HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 08-DEC-12 4IBF TITLE EBOLA VIRUS VP35 BOUND TO SMALL MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE COFACTOR VP35; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 215-340; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS; SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 128952; SOURCE 5 STRAIN: MAYINGA-76; SOURCE 6 GENE: VP35; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, INTERFERON INHIBITOR DOMAIN, TRANSCRIPTION- KEYWDS 4 TRANSCRIPTION INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.S.BROWN,D.W.LEUNG,W.XU,D.M.BOREK,Z.OTWINOWSKI,P.RAMANAN,A.J.STUBBS, AUTHOR 2 D.S.PETERSON,J.M.BINNING,G.K.AMARASINGHE,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 5 28-FEB-24 4IBF 1 REMARK SEQADV REVDAT 4 17-JUL-19 4IBF 1 REMARK REVDAT 3 15-NOV-17 4IBF 1 REMARK REVDAT 2 14-MAY-14 4IBF 1 JRNL REVDAT 1 19-MAR-14 4IBF 0 JRNL AUTH C.S.BROWN,M.S.LEE,D.W.LEUNG,T.WANG,W.XU,P.LUTHRA, JRNL AUTH 2 M.ANANTPADMA,R.S.SHABMAN,L.M.MELITO,K.S.MACMILLAN,D.M.BOREK, JRNL AUTH 3 Z.OTWINOWSKI,P.RAMANAN,A.J.STUBBS,D.S.PETERSON,J.M.BINNING, JRNL AUTH 4 M.TONELLI,M.A.OLSON,R.A.DAVEY,J.M.READY,C.F.BASLER, JRNL AUTH 5 G.K.AMARASINGHE JRNL TITL IN SILICO DERIVED SMALL MOLECULES BIND THE FILOVIRUS VP35 JRNL TITL 2 PROTEIN AND INHIBIT ITS POLYMERASE COFACTOR ACTIVITY. JRNL REF J.MOL.BIOL. V. 426 2045 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24495995 JRNL DOI 10.1016/J.JMB.2014.01.010 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 10368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5831 - 3.6353 0.99 2833 132 0.1671 0.2111 REMARK 3 2 3.6353 - 2.8857 1.00 2718 132 0.1802 0.2959 REMARK 3 3 2.8857 - 2.5210 0.93 2510 149 0.2122 0.3197 REMARK 3 4 2.5210 - 2.2905 0.67 1805 89 0.1919 0.2727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2024 REMARK 3 ANGLE : 1.145 2753 REMARK 3 CHIRALITY : 0.061 299 REMARK 3 PLANARITY : 0.005 361 REMARK 3 DIHEDRAL : 17.041 789 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4545 22.7862 -12.1335 REMARK 3 T TENSOR REMARK 3 T11: 0.2508 T22: 0.2659 REMARK 3 T33: 0.3364 T12: -0.0427 REMARK 3 T13: 0.0237 T23: -0.0941 REMARK 3 L TENSOR REMARK 3 L11: 8.9651 L22: 3.6975 REMARK 3 L33: 4.2931 L12: 0.7393 REMARK 3 L13: -3.1545 L23: -0.3264 REMARK 3 S TENSOR REMARK 3 S11: -0.2819 S12: 1.2959 S13: -0.9950 REMARK 3 S21: -0.1022 S22: 0.3451 S23: -0.2852 REMARK 3 S31: 0.4005 S32: -0.6624 S33: -0.0662 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6873 32.2879 -7.4529 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.1936 REMARK 3 T33: 0.2333 T12: 0.0678 REMARK 3 T13: 0.0197 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.1921 L22: 0.0411 REMARK 3 L33: 1.8677 L12: -0.0390 REMARK 3 L13: -0.1889 L23: -0.2844 REMARK 3 S TENSOR REMARK 3 S11: 0.1112 S12: 0.1425 S13: 0.0824 REMARK 3 S21: 0.0826 S22: 0.0087 S23: 0.0397 REMARK 3 S31: -0.3436 S32: -0.1486 S33: -0.0720 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6956 27.8476 8.2891 REMARK 3 T TENSOR REMARK 3 T11: 0.3293 T22: 0.2404 REMARK 3 T33: 0.2309 T12: 0.0106 REMARK 3 T13: 0.0115 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 2.6590 L22: 0.9746 REMARK 3 L33: 2.8495 L12: 0.6709 REMARK 3 L13: -0.1265 L23: -0.5576 REMARK 3 S TENSOR REMARK 3 S11: 0.1005 S12: -0.1125 S13: -0.1921 REMARK 3 S21: 0.3044 S22: -0.1860 S23: 0.0571 REMARK 3 S31: 0.2981 S32: 0.0869 S33: 0.0944 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 218 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3861 22.4690 35.4346 REMARK 3 T TENSOR REMARK 3 T11: 0.2503 T22: 0.3182 REMARK 3 T33: 0.3420 T12: 0.0695 REMARK 3 T13: -0.0004 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 6.1250 L22: 2.2801 REMARK 3 L33: 0.7188 L12: -1.4958 REMARK 3 L13: -0.0266 L23: 0.0403 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: -0.6314 S13: -1.1879 REMARK 3 S21: 0.0034 S22: 0.0238 S23: -0.0978 REMARK 3 S31: 0.7243 S32: 0.6650 S33: 0.0016 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3314 25.6585 27.4594 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.2057 REMARK 3 T33: 0.2042 T12: 0.0158 REMARK 3 T13: -0.0223 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 6.0260 L22: 1.5811 REMARK 3 L33: 2.8949 L12: 0.5125 REMARK 3 L13: -0.7884 L23: 0.3220 REMARK 3 S TENSOR REMARK 3 S11: -0.1988 S12: 0.1096 S13: -0.7250 REMARK 3 S21: 0.0075 S22: 0.1608 S23: -0.1901 REMARK 3 S31: 0.3769 S32: 0.3508 S33: 0.0270 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 253 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0632 33.1964 36.9386 REMARK 3 T TENSOR REMARK 3 T11: 0.2015 T22: 0.3294 REMARK 3 T33: 0.2964 T12: 0.0588 REMARK 3 T13: -0.0262 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 5.2686 L22: 0.9796 REMARK 3 L33: 3.4155 L12: -0.1059 REMARK 3 L13: -2.8976 L23: 1.2144 REMARK 3 S TENSOR REMARK 3 S11: 0.0776 S12: -0.3584 S13: 0.1470 REMARK 3 S21: 0.2944 S22: -0.1994 S23: -0.3634 REMARK 3 S31: 0.1570 S32: 0.0480 S33: 0.0814 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 270 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4251 37.0736 29.4054 REMARK 3 T TENSOR REMARK 3 T11: 0.2606 T22: 0.2879 REMARK 3 T33: 0.3332 T12: 0.0557 REMARK 3 T13: 0.0161 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 2.0175 L22: 0.6010 REMARK 3 L33: 2.6397 L12: -0.1397 REMARK 3 L13: -1.3841 L23: 0.4189 REMARK 3 S TENSOR REMARK 3 S11: 0.4703 S12: -0.2886 S13: 0.5983 REMARK 3 S21: -0.0104 S22: 0.1224 S23: -0.1280 REMARK 3 S31: -0.6038 S32: 0.3686 S33: -0.4070 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0698 21.1057 13.0428 REMARK 3 T TENSOR REMARK 3 T11: 0.3653 T22: 0.4787 REMARK 3 T33: 0.1581 T12: 0.0948 REMARK 3 T13: -0.0857 T23: -0.1306 REMARK 3 L TENSOR REMARK 3 L11: 4.1152 L22: 7.0478 REMARK 3 L33: 2.4138 L12: 4.3621 REMARK 3 L13: 1.2314 L23: 3.2097 REMARK 3 S TENSOR REMARK 3 S11: -0.1016 S12: 0.7190 S13: -0.2910 REMARK 3 S21: -0.5646 S22: 0.1175 S23: 0.1036 REMARK 3 S31: 0.3718 S32: -0.2743 S33: -0.0635 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 300 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0157 22.1866 18.4660 REMARK 3 T TENSOR REMARK 3 T11: 0.4397 T22: 0.3789 REMARK 3 T33: 0.2951 T12: -0.0411 REMARK 3 T13: 0.0774 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.4431 L22: 4.7975 REMARK 3 L33: 2.6136 L12: -0.5782 REMARK 3 L13: 1.4268 L23: 1.7743 REMARK 3 S TENSOR REMARK 3 S11: -0.2155 S12: 0.1175 S13: -0.2002 REMARK 3 S21: 0.0262 S22: 0.4243 S23: -0.2011 REMARK 3 S31: 