HEADER DNA BINDING PROTEIN/DNA 09-DEC-12 4IBV TITLE HUMAN P53 CORE DOMAIN WITH HOT SPOT MUTATION R273C AND SECOND-SITE TITLE 2 SUPPRESSOR MUTATION S240R IN SEQUENCE-SPECIFIC COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 SYNONYM: ANTIGEN NY-CO-13, PHOSPHOPROTEIN P53, TUMOR SUPPRESSOR P53; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: P53, TP53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-27-B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS METAL-BINDING, LOOP-SHEET-HELIX MOTIF, TRANSCRIPTION, ACTIVATOR, KEYWDS 2 ANTI-ONCOGENE, APOPTOSIS, CELL CYCLE, DISEASE MUTATION, RESCUE KEYWDS 3 MUTATION, TUMOR SUPPRESSOR, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.ELDAR,H.ROZENBERG,Y.DISKIN-POSNER,Z.SHAKKED REVDAT 4 20-SEP-23 4IBV 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4IBV 1 REMARK REVDAT 2 23-OCT-13 4IBV 1 JRNL REVDAT 1 14-AUG-13 4IBV 0 JRNL AUTH A.ELDAR,H.ROZENBERG,Y.DISKIN-POSNER,R.ROHS,Z.SHAKKED JRNL TITL STRUCTURAL STUDIES OF P53 INACTIVATION BY DNA-CONTACT JRNL TITL 2 MUTATIONS AND ITS RESCUE BY SUPPRESSOR MUTATIONS VIA JRNL TITL 3 ALTERNATIVE PROTEIN-DNA INTERACTIONS. JRNL REF NUCLEIC ACIDS RES. V. 41 8748 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23863845 JRNL DOI 10.1093/NAR/GKT630 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1405 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 13262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2472 - 3.5839 0.99 2670 129 0.1415 0.2031 REMARK 3 2 3.5839 - 2.8448 0.99 2591 138 0.1604 0.2253 REMARK 3 3 2.8448 - 2.4852 0.99 2581 143 0.1839 0.2552 REMARK 3 4 2.4852 - 2.2580 0.97 2460 156 0.1786 0.2581 REMARK 3 5 2.2580 - 2.1000 0.87 2293 101 0.1808 0.2416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1947 REMARK 3 ANGLE : 1.210 2674 REMARK 3 CHIRALITY : 0.078 284 REMARK 3 PLANARITY : 0.006 315 REMARK 3 DIHEDRAL : 18.445 771 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 94:176) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3767 25.6079 -2.3676 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1111 REMARK 3 T33: 0.1951 T12: -0.0215 REMARK 3 T13: -0.0482 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 2.9767 L22: 2.2381 REMARK 3 L33: 0.8200 L12: -1.3751 REMARK 3 L13: 0.5526 L23: -0.0615 REMARK 3 S TENSOR REMARK 3 S11: -0.1187 S12: 0.1088 S13: 0.4307 REMARK 3 S21: 0.1479 S22: -0.1087 S23: -0.5258 REMARK 3 S31: -0.1170 S32: 0.0083 S33: 0.1585 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 177:194) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4378 14.6569 -5.0018 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2567 REMARK 3 T33: 0.2000 T12: -0.0533 REMARK 3 T13: 0.0365 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 5.3704 L22: 5.5512 REMARK 3 L33: 2.4400 L12: -4.0558 REMARK 3 L13: -1.6458 L23: -0.0730 REMARK 3 S TENSOR REMARK 3 S11: -0.1224 S12: 0.5668 S13: -1.1194 REMARK 3 S21: -0.1411 S22: -0.0810 S23: 0.5387 REMARK 3 S31: 0.1850 S32: -0.5748 S33: 0.3273 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 195:277) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1358 19.3778 -4.4248 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.0986 REMARK 3 T33: 0.0598 T12: 0.0034 REMARK 3 T13: 0.0189 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 3.5249 L22: 3.2864 REMARK 3 L33: 1.9552 L12: -1.4821 REMARK 3 L13: 1.0769 L23: -0.0491 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.2402 S13: 0.0414 REMARK 3 S21: 0.0028 S22: -0.1132 S23: -0.1962 REMARK 3 S31: 0.0274 S32: 0.0436 S33: 0.0894 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 278:293) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2072 44.0953 -1.2346 REMARK 3 T TENSOR REMARK 3 T11: 0.2927 T22: 0.1374 REMARK 3 T33: 0.4119 T12: 0.0154 REMARK 3 T13: -0.0888 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 7.6206 L22: 3.5404 REMARK 3 L33: 5.9927 L12: 1.6681 REMARK 3 L13: 2.5955 L23: 4.3642 REMARK 3 S TENSOR REMARK 3 S11: 0.0419 S12: -0.5907 S13: 0.9941 REMARK 3 S21: -0.1285 S22: -0.1361 S23: -0.0898 REMARK 3 S31: -0.4998 S32: -0.3605 S33: 0.1235 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 1:11) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5000 40.1717 0.5263 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.2587 REMARK 3 T33: 0.1554 T12: 0.0175 REMARK 3 T13: 0.0005 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 0.3616 L22: 0.1298 REMARK 3 L33: 6.5309 L12: 0.0838 REMARK 3 L13: 0.2190 L23: 1.2145 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.0434 S13: 0.0751 REMARK 3 S21: 0.1097 S22: 0.1589 S23: -0.0377 REMARK 3 S31: 0.1131 S32: 0.1951 S33: -0.1659 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SILICON (111) REMARK 200 OPTICS : PT COATED SI MIRROR IN REMARK 200 KIRKPATRICK-BAEZ GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13264 