HEADER OXIDOREDUCTASE 12-DEC-12 4ID9 TITLE CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASE/REDUCTASE SUPERFAMILY TITLE 2 PROTEIN FROM AGROBACTERIUM TUMEFACIENS (TARGET EFI-506441) WITH BOUND TITLE 3 NAD, MONOCLINIC FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: STR. C58; SOURCE 5 GENE: GALE, ATU5463; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PUTATIVE DEHYDROGENASE, ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL KEYWDS 2 GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,F.GRONINGER-POE,L.L.MORISCO,S.R.WASSERMAN,S.SOJITRA, AUTHOR 2 H.J.IMKER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 20-SEP-23 4ID9 1 REMARK SEQADV REVDAT 1 26-DEC-12 4ID9 0 JRNL AUTH M.W.VETTING,F.GRONINGER-POE,L.L.MORISCO,S.R.WASSERMAN, JRNL AUTH 2 S.SOJITRA,H.J.IMKER,J.A.GERLT,S.C.ALMO, JRNL AUTH 3 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASE/REDUCTASE JRNL TITL 2 SUPERFAMILY PROTEIN FROM AGROBACTERIUM TUMEFACIENS (TARGET JRNL TITL 3 EFI-506441) WITH BOUND NAD, MONOCLINIC FORM 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 94727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2526 - 4.9638 0.96 3009 159 0.1651 0.1709 REMARK 3 2 4.9638 - 3.9429 0.98 3009 160 0.1375 0.1455 REMARK 3 3 3.9429 - 3.4454 0.98 3016 148 0.1506 0.1650 REMARK 3 4 3.4454 - 3.1308 0.98 2970 160 0.1608 0.1886 REMARK 3 5 3.1308 - 2.9066 0.98 2978 147 0.1762 0.2226 REMARK 3 6 2.9066 - 2.7354 0.98 2978 150 0.1842 0.2299 REMARK 3 7 2.7354 - 2.5985 0.98 3017 151 0.1795 0.2017 REMARK 3 8 2.5985 - 2.4854 0.99 2997 157 0.1788 0.2134 REMARK 3 9 2.4854 - 2.3898 0.99 2959 163 0.1809 0.2213 REMARK 3 10 2.3898 - 2.3074 0.99 3056 154 0.1829 0.1974 REMARK 3 11 2.3074 - 2.2352 0.99 2974 170 0.1904 0.2308 REMARK 3 12 2.2352 - 2.1714 0.99 2986 161 0.1837 0.2237 REMARK 3 13 2.1714 - 2.1142 1.00 3022 155 0.1900 0.2500 REMARK 3 14 2.1142 - 2.0627 0.99 2996 190 0.1929 0.2230 REMARK 3 15 2.0627 - 2.0158 1.00 2983 152 0.1927 0.2591 REMARK 3 16 2.0158 - 1.9729 1.00 3036 152 0.2086 0.2343 REMARK 3 17 1.9729 - 1.9334 0.99 3016 146 0.2158 0.2411 REMARK 3 18 1.9334 - 1.8969 0.99 3006 158 0.2144 0.3056 REMARK 3 19 1.8969 - 1.8631 0.99 2955 175 0.2128 0.2446 REMARK 3 20 1.8631 - 1.8315 1.00 3057 159 0.2149 0.2718 REMARK 3 21 1.8315 - 1.8020 1.00 2998 145 0.2082 0.2695 REMARK 3 22 1.8020 - 1.7742 0.99 3016 164 0.2104 0.2509 REMARK 3 23 1.7742 - 1.7482 0.99 2948 162 0.2216 0.2876 REMARK 3 24 1.7482 - 1.7235 1.00 3069 144 0.2199 0.2709 REMARK 3 25 1.7235 - 1.7002 0.99 2980 154 0.2114 0.2599 REMARK 3 26 1.7002 - 1.6782 0.99 2992 162 0.2283 0.2587 REMARK 3 27 1.6782 - 1.6572 0.99 2983 167 0.2304 0.2436 REMARK 3 28 1.6572 - 1.6372 0.99 3007 134 0.2316 0.2731 REMARK 3 29 1.6372 - 1.6182 0.99 2983 169 0.2515 0.2699 REMARK 3 30 1.6182 - 1.6000 0.99 2984 179 0.2605 0.2915 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5347 REMARK 3 ANGLE : 1.078 7276 REMARK 3 CHIRALITY : 0.074 789 REMARK 3 PLANARITY : 0.005 979 REMARK 3 DIHEDRAL : 13.988 1990 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.4018 50.4079 85.8846 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: 0.1149 REMARK 3 T33: 0.1200 T12: 0.0021 REMARK 3 T13: -0.0087 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.2088 L22: 0.2203 REMARK 3 L33: 0.3715 L12: -0.1066 REMARK 3 L13: 0.0056 L23: 0.0912 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: -0.0384 S13: 0.0715 REMARK 3 S21: 0.0412 S22: -0.0081 S23: -0.0397 REMARK 3 S31: -0.1256 S32: 