HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 08-DEC-12 4IBD TITLE EBOLA VIRUS VP35 BOUND TO SMALL MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE COFACTOR VP35; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 215-340; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS; SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 128952; SOURCE 5 STRAIN: MAYINGA-76; SOURCE 6 GENE: VP35; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET15B KEYWDS INTERFERON INHIBITOR DOMAIN, TRANSCRIPTION-TRANSCRIPTION INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.S.BROWN,D.W.LEUNG,W.XU,D.M.BOREK,Z.OTWINOWSKI,P.RAMANAN,A.J.STUBBS, AUTHOR 2 D.S.PETERSON,J.M.BINNING,G.K.AMARASINGHE REVDAT 5 28-FEB-24 4IBD 1 REMARK SEQADV LINK REVDAT 4 17-JUL-19 4IBD 1 REMARK REVDAT 3 15-NOV-17 4IBD 1 REMARK REVDAT 2 14-MAY-14 4IBD 1 JRNL REVDAT 1 19-MAR-14 4IBD 0 JRNL AUTH C.S.BROWN,M.S.LEE,D.W.LEUNG,T.WANG,W.XU,P.LUTHRA, JRNL AUTH 2 M.ANANTPADMA,R.S.SHABMAN,L.M.MELITO,K.S.MACMILLAN,D.M.BOREK, JRNL AUTH 3 Z.OTWINOWSKI,P.RAMANAN,A.J.STUBBS,D.S.PETERSON,J.M.BINNING, JRNL AUTH 4 M.TONELLI,M.A.OLSON,R.A.DAVEY,J.M.READY,C.F.BASLER, JRNL AUTH 5 G.K.AMARASINGHE JRNL TITL IN SILICO DERIVED SMALL MOLECULES BIND THE FILOVIRUS VP35 JRNL TITL 2 PROTEIN AND INHIBIT ITS POLYMERASE COFACTOR ACTIVITY. JRNL REF J.MOL.BIOL. V. 426 2045 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24495995 JRNL DOI 10.1016/J.JMB.2014.01.010 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 21830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3824 - 3.6771 1.00 2764 140 0.1697 0.2078 REMARK 3 2 3.6771 - 2.9190 1.00 2642 138 0.1569 0.2188 REMARK 3 3 2.9190 - 2.5502 1.00 2602 151 0.1638 0.2258 REMARK 3 4 2.5502 - 2.3171 1.00 2588 140 0.1549 0.1829 REMARK 3 5 2.3171 - 2.1510 1.00 2563 138 0.1648 0.2647 REMARK 3 6 2.1510 - 2.0242 1.00 2579 127 0.1932 0.2552 REMARK 3 7 2.0242 - 1.9228 1.00 2546 141 0.2456 0.3166 REMARK 3 8 1.9228 - 1.8391 0.95 2424 147 0.2948 0.3703 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2132 REMARK 3 ANGLE : 1.239 2918 REMARK 3 CHIRALITY : 0.060 315 REMARK 3 PLANARITY : 0.005 387 REMARK 3 DIHEDRAL : 16.065 848 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8918 22.2972 -11.8077 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.1149 REMARK 3 T33: 0.1919 T12: 0.0131 REMARK 3 T13: -0.0124 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 5.8611 L22: 2.3442 REMARK 3 L33: 4.2588 L12: -0.0642 REMARK 3 L13: -1.4989 L23: -0.3115 REMARK 3 S TENSOR REMARK 3 S11: -0.1177 S12: 0.4492 S13: -0.7957 REMARK 3 S21: -0.1875 S22: 0.2388 S23: 0.1351 REMARK 3 S31: 0.2730 S32: -0.2727 S33: 0.1883 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0513 28.8559 -8.2269 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: 0.0839 REMARK 3 T33: 0.0947 T12: 0.0089 REMARK 3 T13: -0.0016 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.3593 L22: 0.4100 REMARK 3 L33: 2.9464 L12: -0.0552 REMARK 3 L13: -0.9773 L23: -0.2015 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.2601 