0.0460 S32: -0.4473 S33: -0.2716 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 311 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3674 35.5669 13.0913 REMARK 3 T TENSOR REMARK 3 T11: 0.4084 T22: 0.2664 REMARK 3 T33: 0.2422 T12: -0.0021 REMARK 3 T13: 0.0672 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 1.7677 L22: 1.7946 REMARK 3 L33: 2.8668 L12: -0.2483 REMARK 3 L13: 1.9696 L23: 0.8122 REMARK 3 S TENSOR REMARK 3 S11: 0.2841 S12: 0.3675 S13: 0.5664 REMARK 3 S21: 0.1280 S22: 0.0872 S23: 0.1520 REMARK 3 S31: -0.6674 S32: -0.0493 S33: -0.3389 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 320 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3615 32.9332 17.7738 REMARK 3 T TENSOR REMARK 3 T11: 0.2238 T22: 0.1441 REMARK 3 T33: 0.3013 T12: 0.0021 REMARK 3 T13: 0.0041 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 4.1016 L22: 1.9315 REMARK 3 L33: 3.8350 L12: 0.7068 REMARK 3 L13: 0.9419 L23: 0.6089 REMARK 3 S TENSOR REMARK 3 S11: -0.0968 S12: -0.3515 S13: 0.3369 REMARK 3 S21: -0.4004 S22: -0.1272 S23: -0.0328 REMARK 3 S31: -0.1837 S32: 0.4213 S33: 0.0482 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 330 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0569 26.5899 11.5977 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.3260 REMARK 3 T33: 0.2705 T12: 0.0460 REMARK 3 T13: 0.0284 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.6617 L22: 1.2827 REMARK 3 L33: 4.0871 L12: 0.0179 REMARK 3 L13: 0.6116 L23: -0.7153 REMARK 3 S TENSOR REMARK 3 S11: 0.3134 S12: 0.5200 S13: 0.1240 REMARK 3 S21: -0.1868 S22: 0.1658 S23: -0.0483 REMARK 3 S31: 0.5686 S32: -0.0403 S33: -0.2744 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4IBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793376 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11548 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH5.5, 15% REMARK 280 PEG3350, 10%DMSO, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.73600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.00450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.97550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.00450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.73600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.97550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 212 REMARK 465 HIS A 213 REMARK 465 MET A 214 REMARK 465 GLY A 215 REMARK 465 LYS A 216 REMARK 465 PRO A 217 REMARK 465 GLY B 212 REMARK 465 HIS B 213 REMARK 465 MET B 214 REMARK 465 GLY B 215 REMARK 465 LYS B 216 REMARK 465 PRO B 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 232 NH1 ARG B 298 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 254 47.31 39.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1D5 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1D5 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IBB RELATED DB: PDB REMARK 900 RELATED ID: 4IBC RELATED DB: PDB REMARK 900 RELATED ID: 4IBD RELATED DB: PDB REMARK 900 RELATED ID: 4IBE RELATED DB: PDB REMARK 900 RELATED ID: 4IBG RELATED DB: PDB REMARK 900 RELATED ID: 4IBH RELATED DB: PDB REMARK 900 RELATED ID: 4IBI RELATED DB: PDB REMARK 900 RELATED ID: 4IBK RELATED DB: PDB DBREF 4IBF A 215 340 UNP Q05127 VP35_EBOZM 215 340 DBREF 