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2AC0, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:2.4 PROTEIN/DNA RATIO, 16% PEG 3350, REMARK 280 0.18M NH4F, PH 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.81550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.15100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.81550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.15100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 184 REMARK 465 SER A 185 REMARK 465 ASP A 186 REMARK 465 DG B 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 114 CD1 CD2 REMARK 470 LEU A 188 CD1 CD2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 ASP A 228 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 1 O5' - C5' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DG B 4 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA B 6 O4' - C4' - C3' ANGL. DEV. = -3.3 DEGREES REMARK 500 DC B 11 C1' - O4' - C4' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC B 11 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 223 156.01 -45.36 REMARK 500 VAL A 225 126.51 165.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 308 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 105.6 REMARK 620 3 CYS A 238 SG 108.9 114.1 REMARK 620 4 CYS A 242 SG 114.4 100.6 112.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IBQ RELATED DB: PDB REMARK 900 RELATED ID: 4IBS RELATED DB: PDB REMARK 900 RELATED ID: 4IBT RELATED DB: PDB REMARK 900 RELATED ID: 4IBU RELATED DB: PDB REMARK 900 RELATED ID: 4IBW RELATED DB: PDB REMARK 900 RELATED ID: 4IBY RELATED DB: PDB REMARK 900 RELATED ID: 4IBZ RELATED DB: PDB REMARK 900 RELATED ID: 4IJT RELATED DB: PDB DBREF 4IBV A 94 293 UNP P04637 P53_HUMAN 94 293 DBREF 4IBV B 1 12 PDB 4IBV 4IBV 1 12 SEQADV 4IBV ARG A 240 UNP P04637 SER 240 ENGINEERED MUTATION SEQADV 4IBV CYS A 273 UNP P04637 ARG 273 ENGINEERED MUTATION SEQRES 1 A 200 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 A 200 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 A 200 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 A 200 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 A 200 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 A 200 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 A 200 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 A 200 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 A 200 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 A 200 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 A 200 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 A 200 MET CYS ASN ARG SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 A 200 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 A 200 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL CYS VAL CYS SEQRES 15 A 200 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 A 200 LEU ARG LYS LYS GLY SEQRES 1 B 12 DC DG DG DG DC DA DT DG DC DC DC DG HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 8 HET EDO A 304 4 HET EDO A 305 8 HET EDO A 306 4 HET EDO A 307 4 HET ZN A 308 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 7(C2 H6 O2) FORMUL 10 ZN ZN 2+ FORMUL 11 HOH *164(H2 O) HELIX 1 1 CYS A 176 CYS A 182 1 7 HELIX 2 2 CYS A 277 GLY A 293 1 17 SHEET 1 A 4 ARG A 110 GLY A 112 0 SHEET 2 A 4 THR A 140 TRP A 146 -1 O TRP A 146 N ARG A 110 SHEET 3 A 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 A 4 ILE A 195 GLU A 198 -1 N ARG A 196 O ASN A 235 SHEET 1 B 7 CYS A 124 SER A 127 0 SHEET 2 B 7 LYS A 132 CYS A 135 -1 O LYS A 132 N SER A 127 SHEET 3 B 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 B 7 ILE A 251 GLU A 258 -1 N LEU A 257 O LEU A 265 SHEET 5 B 7 ARG A 156 TYR A 163 -1 N ARG A 156 O GLU A 258 SHEET 6 B 7 HIS A 214 PRO A 219 -1 O VAL A 218 N VAL A 157 SHEET 7 B 7 GLU A 204 ASP A 207 -1 N GLU A 204 O VAL A 217 LINK SG CYS A 176 ZN ZN A 308 1555 1555 2.28 LINK ND1 HIS A 179 ZN ZN A 308 1555 1555 2.09 LINK SG CYS A 238 ZN ZN A 308 1555 1555 2.39 LINK SG CYS A 242 ZN ZN A 308 1555 1555 2.30 SITE 1 AC1 5 PRO A 177 HIS A 178 ARG A 181 CYS A 182 SITE 2 AC1 5 GLY A 244 SITE 1 AC2 9 THR A 140 SER A 166 GLN A 167 HIS A 168 SITE 2 AC2 9 MET A 169 THR A 170 GLU A 171 GLU A 198 SITE 3 AC2 9 HOH A 482 SITE 1 AC3 7 ASN A 131 PRO A 152 ASP A 259 SER A 260 SITE 2 AC3 7 SER A 261 HOH A 405 HOH A 484 SITE 1 AC4 7 GLY A 154 THR A 155 ARG A 156 PRO A 219 SITE 2 AC4 7 EDO A 305 EDO A 306 HOH A 426 SITE 1 AC5 5 LYS A 101 THR A 102 GLY A 154 SER A 260 SITE 2 AC5 5 EDO A 304 SITE 1 AC6 8 PRO A 151 PRO A 152 PRO A 153 THR A 155 SITE 2 AC6 8 TYR A 220 PRO A 222 EDO A 304 HOH A 498 SITE 1 AC7 4 GLU A 180 ARG A 181 SER A 183 PRO A 191 SITE 1 AC8 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 CRYST1 137.631 50.302 34.008 90.00 93.46 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007266 0.000000 0.000439 0.00000 SCALE2 0.000000 0.019880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029459 0.00000