0.0448 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 72:149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.7779 37.5888 76.5704 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.0583 REMARK 3 T33: 0.0672 T12: 0.0093 REMARK 3 T13: 0.0072 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.3130 L22: 0.1874 REMARK 3 L33: 0.6658 L12: 0.1151 REMARK 3 L13: 0.1608 L23: 0.1752 REMARK 3 S TENSOR REMARK 3 S11: -0.0663 S12: 0.0090 S13: -0.0342 REMARK 3 S21: -0.0483 S22: 0.0040 S23: -0.0192 REMARK 3 S31: 0.1111 S32: 0.0258 S33: -0.0024 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 150:321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1103 33.2551 96.6993 REMARK 3 T TENSOR REMARK 3 T11: 0.1541 T22: 0.0879 REMARK 3 T33: 0.0809 T12: 0.0292 REMARK 3 T13: 0.0082 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.5759 L22: 0.0277 REMARK 3 L33: 0.8154 L12: 0.1399 REMARK 3 L13: -0.4326 L23: -0.0636 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.0596 S13: -0.0650 REMARK 3 S21: -0.0296 S22: -0.0131 S23: -0.0224 REMARK 3 S31: 0.1291 S32: 0.0259 S33: -0.0023 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 401:401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3771 47.4821 118.2346 REMARK 3 T TENSOR REMARK 3 T11: 0.3862 T22: 0.0498 REMARK 3 T33: 0.2519 T12: -0.0084 REMARK 3 T13: 0.0693 T23: -0.0827 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0001 L12: 8.9622 REMARK 3 L13: 2.0000 L23: -8.3093 REMARK 3 S TENSOR REMARK 3 S11: -0.1569 S12: 0.0234 S13: -0.9852 REMARK 3 S21: 0.9893 S22: 0.6534 S23: 0.7873 REMARK 3 S31: 0.7056 S32: -0.4316 S33: -0.5345 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 0:71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2582 45.8953 53.2846 REMARK 3 T TENSOR REMARK 3 T11: 0.0982 T22: 0.1112 REMARK 3 T33: 0.1393 T12: -0.0211 REMARK 3 T13: -0.0192 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.1697 L22: 0.3352 REMARK 3 L33: 0.2784 L12: -0.0529 REMARK 3 L13: 0.0721 L23: -0.0763 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: 0.0144 S13: 0.0902 REMARK 3 S21: -0.0741 S22: -0.0715 S23: 0.0434 REMARK 3 S31: -0.0609 S32: -0.0060 S33: -0.0089 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 72:149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7985 36.6127 62.4971 REMARK 3 T TENSOR REMARK 3 T11: 0.1266 T22: 0.0824 REMARK 3 T33: 0.0869 T12: -0.0103 REMARK 3 T13: 0.0049 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.1450 L22: 0.0999 REMARK 3 L33: 0.5878 L12: -0.0439 REMARK 3 L13: 0.2275 L23: 0.2076 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: -0.0266 S13: -0.0287 REMARK 3 S21: 0.0745 S22: 0.0311 S23: 0.0017 REMARK 3 S31: 0.1016 S32: 0.0250 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 150:305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.4502 32.9053 43.6720 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0572 REMARK 3 T33: 0.0943 T12: -0.0187 REMARK 3 T13: -0.0060 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.4701 L22: 0.1864 REMARK 3 L33: 0.7279 L12: 0.0438 REMARK 3 L13: -0.2797 L23: 0.0285 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.0618 S13: -0.0184 REMARK 3 S21: 0.0616 S22: -0.0044 S23: -0.0260 REMARK 3 S31: 0.0630 S32: -0.0095 S33: 0.0139 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 306:327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6027 39.1699 26.1327 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1797 REMARK 3 T33: 0.1045 T12: -0.0426 REMARK 3 T13: -0.0027 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.0426 L22: 0.0101 REMARK 3 L33: 0.1102 L12: 0.0118 REMARK 3 L13: -0.0395 L23: 0.0251 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: 0.0226 S13: 0.0664 REMARK 3 S21: -0.1545 S22: 0.1369 S23: 0.1637 REMARK 3 S31: 0.1039 S32: -0.1452 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ID9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94951 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 94.