4IBF B 215 340 UNP Q05127 VP35_EBOZM 215 340 SEQADV 4IBF GLY A 212 UNP Q05127 EXPRESSION TAG SEQADV 4IBF HIS A 213 UNP Q05127 EXPRESSION TAG SEQADV 4IBF MET A 214 UNP Q05127 EXPRESSION TAG SEQADV 4IBF GLY B 212 UNP Q05127 EXPRESSION TAG SEQADV 4IBF HIS B 213 UNP Q05127 EXPRESSION TAG SEQADV 4IBF MET B 214 UNP Q05127 EXPRESSION TAG SEQRES 1 A 129 GLY HIS MET GLY LYS PRO ASP ILE SER ALA LYS ASP LEU SEQRES 2 A 129 ARG ASN ILE MET TYR ASP HIS LEU PRO GLY PHE GLY THR SEQRES 3 A 129 ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS LYS LEU GLY SEQRES 4 A 129 LYS ASP SER ASN SER LEU ASP ILE ILE HIS ALA GLU PHE SEQRES 5 A 129 GLN ALA SER LEU ALA GLU GLY ASP SER PRO GLN CYS ALA SEQRES 6 A 129 LEU ILE GLN ILE THR LYS ARG VAL PRO ILE PHE GLN ASP SEQRES 7 A 129 ALA ALA PRO PRO VAL ILE HIS ILE ARG SER ARG GLY ASP SEQRES 8 A 129 ILE PRO ARG ALA CYS GLN LYS SER LEU ARG PRO VAL PRO SEQRES 9 A 129 PRO SER PRO LYS ILE ASP ARG GLY TRP VAL CYS VAL PHE SEQRES 10 A 129 GLN LEU GLN ASP GLY LYS THR LEU GLY LEU LYS ILE SEQRES 1 B 129 GLY HIS MET GLY LYS PRO ASP ILE SER ALA LYS ASP LEU SEQRES 2 B 129 ARG ASN ILE MET TYR ASP HIS LEU PRO GLY PHE GLY THR SEQRES 3 B 129 ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS LYS LEU GLY SEQRES 4 B 129 LYS ASP SER ASN SER LEU ASP ILE ILE HIS ALA GLU PHE SEQRES 5 B 129 GLN ALA SER LEU ALA GLU GLY ASP SER PRO GLN CYS ALA SEQRES 6 B 129 LEU ILE GLN ILE THR LYS ARG VAL PRO ILE PHE GLN ASP SEQRES 7 B 129 ALA ALA PRO PRO VAL ILE HIS ILE ARG SER ARG GLY ASP SEQRES 8 B 129 ILE PRO ARG ALA CYS GLN LYS SER LEU ARG PRO VAL PRO SEQRES 9 B 129 PRO SER PRO LYS ILE ASP ARG GLY TRP VAL CYS VAL PHE SEQRES 10 B 129 GLN LEU GLN ASP GLY LYS THR LEU GLY LEU LYS ILE HET 1D5 A 401 31 HET 1D5 B 401 31 HETNAM 1D5 (4-{(2R)-2-(4-BROMOTHIOPHEN-2-YL)-3-[(5-CHLOROTHIOPHEN- HETNAM 2 1D5 2-YL)CARBONYL]-4-HYDROXY-5-OXO-2,5-DIHYDRO-1H-PYRROL- HETNAM 3 1D5 1-YL}PHENYL)ACETIC ACID FORMUL 3 1D5 2(C21 H13 BR CL N O5 S2) FORMUL 5 HOH *93(H2 O) HELIX 1 1 SER A 220 LEU A 232 1 13 HELIX 2 2 THR A 237 SER A 253 1 17 HELIX 3 3 SER A 255 GLY A 270 1 16 HELIX 4 4 SER A 272 VAL A 284 1 13 HELIX 5 5 SER A 299 ILE A 303 5 5 HELIX 6 6 PRO A 304 LYS A 309 5 6 HELIX 7 7 LYS A 319 ARG A 322 5 4 HELIX 8 8 SER B 220 ASP B 230 1 11 HELIX 9 9 THR B 237 SER B 253 1 17 HELIX 10 10 SER B 255 GLY B 270 1 16 HELIX 11 11 SER B 272 VAL B 284 1 13 HELIX 12 12 SER B 299 ILE B 303 5 5 HELIX 13 13 PRO B 304 LYS B 309 5 6 HELIX 14 14 LYS B 319 ARG B 322 5 4 SHEET 1 A 4 VAL A 294 ILE A 297 0 SHEET 2 A 4 TRP A 324 LEU A 330 1 O VAL A 327 N ILE A 295 SHEET 3 A 4 THR A 335 LYS A 339 -1 O LEU A 336 N PHE A 328 SHEET 4 A 4 LEU A 311 ARG A 312 -1 N ARG A 312 O GLY A 337 SHEET 1 B 4 VAL B 294 HIS B 296 0 SHEET 2 B 4 TRP B 324 GLN B 329 1 O VAL B 327 N ILE B 295 SHEET 3 B 4 THR B 335 LYS B 339 -1 O LEU B 336 N PHE B 328 SHEET 4 B 4 LEU B 311 ARG B 312 -1 N ARG B 312 O GLY B 337 SITE 1 AC1 8 ALA A 221 GLN A 241 GLN A 244 LYS A 248 SITE 2 AC1 8 LYS A 251 PRO A 293 ASP A 302 ARG A 305 SITE 1 AC2 7 ALA B 221 GLN B 241 GLN B 244 LYS B 248 SITE 2 AC2 7 LYS B 251 PRO B 293 ASP B 302 CRYST1 51.472 65.951 72.009 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019428 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013887 0.00000