S13: -0.1603 REMARK 3 S21: 0.0465 S22: 0.0317 S23: 0.1037 REMARK 3 S31: -0.0446 S32: -0.0447 S33: -0.0108 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9335 37.0964 -10.9586 REMARK 3 T TENSOR REMARK 3 T11: 0.1455 T22: 0.1601 REMARK 3 T33: 0.1663 T12: -0.0222 REMARK 3 T13: 0.0111 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 4.2041 L22: 0.4901 REMARK 3 L33: 4.8934 L12: 0.7036 REMARK 3 L13: -2.0843 L23: -0.0577 REMARK 3 S TENSOR REMARK 3 S11: 0.3538 S12: 0.7888 S13: 0.8125 REMARK 3 S21: -0.0284 S22: 0.1174 S23: 0.4581 REMARK 3 S31: -0.5883 S32: 0.1520 S33: -0.0370 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9568 27.8556 5.1955 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: 0.1678 REMARK 3 T33: 0.1534 T12: -0.0542 REMARK 3 T13: -0.0029 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.7310 L22: 1.3173 REMARK 3 L33: 4.4393 L12: -1.0050 REMARK 3 L13: -0.2722 L23: -0.7816 REMARK 3 S TENSOR REMARK 3 S11: -0.1382 S12: -0.4380 S13: -0.0717 REMARK 3 S21: 0.2356 S22: 0.1726 S23: -0.1198 REMARK 3 S31: 0.2193 S32: -0.0357 S33: 0.0071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0671 30.6116 8.1633 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1543 REMARK 3 T33: 0.0864 T12: -0.0265 REMARK 3 T13: -0.0095 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.9793 L22: 0.9974 REMARK 3 L33: 4.5337 L12: 0.1141 REMARK 3 L13: -0.7280 L23: 0.0343 REMARK 3 S TENSOR REMARK 3 S11: 0.0557 S12: -0.1914 S13: 0.1322 REMARK 3 S21: 0.1629 S22: -0.1018 S23: 0.0652 REMARK 3 S31: 0.0991 S32: 0.1243 S33: -0.0258 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 217 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7124 21.8049 35.3737 REMARK 3 T TENSOR REMARK 3 T11: 0.1909 T22: 0.0716 REMARK 3 T33: 0.2690 T12: 0.0384 REMARK 3 T13: -0.0430 T23: 0.0967 REMARK 3 L TENSOR REMARK 3 L11: 4.2687 L22: 1.8433 REMARK 3 L33: 2.3531 L12: -1.0191 REMARK 3 L13: -0.4646 L23: 0.1913 REMARK 3 S TENSOR REMARK 3 S11: -0.1426 S12: -0.4652 S13: -0.9920 REMARK 3 S21: 0.3924 S22: -0.1803 S23: -0.2691 REMARK 3 S31: 0.4188 S32: 0.2069 S33: -0.0397 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3202 25.5642 27.3421 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.0426 REMARK 3 T33: 0.1221 T12: 0.0115 REMARK 3 T13: 0.0062 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 4.1653 L22: 0.4658 REMARK 3 L33: 3.1579 L12: 0.7370 REMARK 3 L13: -1.2961 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.1677 S12: 0.1425 S13: -0.7385 REMARK 3 S21: -0.1252 S22: 0.1220 S23: -0.1702 REMARK 3 S31: 0.0923 S32: 0.0759 S33: 0.0749 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 253 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8601 32.0729 36.3722 REMARK 3 T TENSOR REMARK 3 T11: 0.1077 T22: 0.1522 REMARK 3 T33: 0.0975 T12: -0.0131 REMARK 3 T13: -0.0100 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.8803 L22: 0.9091 REMARK 3 L33: 4.2010 L12: -0.9132 REMARK 3 L13: -2.2304 L23: 0.7058 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: -0.4080 S13: 0.0677 REMARK 3 S21: 0.0435 S22: 0.0705 S23: -0.1499 REMARK 3 S31: -0.0019 S32: 0.3845 S33: -0.0423 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 269 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9768 36.6389 34.3215 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.0943 REMARK 3 T33: 0.1955 T12: 0.0134 REMARK 3 T13: 0.0213 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 2.8260 L22: 0.1498 REMARK 3 L33: 5.0541 L12: 0.1825 REMARK 3 L13: -1.9317 L23: -0.7974 REMARK 3 S TENSOR REMARK 3 S11: 0.2096 S12: -0.2759 S13: 0.5169 REMARK 3 S21: -0.1152 S22: 0.0904 S23: -0.0863 REMARK 3 S31: -0.5453 S32: -0.2669 S33: -0.0779 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 284 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0893 30.2273 18.6625 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1107 REMARK 3 T33: 0.1498 T12: -0.0364 REMARK 3 T13: 0.0214 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.5427 L22: 2.2617 REMARK 3 L33: 3.0254 L12: 0.6275 REMARK 3 L13: -0.1247 L23: 0.7514 REMARK 3 S TENSOR REMARK 3 S11: -0.1711 S12: 0.1928 S13: 0.2669 REMARK 3 S21: -0.3935 S22: -0.0370 S23: 0.4415 REMARK 3 S31: -0.1505 S32: 0.3752 S33: -0.0684 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 300 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0687 21.7998 18.6180 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.2103 REMARK 3 T33: 0.1795 T12: -0.0721 REMARK 3 T13: 0.0229 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.6588 L22: 4.0454 REMARK 3 L33: 4.3668 L12: -2.8036 REMARK 3 L13: -0.2537 L23: 1.7962 REMARK 3 S TENSOR REMARK 3 S11: -0.1035 S12: 0.6135 S13: -0.4305 REMARK 3 S21: -0.1888 S22: 0.1022 S23: 0.2236 REMARK 3 S31: 0.6318 S32: -0.4020 S33: 0.1044 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 311 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7593 36.5695 12.9208 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1186 REMARK 3 T33: 0.1851 T12: -0.0280 REMARK 3 T13: -0.0053 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 1.7328 L22: 0.9106 REMARK 3 L33: 3.5364 L12: 0.3178 REMARK 3 L13: 0.4295 L23: 1.0604 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.2425 S13: 0.4829 REMARK 3 S21: 0.1825 S22: 0.0016 S23: -0.0916 REMARK 3 S31: -0.6900 S32: 0.0593 S33: -0.1351 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 320 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1728 29.9567 14.6244 REMARK 3 T TENSOR REMARK 3 T11: 0.1302 T22: 0.1016 REMARK 3 T33: 0.1471 T12: 0.0045 REMARK 3 T13: 0.0192 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.8722 L22: 0.6964 REMARK 3 L33: 4.8756 L12: 0.1329 REMARK 3 L13: -0.3114 L23: 0.2365 REMARK 3 S TENSOR REMARK 3 S11: 0.0683 S12: 0.1604 S13: 0.0470 REMARK 3 S21: 0.0996 S22: -0.0649 S23: -0.0765 REMARK 3 S31: 0.1971 S32: -0.1166 S33: -0.0544 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: A REMARK 3 SELECTION : B REMARK 3 ATOM PAIRS NUMBER : 158 REMARK 3 RMSD : 0.100 