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 3ENK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10MM TRIS PH 7.9, 5 MM NAD, 5 REMARK 280 MM UDP-GAL; RESERVOIR (0.2 M AMMONIUM ACETATE, 0.1 M BIS-TRIS: REMARK 280 HCL PH 6.5, 25% (W/V) PEG 3350); CRYOPROTECTION (0.40 MM REMARK 280 AMMONIUM ACETATE, 0.20 MM BIS-TRIS:HCL PH 6.5, 40% (W/V) PEG REMARK 280 3350, 5 MM NAD, 5 MM UDP-GAL), SITTING DROP VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.21300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 322 REMARK 465 LYS A 323 REMARK 465 GLU A 324 REMARK 465 GLN A 325 REMARK 465 ARG A 326 REMARK 465 ARG A 327 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 116 O HOH A 689 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 83 -64.37 -100.41 REMARK 500 SER A 105 -160.39 -102.71 REMARK 500 ARG A 114 69.49 -152.65 REMARK 500 TYR A 286 103.55 -160.17 REMARK 500 VAL B 83 -66.54 -98.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ALA A 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-506441 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4IDG RELATED DB: PDB DBREF 4ID9 A 1 327 UNP A9CL58 A9CL58_AGRT5 1 327 DBREF 4ID9 B 1 327 UNP A9CL58 A9CL58_AGRT5 1 327 SEQADV 4ID9 MET A -19 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 GLY A -18 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 SER A -17 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 SER A -16 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS A -15 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS A -14 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS A -13 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS A -12 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS A -11 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS A -10 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 SER A -9 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 SER A -8 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 GLY A -7 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 LEU A -6 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 VAL A -5 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 PRO A -4 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 ARG A -3 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 GLY A -2 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 SER A -1 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS A 0 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 MET B -19 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 GLY B -18 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 SER B -17 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 SER B -16 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS B -15 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS B -14 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS B -13 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS B -12 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS B -11 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS B -10 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 SER B -9 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 SER B -8 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 GLY B -7 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 LEU B -6 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 VAL B -5 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 PRO B -4 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 ARG B -3 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 GLY B -2 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 SER B -1 UNP A9CL58 EXPRESSION TAG SEQADV 4ID9 HIS B 0 UNP A9CL58 EXPRESSION TAG SEQRES 1 A 347 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 347 LEU VAL PRO ARG GLY SER HIS MET ILE LEU VAL THR GLY SEQRES 3 A 347 SER ALA GLY ARG VAL GLY ARG ALA VAL VAL ALA ALA LEU SEQRES 4 A 347 ARG THR GLN GLY ARG THR VAL ARG GLY PHE ASP LEU ARG SEQRES 5 A 347 PRO SER GLY THR GLY GLY GLU GLU VAL VAL GLY SER LEU SEQRES 6 A 347 GLU ASP GLY GLN ALA LEU SER ASP ALA ILE MET GLY VAL SEQRES 7 A 347 SER ALA VAL LEU HIS LEU GLY ALA PHE MET SER TRP ALA SEQRES 8 A 347 PRO ALA ASP ARG ASP ARG MET PHE ALA VAL ASN VAL GLU SEQRES 9 A 347 GLY THR ARG ARG LEU LEU ASP ALA ALA SER ALA ALA GLY SEQRES 10 A 347 VAL ARG ARG PHE VAL PHE ALA SER SER GLY GLU VAL TYR SEQRES 11 A 347 PRO GLU ASN ARG PRO GLU PHE LEU PRO VAL THR GLU ASP SEQRES 12 A 347 HIS PRO LEU CYS PRO ASN SER PRO TYR GLY LEU THR LYS SEQRES 13 A 347 LEU LEU GLY GLU GLU LEU VAL ARG PHE HIS GLN ARG SER SEQRES 14 A 347 GLY ALA MET GLU THR VAL ILE LEU ARG PHE SER HIS THR SEQRES 15 A 347 GLN ASP ALA THR GLU LEU LEU ASP GLU ASP SER PHE PHE SEQRES 16 A 347 SER GLY PRO ARG PHE PHE LEU ARG PRO ARG ILE HIS GLN SEQRES 17 A 347 GLN GLN ASN PHE GLY ASN ALA ALA ILE ALA GLU LEU LEU SEQRES 18 A 347 GLN SER ARG ASP ILE GLY GLU PRO SER HIS ILE LEU ALA SEQRES 19 A 347 ARG ASN GLU ASN GLY ARG PRO PHE ARG MET HIS ILE THR SEQRES 20 A 347 ASP THR ARG ASP MET VAL ALA GLY ILE LEU LEU ALA LEU SEQRES 21 A 347 ASP HIS PRO GLU ALA ALA GLY GLY THR PHE ASN LEU GLY SEQRES 22 A 347 ALA ASP GLU PRO ALA ASP PHE ALA ALA LEU LEU PRO LYS SEQRES 23 A 347 ILE ALA ALA LEU THR GLY LEU PRO ILE VAL THR VAL ASP SEQRES 24 A 347 PHE PRO GLY ASP GLY VAL TYR TYR HIS THR SER ASN GLU SEQRES 25 A 347 ARG ILE ARG ASN THR LEU GLY PHE GLU ALA GLU TRP THR SEQRES 26 A 347 MET ASP ARG MET LEU GLU GLU ALA ALA THR ALA ARG ARG SEQRES 27 A 347 GLN ARG LEU ALA LYS GLU GLN ARG ARG SEQRES 1 B 347 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 347 LEU VAL PRO ARG GLY SER HIS MET ILE LEU VAL THR GLY SEQRES 3 B 347 SER ALA GLY ARG VAL GLY ARG ALA VAL VAL ALA ALA LEU SEQRES 4 B 347 ARG THR GLN GLY ARG THR VAL ARG GLY PHE ASP LEU ARG SEQRES 5 B 347 PRO SER GLY THR GLY GLY GLU GLU VAL VAL GLY SER LEU SEQRES 6 B 347 GLU ASP GLY GLN ALA LEU SER ASP ALA ILE MET GLY VAL SEQRES 7 B 347 SER ALA VAL LEU HIS LEU GLY ALA PHE MET SER TRP ALA SEQRES 8 B 347 PRO ALA ASP ARG ASP ARG MET PHE ALA VAL ASN VAL GLU SEQRES 9 B 347 GLY THR ARG ARG LEU LEU ASP ALA ALA SER ALA ALA GLY SEQRES 10 B 347 VAL ARG ARG PHE VAL PHE ALA SER SER GLY GLU VAL TYR SEQRES 11 B 347 PRO GLU ASN ARG PRO GLU PHE LEU PRO VAL THR GLU ASP SEQRES 12 B 347 HIS PRO LEU CYS PRO ASN SER PRO TYR GLY LEU THR LYS SEQRES 13 B 347 LEU LEU GLY GLU GLU LEU VAL ARG PHE HIS GLN ARG SER SEQRES 14 B 347 GLY ALA MET GLU THR VAL ILE LEU ARG PHE SER