNL TITL 2 FROM RUMINOCOCCUS GNAVUS ATCC 29149 AT 1.76 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 41847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2110 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.12 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3006 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2106 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2851 REMARK 3 BIN R VALUE (WORKING SET) : 0.2101 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.16 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 155 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3791 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.76390 REMARK 3 B22 (A**2) : 2.06820 REMARK 3 B33 (A**2) : 1.69560 REMARK 3 B12 (A**2) : 2.59700 REMARK 3 B13 (A**2) : -0.36760 REMARK 3 B23 (A**2) : 1.85200 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.233 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3999 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5449 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1897 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 148 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 574 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3999 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 540 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5110 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.75 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.77 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|32 - A|116 A|234 - A|278 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.9443 17.1905 42.3521 REMARK 3 T TENSOR REMARK 3 T11: 0.0217 T22: -0.0657 REMARK 3 T33: -0.0482 T12: -0.0415 REMARK 3 T13: 0.0254 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.5984 L22: 2.6140 REMARK 3 L33: 0.6745 L12: 0.1680 REMARK 3 L13: -0.0229 L23: 0.1982 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.0263 S13: 0.0212 REMARK 3 S21: -0.0277 S22: 0.0372 S23: -0.1789 REMARK 3 S31: -0.0745 S32: 0.0418 S33: -0.0435 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|117 - A|233 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.3934 -6.1769 42.6588 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: -0.0709 REMARK 3 T33: -0.0230 T12: -0.0332 REMARK 3 T13: 0.0285 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.5685 L22: 2.2993 REMARK 3 L33: 0.8740 L12: 0.0840 REMARK 3 L13: 0.0353 L23: -0.2575 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: 0.0617 S13: -0.0786 REMARK 3 S21: 0.0154 S22: 0.0077 S23: 0.1889 REMARK 3 S31: 0.0751 S32: -0.0537 S33: 0.0041 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|36 - B|116 B|234 - B|278 } REMARK 3 ORIGIN FOR THE GROUP (A): 19.5659 -5.3552 14.0209 REMARK 3 T TENSOR REMARK 3 T11: 0.0706 T22: -0.1248 REMARK 3 T33: -0.1839 T12: -0.1008 REMARK 3 T13: 0.0000 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.5741 L22: 1.6248 REMARK 3 L33: 5.6845 L12: -0.7834 REMARK 3 L13: 0.8991 L23: -1.8103 REMARK 3 S TENSOR REMARK 3 S11: -0.0598 S12: 0.0925 S13: 0.1421 REMARK 3 S21: -0.0058 S22: -0.1180 