HEADER SIGNALING PROTEIN, ELECTRON TRANSPORT 07-DEC-12 4IB4
TITLE CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF 5-HT2B-BRIL IN COMPLEX
TITLE 2 WITH ERGOTAMINE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CHIMERA PROTEIN OF HUMAN 5-HYDROXYTRYPTAMINE RECEPTOR 2B
COMPND 3 AND E. COLI SOLUBLE CYTOCHROME B562;
COMPND 4 CHAIN: A;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606, 562;
SOURCE 5 GENE: HTR2B, CYBC;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC
KEYWDS ERGOTAMINE, NOVEL PROTEIN ENGINEERING, GPCR NETWORK, MEMBRANE
KEYWDS 2 PROTEIN, PSI-BIOLOGY, STRUCTURAL GENOMICS, GPCR, SIGNALING PROTEIN,
KEYWDS 3 ELECTRON TRANSPORT, GPCR DOCK
EXPDTA X-RAY DIFFRACTION
AUTHOR D.WACKER,C.WANG,V.KATRITCH,G.W.HAN,X.HUANG,E.VARDY,J.D.MCCORVY,
AUTHOR 2 Y.JIANG,M.CHU,F.Y.SIU,W.LIU,H.E.XU,V.CHEREZOV,B.L.ROTH,R.C.STEVENS,
AUTHOR 3 GPCR NETWORK (GPCR)
REVDAT 8 06-NOV-24 4IB4 1 REMARK
REVDAT 7 20-SEP-23 4IB4 1 REMARK SEQADV LINK
REVDAT 6 15-NOV-17 4IB4 1 REMARK
REVDAT 5 07-JUN-17 4IB4 1 COMPND SOURCE REMARK
REVDAT 4 15-MAY-13 4IB4 1 JRNL
REVDAT 3 10-APR-13 4IB4 1 JRNL
REVDAT 2 03-APR-13 4IB4 1 JRNL
REVDAT 1 13-MAR-13 4IB4 0
JRNL AUTH D.WACKER,C.WANG,V.KATRITCH,G.W.HAN,X.P.HUANG,E.VARDY,
JRNL AUTH 2 J.D.MCCORVY,Y.JIANG,M.CHU,F.Y.SIU,W.LIU,H.E.XU,V.CHEREZOV,
JRNL AUTH 3 B.L.ROTH,R.C.STEVENS
JRNL TITL STRUCTURAL FEATURES FOR FUNCTIONAL SELECTIVITY AT SEROTONIN
JRNL TITL 2 RECEPTORS.
JRNL REF SCIENCE V. 340 615 2013
JRNL REFN ISSN 0036-8075
JRNL PMID 23519215
JRNL DOI 10.1126/SCIENCE.1232808
REMARK 2
REMARK 2 RESOLUTION. 2.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.84
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7
REMARK 3 NUMBER OF REFLECTIONS : 15818
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.227
REMARK 3 R VALUE (WORKING SET) : 0.224
REMARK 3 FREE R VALUE : 0.266
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200
REMARK 3 FREE R VALUE TEST SET COUNT : 823
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 2.8900 - 2.7000 0.91 2735 162 0.2596 0.2540
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : NULL
REMARK 3 SHRINKAGE RADIUS : NULL
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 72.10
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.04
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -2.01210
REMARK 3 B22 (A**2) : -1.23750
REMARK 3 B33 (A**2) : 3.24970
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.009 3121
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL 1432
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|48 - A|400 }
REMARK 3 ORIGIN FOR THE GROUP (A): 22.3909 17.7334 -2.6841
REMARK 3 T TENSOR
REMARK 3 T11: -0.0480 T22: -0.2239
REMARK 3 T33: -0.1946 T12: 0.0189
REMARK 3 T13: -0.0017 T23: -0.0207
REMARK 3 L TENSOR
REMARK 3 L11: 1.7189 L22: 1.5218
REMARK 3 L33: 2.7370 L12: 0.0732
REMARK 3 L13: -0.4784 L23: 0.6197
REMARK 3 S TENSOR
REMARK 3 S11: 0.0917 S12: 0.0111 S13: 0.1175
REMARK 3 S21: -0.0336 S22: -0.0676 S23: 0.0689
REMARK 3 S31: -0.0945 S32: -0.0891 S33: -0.0240
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { A|1001- A|1106 }
REMARK 3 ORIGIN FOR THE GROUP (A): 47.5778 5.8100 -45.2388
REMARK 3 T TENSOR