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4IBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21924 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.92700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH5.5, 15% REMARK 280 PEG3350, 10%DMSO, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.78100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.29800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.74250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.29800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.78100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.74250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 212 REMARK 465 HIS A 213 REMARK 465 MET A 214 REMARK 465 GLY A 215 REMARK 465 LYS A 216 REMARK 465 PRO A 217 REMARK 465 GLY B 212 REMARK 465 HIS B 213 REMARK 465 MET B 214 REMARK 465 GLY B 215 REMARK 465 LYS B 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 549 O HOH B 604 2.06 REMARK 500 O HOH A 560 O HOH A 591 2.11 REMARK 500 O HOH B 504 O HOH B 604 2.12 REMARK 500 O HOH A 555 O HOH A 559 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 579 O HOH B 506 2464 2.03 REMARK 500 O HOH A 581 O HOH B 556 2464 2.07 REMARK 500 O HOH A 585 O HOH A 597 2565 2.10 REMARK 500 O HOH A 599 O HOH B 589 2464 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 316 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 316 87.27 -67.52 REMARK 500 SER A 317 58.27 101.66 REMARK 500 SER A 317 58.27 -142.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 232 O REMARK 620 2 GLY B 234 O 109.9 REMARK 620 3 HOH B 511 O 80.0 88.6 REMARK 620 4 HOH B 582 O 106.4 107.6 158.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1DL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1DL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IBB RELATED DB: PDB REMARK 900 RELATED ID: 4IBC RELATED DB: PDB REMARK 900 RELATED ID: 4IBE RELATED DB: PDB REMARK 900 RELATED ID: 4IBF RELATED DB: PDB REMARK 900 RELATED ID: 4IBG RELATED DB: PDB REMARK 900 RELATED ID: 4IBH RELATED DB: PDB REMARK 900 RELATED ID: 4IBI RELATED DB: PDB REMARK 900 RELATED ID: 4IBJ RELATED DB: PDB REMARK 900 RELATED ID: 4IBK RELATED DB: PDB DBREF 4IBD A 215 340 UNP Q05127 VP35_EBOZM 215 340 DBREF 4IBD B 215 340 UNP Q05127 VP35_EBOZM 215 340 SEQADV 4IBD GLY A 212 UNP Q05127 EXPRESSION TAG SEQADV 4IBD HIS A 213 UNP Q05127 EXPRESSION TAG SEQADV 4IBD MET A 214 UNP Q05127 EXPRESSION TAG SEQADV 4IBD GLY B 212 UNP Q05127 EXPRESSION TAG SEQADV 4IBD HIS B 213 UNP Q05127 EXPRESSION TAG SEQADV 4IBD MET B 214 UNP Q05127 EXPRESSION TAG SEQRES 1 A 129 GLY HIS MET GLY LYS PRO ASP ILE SER ALA LYS ASP LEU SEQRES 2 A 129 ARG ASN ILE MET TYR ASP HIS LEU PRO GLY PHE GLY THR SEQRES 3 A 129 ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS LYS LEU GLY SEQRES 4 A 129 LYS ASP SER ASN SER LEU ASP ILE ILE HIS ALA GLU PHE SEQRES 5 A 129 GLN ALA SER LEU ALA GLU GLY ASP SER PRO GLN CYS ALA SEQRES 6 A 129 LEU ILE GLN ILE THR LYS ARG VAL PRO ILE PHE GLN ASP SEQRES 7 A 129 ALA ALA PRO PRO VAL ILE HIS ILE ARG SER ARG GLY ASP