S23: -0.1314 REMARK 3 S31: -0.5606 S32: 0.4568 S33: 0.1777 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|117 - B|233 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.6400 -27.8824 18.0824 REMARK 3 T TENSOR REMARK 3 T11: 0.1900 T22: -0.1776 REMARK 3 T33: -0.1848 T12: -0.0865 REMARK 3 T13: -0.0687 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.6226 L22: 1.3407 REMARK 3 L33: 2.7094 L12: -0.0405 REMARK 3 L13: -0.4234 L23: -0.9938 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.1119 S13: -0.0527 REMARK 3 S21: -0.4844 S22: 0.1589 S23: 0.2957 REMARK 3 S31: 0.4915 S32: -0.2556 S33: -0.1445 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. REMARK 3 2. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. REMARK 3 3. NCS RESTRAINTS WERE IMPOSED BY AUTOBUSTER'S LSSR PROCEDURE (- REMARK 3 AUTONCS). REMARK 3 4. CHLORIDE (CL) AND GLYCEROL (GOL) FROM THE PURIFICATION AND REMARK 3 CRYOPROTECTANT SOLUTION ARE MODELED. REMARK 3 5. ENDOGENOUS METHIONINE (MET) HAS BEEN MODELED AT THE PUTATIVE REMARK 3 ACTIVE SITE BASED ON ELECTRON DENSITY AND COMPARISON WITH OTHER REMARK 3 SIMILAR PROTEIN STRUCTURES AND IS LIKELY THE NATURAL LIGAND. REMARK 4 REMARK 4 4IB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076529. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JANUARY 30, 2009 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41851 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 40.876 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M (NH4)2SO4, 0.1M CITRATE PH 4.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 28 REMARK 465 GLU A 29 REMARK 465 LYS A 30 REMARK 465 GLY A 31 REMARK 465 GLY B 0 REMARK 465 GLU B 28 REMARK 465 GLU B 29 REMARK 465 LYS B 30 REMARK 465 GLY B 31 REMARK 465 SER B 32 REMARK 465 SER B 33 REMARK 465 GLU B 34 REMARK 465 ASP B 35 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS B 37 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 91 -20.03 -162.15 REMARK 500 GLU A 176 -61.37 -93.50 REMARK 500 GLU A 176 -60.68 -94.20 REMARK 500 TYR A 234 56.45 -91.91 REMARK 500 PHE B 91 -18.71 -162.14 REMARK 500 HIS B 107 43.02 -141.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-416853 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 28-278 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4IB2 A 28 278 UNP A7AZY4 A7AZY4_RUMGN 28 278 DBREF 4IB2 B 28 278 UNP A7AZY4 A7AZY4_RUMGN 28 278 SEQADV 4IB2 GLY A 0 UNP A7AZY4 EXPRESSION TAG SEQADV 4IB2 GLY B 0 UNP A7AZY4 EXPRESSION TAG SEQRES 1 A 252 GLY GLU GLU LYS GLY SER SER GLU ASP ALA LYS THR ILE SEQRES 2 A 252 LYS VAL ALA ALA SER ALA THR PRO HIS ALA GLU ILE LEU SEQRES 3 A 252 GLU GLN ALA LYS SER ILE LEU LYS LYS GLU GLY TYR GLN SEQRES 4 A 252 LEU GLU VAL THR VAL PHE ASP ASP TYR VAL GLN PRO ASN SEQRES 5 A 252 GLU VAL VAL GLU SER GLY GLU PHE ASP ALA ASN TYR PHE SEQRES 6 A 252 GLN HIS VAL PRO TYR LEU GLU SER PHE ASN GLU GLU LYS SEQRES 7 A 252 GLY THR HIS LEU VAL ASP ALA GLY ASP ILE HIS TYR GLU SEQRES 8 A 252 PRO PHE GLY ILE TYR PRO GLY THR LYS LYS SER LEU ASP SEQRES 9 A 252 GLU ILE SER GLU GLY ASP LYS ILE ALA VAL PRO