REMARK 3 T11: -0.1673 T22: 0.2320
REMARK 3 T33: -0.2113 T12: -0.0730
REMARK 3 T13: -0.0564 T23: -0.1484
REMARK 3 L TENSOR
REMARK 3 L11: 2.8264 L22: 0.1612
REMARK 3 L33: 3.2782 L12: -0.0790
REMARK 3 L13: 0.1103 L23: -1.3957
REMARK 3 S TENSOR
REMARK 3 S11: 0.0176 S12: -0.1509 S13: 0.0292
REMARK 3 S21: 0.0616 S22: -0.0076 S23: 0.0432
REMARK 3 S31: 0.0267 S32: 0.0473 S33: -0.0100
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { A|2002 - A|2002 }
REMARK 3 ORIGIN FOR THE GROUP (A): 5.3036 33.5433 -9.5529
REMARK 3 T TENSOR
REMARK 3 T11: -0.0176 T22: 0.0061
REMARK 3 T33: -0.0015 T12: 0.0658
REMARK 3 T13: 0.0103 T23: -0.0175
REMARK 3 L TENSOR
REMARK 3 L11: 0.0574 L22: 0.0037
REMARK 3 L33: 0.0000 L12: -0.5008
REMARK 3 L13: 0.1414 L23: 0.0997
REMARK 3 S TENSOR
REMARK 3 S11: 0.0014 S12: 0.0138 S13: 0.0053
REMARK 3 S21: -0.0019 S22: -0.0026 S23: -0.0032
REMARK 3 S31: 0.0004 S32: -0.0014 S33: 0.0012
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4IB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-13.
REMARK 100 THE DEPOSITION ID IS D_1000076531.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : AUG-12
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.0
REMARK 200 NUMBER OF CRYSTALS USED : 17
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-ID-D
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0330
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000
REMARK 200 DATA SCALING SOFTWARE : HKL-3000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16041
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5
REMARK 200 DATA REDUNDANCY : 3.200
REMARK 200 R MERGE (I) : 0.15000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80
REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2
REMARK 200 DATA REDUNDANCY IN SHELL : 3.10
REMARK 200 R MERGE FOR SHELL (I) : 0.91000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 3PBL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 61.61
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/HCL PH 8.0, 100 MM
REMARK 280 MAGNESIUM SULFATE AND 30% (V/V) PEG400, LIPID CUBIC PHASE (LCP) ,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.30350
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.30350
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.28550
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.87500
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.28550
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.87500
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.30350
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.28550
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.87500
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.30350
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.28550
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.87500
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASP A 26
REMARK 465 TYR A 27
REMARK 465 LYS A 28
REMARK 465 ASP A 29
REMARK 465 ASP A 30
REMARK 465 ASP A 31
REMARK 465 ASP A 32
REMARK 465 GLY A 33
REMARK 465 ALA A 34
REMARK 465 PRO A 35
REMARK 465 THR A 36
REMARK 465 GLU A 37
REMARK 465 SER A 38
REMARK 465 ILE A 39
REMARK 465 PRO A 40