SEQRES 8 A 129 ILE PRO ARG ALA CYS GLN LYS SER LEU ARG PRO VAL PRO SEQRES 9 A 129 PRO SER PRO LYS ILE ASP ARG GLY TRP VAL CYS VAL PHE SEQRES 10 A 129 GLN LEU GLN ASP GLY LYS THR LEU GLY LEU LYS ILE SEQRES 1 B 129 GLY HIS MET GLY LYS PRO ASP ILE SER ALA LYS ASP LEU SEQRES 2 B 129 ARG ASN ILE MET TYR ASP HIS LEU PRO GLY PHE GLY THR SEQRES 3 B 129 ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS LYS LEU GLY SEQRES 4 B 129 LYS ASP SER ASN SER LEU ASP ILE ILE HIS ALA GLU PHE SEQRES 5 B 129 GLN ALA SER LEU ALA GLU GLY ASP SER PRO GLN CYS ALA SEQRES 6 B 129 LEU ILE GLN ILE THR LYS ARG VAL PRO ILE PHE GLN ASP SEQRES 7 B 129 ALA ALA PRO PRO VAL ILE HIS ILE ARG SER ARG GLY ASP SEQRES 8 B 129 ILE PRO ARG ALA CYS GLN LYS SER LEU ARG PRO VAL PRO SEQRES 9 B 129 PRO SER PRO LYS ILE ASP ARG GLY TRP VAL CYS VAL PHE SEQRES 10 B 129 GLN LEU GLN ASP GLY LYS THR LEU GLY LEU LYS ILE HET 1DL A 401 31 HET GOL A 402 6 HET 1DL B 401 31 HET GOL B 402 6 HET MG B 403 1 HETNAM 1DL 5-[(2R)-3-BENZOYL-2-(4-BROMOTHIOPHEN-2-YL)-4-HYDROXY-5- HETNAM 2 1DL OXO-2,5-DIHYDRO-1H-PYRROL-1-YL]-2-METHYLBENZOIC ACID HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 1DL 2(C23 H16 BR N O5 S) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 MG MG 2+ FORMUL 8 HOH *212(H2 O) HELIX 1 1 SER A 220 LEU A 232 1 13 HELIX 2 2 THR A 237 SER A 253 1 17 HELIX 3 3 SER A 255 GLU A 269 1 15 HELIX 4 4 SER A 272 VAL A 284 1 13 HELIX 5 5 PRO A 285 GLN A 288 5 4 HELIX 6 6 SER A 299 ILE A 303 5 5 HELIX 7 7 PRO A 304 LYS A 309 5 6 HELIX 8 8 LYS A 319 ARG A 322 5 4 HELIX 9 9 SER B 220 LEU B 232 1 13 HELIX 10 10 THR B 237 SER B 253 1 17 HELIX 11 11 SER B 255 GLU B 269 1 15 HELIX 12 12 SER B 272 VAL B 284 1 13 HELIX 13 13 SER B 299 ILE B 303 5 5 HELIX 14 14 PRO B 304 LYS B 309 5 6 HELIX 15 15 LYS B 319 ARG B 322 5 4 SHEET 1 A 4 VAL A 294 ILE A 297 0 SHEET 2 A 4 TRP A 324 LEU A 330 1 O VAL A 327 N ILE A 295 SHEET 3 A 4 THR A 335 LYS A 339 -1 O LEU A 336 N PHE A 328 SHEET 4 A 4 LEU A 311 ARG A 312 -1 N ARG A 312 O GLY A 337 SHEET 1 B 4 VAL B 294 ILE B 297 0 SHEET 2 B 4 TRP B 324 LEU B 330 1 O VAL B 327 N ILE B 295 SHEET 3 B 4 THR B 335 LYS B 339 -1 O LEU B 336 N PHE B 328 SHEET 4 B 4 LEU B 311 ARG B 312 -1 N ARG B 312 O GLY B 337 LINK O LEU B 232 MG MG B 403 1555 1555 2.52 LINK O GLY B 234 MG MG B 403 1555 1555 2.30 LINK MG MG B 403 O HOH B 511 1555 1555 2.43 LINK MG MG B 403 O HOH B 582 1555 1555 2.53 SITE 1 AC1 11 ALA A 221 GLN A 241 GLN A 244 LYS A 248 SITE 2 AC1 11 LYS A 251 PRO A 293 ILE A 295 ILE A 297 SITE 3 AC1 11 ARG A 305 HOH A 539 HOH A 603 SITE 1 AC2 6 ASP A 271 SER A 272 CYS A 275 ASP A 332 SITE 2 AC2 6 LYS A 334 ASP B 252 SITE 1 AC3 9 ALA B 221 GLN B 241 GLN B 244 LYS B 248 SITE 2 AC3 9 LYS B 251 PRO B 293 ASP B 302 HOH B 566 SITE 3 AC3 9 HOH B 584 SITE 1 AC4 6 ASP A 252 ASP B 271 SER B 272 CYS B 275 SITE 2 AC4 6 ASP B 332 LYS B 334 SITE 1 AC5 5 LEU B 232 PRO B 233 GLY B 234 HOH B 511 SITE 2 AC5 5 HOH B 582 CRYST1 51.562 65.485 72.596 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013775 0.00000