ASN ASP SEQRES 10 A 252 THR THR ASN GLU ALA ARG ALA LEU LEU LEU LEU GLN ASP SEQRES 11 A 252 ASN GLY ILE ILE THR LEU LYS ASP GLY ALA GLY LEU ASN SEQRES 12 A 252 ALA THR VAL ASN ASP ILE GLU GLU ASN PRO TYR ASN VAL SEQRES 13 A 252 GLU ILE VAL GLU LEU GLU ALA ALA GLN VAL ALA ARG VAL SEQRES 14 A 252 THR GLY GLU THR ALA TYR VAL VAL LEU ASN GLY ASN TYR SEQRES 15 A 252 ALA LEU GLU ALA GLY TYR SER VAL ALA LYS ASP ALA LEU SEQRES 16 A 252 ALA TYR GLU LYS SER ASP SER GLU ALA ALA LYS THR TYR SEQRES 17 A 252 VAL ASN ILE ILE ALA VAL LYS GLU GLY ASN GLU LYS GLU SEQRES 18 A 252 GLU LYS ILE GLN ALA LEU VAL LYS ALA LEU LYS SER ASP SEQRES 19 A 252 GLU ILE LYS GLU TYR ILE GLU LYS THR TYR ASP GLY ALA SEQRES 20 A 252 VAL ILE PRO PHE GLU SEQRES 1 B 252 GLY GLU GLU LYS GLY SER SER GLU ASP ALA LYS THR ILE SEQRES 2 B 252 LYS VAL ALA ALA SER ALA THR PRO HIS ALA GLU ILE LEU SEQRES 3 B 252 GLU GLN ALA LYS SER ILE LEU LYS LYS GLU GLY TYR GLN SEQRES 4 B 252 LEU GLU VAL THR VAL PHE ASP ASP TYR VAL GLN PRO ASN SEQRES 5 B 252 GLU VAL VAL GLU SER GLY GLU PHE ASP ALA ASN TYR PHE SEQRES 6 B 252 GLN HIS VAL PRO TYR LEU GLU SER PHE ASN GLU GLU LYS SEQRES 7 B 252 GLY THR HIS LEU VAL ASP ALA GLY ASP ILE HIS TYR GLU SEQRES 8 B 252 PRO PHE GLY ILE TYR PRO GLY THR LYS LYS SER LEU ASP SEQRES 9 B 252 GLU ILE SER GLU GLY ASP LYS ILE ALA VAL PRO ASN ASP SEQRES 10 B 252 THR THR ASN GLU ALA ARG ALA LEU LEU LEU LEU GLN ASP SEQRES 11 B 252 ASN GLY ILE ILE THR LEU LYS ASP GLY ALA GLY LEU ASN SEQRES 12 B 252 ALA THR VAL ASN ASP ILE GLU GLU ASN PRO TYR ASN VAL SEQRES 13 B 252 GLU ILE VAL GLU LEU GLU ALA ALA GLN VAL ALA ARG VAL SEQRES 14 B 252 THR GLY GLU THR ALA TYR VAL VAL LEU ASN GLY ASN TYR SEQRES 15 B 252 ALA LEU GLU ALA GLY TYR SER VAL ALA LYS ASP ALA LEU SEQRES 16 B 252 ALA TYR GLU LYS SER ASP SER GLU ALA ALA LYS THR TYR SEQRES 17 B 252 VAL ASN ILE ILE ALA VAL LYS GLU GLY ASN GLU LYS GLU SEQRES 18 B 252 GLU LYS ILE GLN ALA LEU VAL LYS ALA LEU LYS SER ASP SEQRES 19 B 252 GLU ILE LYS GLU TYR ILE GLU LYS THR TYR ASP GLY ALA SEQRES 20 B 252 VAL ILE PRO PHE GLU HET CL A 301 1 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET MET A 305 9 HET GOL A 306 6 HET GOL A 307 6 HET CL B 301 1 HET CL B 302 1 HET CL B 303 1 HET CL B 304 1 HET CL B 305 1 HET MET B 306 9 HET GOL B 307 6 HET GOL B 308 6 HETNAM CL CHLORIDE ION HETNAM MET METHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 9(CL 1-) FORMUL 7 MET 2(C5 H11 N O2 S) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 18 HOH *342(H2 O) HELIX 1 1 SER A 32 LYS A 37 1 6 HELIX 2 2 PRO A 47 GLU A 62 1 16 HELIX 3 3 VAL A 75 SER A 83 1 9 HELIX 4 4 VAL A 94 GLY A 105 1 12 HELIX 5 5 SER A 128 ILE A 132 5 5 HELIX 6 6 ASP A 143 ASN A 157 1 15 HELIX 7 7 ALA A 166 ALA A 170 5 5 HELIX 8 8 THR A 171 ASN A 173 5 3 HELIX 9 9 GLU A 188 THR A 196 5 9 HELIX 10 10 ASN A 205 ALA A 212 1 8 HELIX 11 11 SER A 215 ALA A 220 1 6 HELIX 12 12 SER A 228 TYR A 234 1 7 HELIX 13 13 GLU A 247 LYS A 258 1 12 HELIX 14 14 SER A 259 TYR A 270 1 12 HELIX 15 15 PRO B 47 GLU B 62 1 16 HELIX 16 16 VAL B 75 SER B 83 1 9 HELIX 17 17 VAL B 94 GLY B 105 1 12 HELIX 