REMARK 465 GLU A 41
REMARK 465 GLU A 42
REMARK 465 MET A 43
REMARK 465 LYS A 44
REMARK 465 GLN A 45
REMARK 465 ILE A 46
REMARK 465 VAL A 47
REMARK 465 ASP A 198
REMARK 465 VAL A 199
REMARK 465 ASP A 200
REMARK 465 ALA A 1043
REMARK 465 THR A 1044
REMARK 465 PRO A 1045
REMARK 465 PRO A 1046
REMARK 465 LYS A 1047
REMARK 465 LEU A 1048
REMARK 465 GLU A 1049
REMARK 465 ASP A 1050
REMARK 465 LYS A 1051
REMARK 465 SER A 1052
REMARK 465 PRO A 1053
REMARK 465 ASP A 1054
REMARK 465 SER A 1055
REMARK 465 PRO A 1056
REMARK 465 GLU A 1057
REMARK 465 MET A 1058
REMARK 465 ALA A 401
REMARK 465 THR A 402
REMARK 465 LYS A 403
REMARK 465 SER A 404
REMARK 465 VAL A 405
REMARK 465 GLY A 406
REMARK 465 ARG A 407
REMARK 465 PRO A 408
REMARK 465 LEU A 409
REMARK 465 GLU A 410
REMARK 465 VAL A 411
REMARK 465 LEU A 412
REMARK 465 PHE A 413
REMARK 465 GLN A 414
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 53 CG CD CE NZ
REMARK 470 LYS A 84 CE NZ
REMARK 470 GLU A 118 CG CD OE1 OE2
REMARK 470 MET A 120 CG SD CE
REMARK 470 VAL A 126 CG1 CG2
REMARK 470 LEU A 127 CG CD1 CD2
REMARK 470 ILE A 161 CG1 CG2 CD1
REMARK 470 GLN A 162 CG CD OE1 NE2
REMARK 470 ASN A 164 CG OD1 ND2
REMARK 470 GLN A 165 CG CD OE1 NE2
REMARK 470 TYR A 166 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 ARG A 169 CZ NH1 NH2
REMARK 470 ILE A 195 CG1 CG2 CD1
REMARK 470 GLU A 196 CD OE1 OE2
REMARK 470 THR A 197 OG1 CG2
REMARK 470 ASN A 203 CG OD1 ND2
REMARK 470 ILE A 205 CG1 CG2 CD1
REMARK 470 GLU A 212 CG CD OE1 OE2
REMARK 470 LEU A1003 CG CD1 CD2
REMARK 470 ASP A1039 CG OD1 OD2
REMARK 470 GLN A1041 CG CD OE1 NE2
REMARK 470 LYS A1042 CD CE NZ
REMARK 470 LYS A1059 CG CD CE NZ
REMARK 470 PHE A1061 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 PHE A1065 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ASP A1073 CG OD1 OD2
REMARK 470 ASP A1074 CG OD1 OD2
REMARK 470 LYS A1083 CG CD CE NZ
REMARK 470 GLU A1092 CD OE1 OE2
REMARK 470 ILE A1102 CG1 CG2 CD1
REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 324 CD CE NZ
REMARK 470 ASP A 351 CG OD1 OD2
REMARK 470 THR A 357 OG1 CG2
REMARK 470 LYS A 385 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 VAL A 64 -60.32 -125.48
REMARK 500 PHE A 117 -157.28 -108.20
REMARK 500 LYS A 159 78.00 -118.54
REMARK 500 ILE A 161 -156.61 -90.72
REMARK 500 PHE A 226 -53.18 -121.82
REMARK 500 ASN A 398 -64.92 -92.06
REMARK 500 TYR A 399 18.85 57.05
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 OLC A 2004
REMARK 610 OLB A 2005
REMARK 610 OLB A 2006
REMARK 610 OLB A 2007
REMARK 610 OLA A 2009
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ERM A 2001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 2002
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLR A 2003
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 2004
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLB A 2005
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLB A 2006
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLB A 2007
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 2008
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 2009
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 2010