18 18 SER B 128 ILE B 132 5 5 HELIX 19 19 ASP B 143 ASN B 157 1 15 HELIX 20 20 ALA B 166 ALA B 170 5 5 HELIX 21 21 THR B 171 ASN B 173 5 3 HELIX 22 22 GLU B 188 THR B 196 5 9 HELIX 23 23 ASN B 205 ALA B 212 1 8 HELIX 24 24 SER B 215 ALA B 220 1 6 HELIX 25 25 SER B 228 TYR B 234 1 7 HELIX 26 26 GLU B 247 LYS B 258 1 12 HELIX 27 27 SER B 259 TYR B 270 1 12 SHEET 1 A 6 GLN A 65 VAL A 70 0 SHEET 2 A 6 THR A 38 ALA A 43 1 N VAL A 41 O GLU A 67 SHEET 3 A 6 ALA A 88 HIS A 93 1 O TYR A 90 N ALA A 42 SHEET 4 A 6 VAL A 235 LYS A 241 -1 O ILE A 237 N GLN A 92 SHEET 5 A 6 LEU A 108 TYR A 116 -1 N HIS A 115 O ASN A 236 SHEET 6 A 6 ILE A 275 PRO A 276 -1 O ILE A 275 N TYR A 116 SHEET 1 B 5 GLU A 183 LEU A 187 0 SHEET 2 B 5 LYS A 137 PRO A 141 1 N ILE A 138 O GLU A 183 SHEET 3 B 5 TYR A 201 LEU A 204 1 O VAL A 203 N ALA A 139 SHEET 4 B 5 GLY A 120 PRO A 123 -1 N TYR A 122 O VAL A 202 SHEET 5 B 5 ALA A 222 TYR A 223 -1 O ALA A 222 N ILE A 121 SHEET 1 C 2 THR A 161 LEU A 162 0 SHEET 2 C 2 ILE A 175 GLU A 177 -1 O GLU A 176 N THR A 161 SHEET 1 D 6 GLN B 65 VAL B 70 0 SHEET 2 D 6 THR B 38 ALA B 43 1 N ILE B 39 O GLU B 67 SHEET 3 D 6 ALA B 88 HIS B 93 1 O TYR B 90 N ALA B 42 SHEET 4 D 6 ASN B 236 VAL B 240 -1 O ILE B 237 N GLN B 92 SHEET 5 D 6 VAL B 109 TYR B 116 -1 N HIS B 115 O ASN B 236 SHEET 6 D 6 ILE B 275 PRO B 276 -1 O ILE B 275 N TYR B 116 SHEET 1 E 5 GLU B 183 LEU B 187 0 SHEET 2 E 5 LYS B 137 PRO B 141 1 N ILE B 138 O VAL B 185 SHEET 3 E 5 TYR B 201 LEU B 204 1 O VAL B 203 N ALA B 139 SHEET 4 E 5 GLY B 120 PRO B 123 -1 N TYR B 122 O VAL B 202 SHEET 5 E 5 ALA B 222 TYR B 223 -1 O ALA B 222 N ILE B 121 SHEET 1 F 2 THR B 161 LEU B 162 0 SHEET 2 F 2 ILE B 175 GLU B 177 -1 O GLU B 176 N THR B 161 CISPEP 1 THR A 46 PRO A 47 0 2.91 CISPEP 2 THR B 46 PRO B 47 0 1.82 SITE 1 AC1 5 TYR A 74 GLU A 188 ALA A 190 TYR A 208 SITE 2 AC1 5 HOH A 447 SITE 1 AC2 2 SER A 128 LEU A 129 SITE 1 AC3 1 ILE A 184 SITE 1 AC4 3 LYS A 137 ALA A 200 HOH A 471 SITE 1 AC5 15 HIS A 48 TYR A 74 PHE A 91 GLN A 92 SITE 2 AC5 15 HIS A 93 TYR A 96 GLU A 117 ASN A 146 SITE 3 AC5 15 ARG A 149 ASN A 205 ASN A 207 ASN A 236 SITE 4 AC5 15 HOH A 413 HOH A 424 HOH A 451 SITE 1 AC6 8 ASP A 35 LYS A 40 GLY A 84 GLU A 85 SITE 2 AC6 8 ASP A 87 SER A 128 ASP A 130 HOH A 477 SITE 1 AC7 7 LEU A 129 ASP A 130 ILE A 132 ASN A 157 SITE 2 AC7 7 GLY A 158 TYR A 180 HOH A 605 SITE 1 AC8 1 TYR B 223 SITE 1 AC9 1 ILE B 184 SITE 1 BC1 3 LYS B 137 HOH B 431 HOH B 496 SITE 1 BC2 2 SER B 128 LEU B 129 SITE 1 BC3 4 TYR B 74 GLU B 188 ALA B 190 TYR B 208 SITE 1 BC4 15 HIS B 48 TYR B 74 PHE B 91 GLN B 92 SITE 2 BC4 15 HIS B 93 TYR B 96 GLU B 117 ASN B 146 SITE 3 BC4 15 ARG B 149 ASN B 205 ASN B 207 ASN B 236 SITE 4 BC4 15 HOH B 407 HOH B 433 HOH B 437 SITE 1 BC5 6 LYS A 246 GLU A 247 HOH A 444 GLU B 211 SITE 2 BC5 6 ALA B 212 GLY B 213 SITE 1 BC6 4 GLU B 50 THR B 269 TYR B 270 HOH B 528 CRYST1 40.099 52.454 54.908 99.81 87.50 94.96 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024938 0.002164 -0.000737 0.00000 SCALE2 0.000000 0.019136 0.003249 0.00000 SCALE3 0.000000 0.000000 0.018491 0.00000