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 2011
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: GPCR-4 RELATED DB: TARGETTRACK
DBREF 4IB4 A 36 248 UNP P41595 5HT2B_HUMAN 36 248
DBREF 4IB4 A 1001 1106 UNP P0ABE7 C562_ECOLX 23 128
DBREF 4IB4 A 314 405 UNP P41595 5HT2B_HUMAN 314 405
SEQADV 4IB4 ASP A 26 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 TYR A 27 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 LYS A 28 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 ASP A 29 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 ASP A 30 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 ASP A 31 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 ASP A 32 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 GLY A 33 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 ALA A 34 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 PRO A 35 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 TRP A 144 UNP P41595 MET 144 ENGINEERED MUTATION
SEQADV 4IB4 TRP A 1007 UNP P0ABE7 MET 29 ENGINEERED MUTATION
SEQADV 4IB4 ILE A 1102 UNP P0ABE7 HIS 124 ENGINEERED MUTATION
SEQADV 4IB4 LEU A 1106 UNP P0ABE7 ARG 128 ENGINEERED MUTATION
SEQADV 4IB4 GLY A 406 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 ARG A 407 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 PRO A 408 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 LEU A 409 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 GLU A 410 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 VAL A 411 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 LEU A 412 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 PHE A 413 UNP P41595 EXPRESSION TAG
SEQADV 4IB4 GLN A 414 UNP P41595 EXPRESSION TAG
SEQRES 1 A 430 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO THR GLU SER
SEQRES 2 A 430 ILE PRO GLU GLU MET LYS GLN ILE VAL GLU GLU GLN GLY
SEQRES 3 A 430 ASN LYS LEU HIS TRP ALA ALA LEU LEU ILE LEU MET VAL
SEQRES 4 A 430 ILE ILE PRO THR ILE GLY GLY ASN THR LEU VAL ILE LEU
SEQRES 5 A 430 ALA VAL SER LEU GLU LYS LYS LEU GLN TYR ALA THR ASN
SEQRES 6 A 430 TYR PHE LEU MET SER LEU ALA VAL ALA ASP LEU LEU VAL
SEQRES 7 A 430 GLY LEU PHE VAL MET PRO ILE ALA LEU LEU THR ILE MET
SEQRES 8 A 430 PHE GLU ALA MET TRP PRO LEU PRO LEU VAL LEU CYS PRO
SEQRES 9 A 430 ALA TRP LEU PHE LEU ASP VAL LEU PHE SER THR ALA SER
SEQRES 10 A 430 ILE TRP HIS LEU CYS ALA ILE SER VAL ASP ARG TYR ILE
SEQRES 11 A 430 ALA ILE LYS LYS PRO ILE GLN ALA ASN GLN TYR ASN SER
SEQRES 12 A 430 ARG ALA THR ALA PHE ILE LYS ILE THR VAL VAL TRP LEU
SEQRES 13 A 430 ILE SER ILE GLY ILE ALA ILE PRO VAL PRO ILE LYS GLY
SEQRES 14 A 430 ILE GLU THR ASP VAL ASP ASN PRO ASN ASN ILE THR CYS
SEQRES 15 A 430 VAL LEU THR LYS GLU ARG PHE GLY ASP PHE MET LEU PHE
SEQRES 16 A 430 GLY SER LEU ALA ALA PHE PHE THR PRO LEU ALA ILE MET
SEQRES 17 A 430 ILE VAL THR TYR PHE LEU THR ILE HIS ALA LEU GLN LYS
SEQRES 18 A 430 LYS ALA ALA ASP LEU GLU ASP ASN TRP GLU THR LEU ASN
SEQRES 19 A 430 ASP ASN LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA
SEQRES 20 A 430 GLN VAL LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA
SEQRES 21 A 430 LEU ASP ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP
SEQRES 22 A 430 LYS SER PRO ASP SER PRO GLU MET LYS ASP PHE ARG HIS
SEQRES 23 A 430 GLY PHE ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU
SEQRES 24 A 430 LYS LEU ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA
SEQRES 25 A 430 ALA ALA GLU GLN LEU LYS THR THR ARG ASN ALA TYR ILE
SEQRES 26 A 430 GLN LYS TYR LEU GLN THR ILE SER ASN GLU GLN ARG ALA
SEQRES 27 A 430 SER LYS VAL LEU GLY ILE VAL PHE PHE LEU PHE LEU LEU
SEQRES 28 A 430 MET TRP CYS PRO PHE PHE ILE THR ASN ILE THR LEU VAL
SEQRES 29 A 430 LEU CYS ASP SER CYS ASN GLN THR THR LEU GLN MET LEU
SEQRES 30 A 430 LEU GLU ILE PHE VAL TRP ILE GLY TYR VAL SER SER GLY
SEQRES 31 A 430 VAL ASN PRO LEU VAL TYR THR LEU PHE ASN LYS THR PHE
SEQRES 32 A 430 ARG ASP ALA PHE GLY ARG TYR ILE THR CYS ASN TYR ARG
SEQRES 33 A 430 ALA THR LYS SER VAL GLY ARG PRO LEU GLU VAL LEU PHE
SEQRES 34 A 430 GLN
HET ERM A2001 43
HET PLM A2002 17
HET CLR A2003 28
HET OLC A2004 19
HET OLB A2005 15
HET OLB A2006 16
HET OLB A2007 16
HET OLA A2008 20
HET OLA A2009 17
HET PEG A2010 7
HET PEG A2011 7
HETNAM ERM ERGOTAMINE
HETNAM PLM PALMITIC ACID
HETNAM CLR CHOLESTEROL
HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETNAM OLA OLEIC ACID
HETNAM PEG DI(HYDROXYETHYL)ETHER
HETSYN OLC 1-OLEOYL-R-GLYCEROL
FORMUL 2 ERM C33 H35 N5 O5
FORMUL 3 PLM C16 H32 O2
FORMUL 4 CLR C27 H46 O
FORMUL 5 OLC C21 H40 O4
FORMUL 6 OLB 3(C21 H40 O4)
FORMUL 9 OLA 2(C18 H34 O2)
FORMUL 11 PEG 2(C4 H10 O3)
FORMUL 13 HOH *9(H2 O)
HELIX 1 1 LYS A 53 VAL A 64 1 12
HELIX 2 2 VAL A 64 GLU A 82 1 19
HELIX 3 3 LYS A 83 GLN A 86 5 4
HELIX 4 4 TYR A 87 VAL A 107 1 21
HELIX 5 5 VAL A 107 LEU A 112 1 6
HELIX 6 6 LEU A 112 PHE A 117 1 6
HELIX 7 7 VAL A 126 LYS A 159 1 34
HELIX 8 8 ASN A 164 ILE A 188 1 25
HELIX 9 9 ILE A 188 GLY A 194 1 7
HELIX 10 10 THR A 210 PHE A 226 1 17
HELIX 11 11 PHE A 226 ALA A 1020 1 43
HELIX 12 12 ASN A 1022 ALA A 1037 1 16
HELIX 13 13 ALA A 1037 LYS A 1042 1 6
HELIX 14 14 ASP A 1060 GLY A 1082 1 23
HELIX 15 15 LYS A 1083 GLN A 1093 1 11
HELIX 16 16 LEU A 1094 CYS A 350 1 50
HELIX 17 17 ASN A 354 LEU A 382 1 29
HELIX 18 18 ASN A 384 ILE A 395 1 12
SSBOND 1 CYS A 128 CYS A 207 1555 1555 2.04
SSBOND 2 CYS A 350 CYS A 353 1555 1555 2.04
LINK SG CYS A 397 C1 PLM A2002 1555 1555 1.66
SITE 1 AC1 16 ASP A 135 VAL A 136 SER A 139 THR A 140
SITE 2 AC1 16 VAL A 208 LEU A 209 THR A 210 LYS A 211
SITE 3 AC1 16 MET A 218 ALA A 225 TRP A 337 PHE A 340
SITE 4 AC1 16 ASN A 344 LEU A 347 GLN A 359 HOH A2020
SITE 1 AC2 5 ILE A 66 THR A 343 ILE A 395 THR A 396
SITE 2 AC2 5 CYS A 397
SITE 1 AC3 4 GLY A 70 THR A 73 TYR A 394 TYR A 399
SITE 1 AC4 5 SER A 150 MET A 233 THR A 240 LEU A 326
SITE 2 AC4 5 HOH A2017
SITE 1 AC5 2 PRO A 191 ILE A 192
SITE 1 AC6 3 MET A 360 TYR A 399 OLB A2007
SITE 1 AC7 3 LEU A 81 TYR A 399 OLB A2006
SITE 1 AC8 1 TRP A 56
SITE 1 AC9 4 GLY A 185 LYS A 193 ASP A 216 PHE A 217
SITE 1 BC1 2 TYR A 380 ASN A 384
SITE 1 BC2 1 ILE A 182
CRYST1 60.571 119.750 170.607 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016510 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008351 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005861 0.00000