HIS THR SEQRES 15 B 347 GLN ASP ALA THR GLU LEU LEU ASP GLU ASP SER PHE PHE SEQRES 16 B 347 SER GLY PRO ARG PHE PHE LEU ARG PRO ARG ILE HIS GLN SEQRES 17 B 347 GLN GLN ASN PHE GLY ASN ALA ALA ILE ALA GLU LEU LEU SEQRES 18 B 347 GLN SER ARG ASP ILE GLY GLU PRO SER HIS ILE LEU ALA SEQRES 19 B 347 ARG ASN GLU ASN GLY ARG PRO PHE ARG MET HIS ILE THR SEQRES 20 B 347 ASP THR ARG ASP MET VAL ALA GLY ILE LEU LEU ALA LEU SEQRES 21 B 347 ASP HIS PRO GLU ALA ALA GLY GLY THR PHE ASN LEU GLY SEQRES 22 B 347 ALA ASP GLU PRO ALA ASP PHE ALA ALA LEU LEU PRO LYS SEQRES 23 B 347 ILE ALA ALA LEU THR GLY LEU PRO ILE VAL THR VAL ASP SEQRES 24 B 347 PHE PRO GLY ASP GLY VAL TYR TYR HIS THR SER ASN GLU SEQRES 25 B 347 ARG ILE ARG ASN THR LEU GLY PHE GLU ALA GLU TRP THR SEQRES 26 B 347 MET ASP ARG MET LEU GLU GLU ALA ALA THR ALA ARG ARG SEQRES 27 B 347 GLN ARG LEU ALA LYS GLU GLN ARG ARG HET ALA A 401 5 HET CL A 402 1 HET NAD A 403 44 HET CL B 401 1 HET NAD B 402 44 HETNAM ALA ALANINE HETNAM CL CHLORIDE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 ALA C3 H7 N O2 FORMUL 4 CL 2(CL 1-) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 8 HOH *827(H2 O) HELIX 1 1 GLY A 9 GLN A 22 1 14 HELIX 2 2 ASP A 47 MET A 56 1 10 HELIX 3 3 ALA A 71 ALA A 73 5 3 HELIX 4 4 ASP A 74 VAL A 83 1 10 HELIX 5 5 VAL A 83 ALA A 96 1 14 HELIX 6 6 GLU A 108 TYR A 110 5 3 HELIX 7 7 SER A 130 GLY A 150 1 21 HELIX 8 8 ASP A 164 ASP A 170 5 7 HELIX 9 9 PHE A 175 PHE A 181 1 7 HELIX 10 10 PHE A 181 GLY A 193 1 13 HELIX 11 11 ASN A 194 ASP A 205 1 12 HELIX 12 12 THR A 229 HIS A 242 1 14 HELIX 13 13 PRO A 243 ALA A 246 5 4 HELIX 14 14 PHE A 260 GLY A 272 1 13 HELIX 15 15 ASN A 291 GLY A 299 1 9 HELIX 16 16 THR A 305 LEU A 321 1 17 HELIX 17 17 GLY B 9 GLN B 22 1 14 HELIX 18 18 ASP B 47 MET B 56 1 10 HELIX 19 19 ALA B 71 ALA B 73 5 3 HELIX 20 20 ASP B 74 VAL B 83 1 10 HELIX 21 21 VAL B 83 ALA B 96 1 14 HELIX 22 22 GLU B 108 TYR B 110 5 3 HELIX 23 23 SER B 130 GLY B 150 1 21 HELIX 24 24 ASP B 164 LEU B 168 5 5 HELIX 25 25 PHE B 175 PHE B 181 1 7 HELIX 26 26 PHE B 181 PHE B 192 1 12 HELIX 27 27 ASN B 194 ARG B 204 1 11 HELIX 28 28 THR B 229 HIS B 242 1 14 HELIX 29 29 PRO B 243 ALA B 246 5 4 HELIX 30 30 PHE B 260 GLY B 272 1 13 HELIX 31 31 ASN B 291 GLY B 299 1 9 HELIX 32 32 THR B 305 ARG B 326 1 22 SHEET 1 A 7 GLU A 40 VAL A 42 0 SHEET 2 A 7 VAL A 26 ASP A 30 1 N GLY A 28 O VAL A 41 SHEET 3 A 7 ILE A 2 THR A 5 1 N ILE A 2 O ARG A 27 SHEET 4 A 7 ALA A 60 HIS A 63 1 O LEU A 62 N LEU A 3 SHEET 5 A 7 ARG A 100 SER A 106 1 O VAL A 102 N HIS A 63 SHEET 6 A 7 GLU A 153 PHE A 159 1 O LEU A 157 N SER A 105 SHEET 7 A 7 GLY A 248 LEU A 252 1 O PHE A 250 N ILE A 156 SHEET 1 B 2 HIS A 161 GLN A 163 0 SHEET 2 B 2 ILE A 226 ASP A 228 1 O THR A 227 N HIS A 161 SHEET 1 C 2 HIS A 211 ARG A 215 0 SHEET 2 C 2 ILE A 275 ASP A 279 1 O VAL A 278 N ARG A 215 SHEET 1 D 2 ARG A 223 MET A 224 0 SHEET 2 D 2 ALA A 258 ASP A 259 -1 O ALA A 258 N MET A 224 SHEET 1 E 7 GLU B 40 VAL B 42 0 SHEET 2 E 7 VAL B 26 ASP B 30 1 N GLY B 28 O VAL B 41 SHEET 3 E 7 ILE B 2 THR B 5 1 N ILE B 2 O ARG B 27 SHEET 4 E 7 ALA B 60 HIS B 63 1 O LEU B 62 N LEU B 3 SHEET 5 E 7 ARG B 100 SER B 106 1 O VAL B 102 N HIS B 63 SHEET 6 E 7 GLU B 153 PHE B 159 1 O LEU B 157 N SER B 105 SHEET 7 E 7 GLY B 248 LEU B 252 1 O PHE B 250 N ILE B 156 SHEET 1 F 2 HIS B 161 GLN B 163 0 SHEET 2 F 2 ILE B 226 ASP B 228 1 O THR B 227 N HIS B 161 SHEET 1 G 2 HIS B 211 ARG B 215 0 SHEET 2 G 2 ILE B 275 ASP B 279 1 O VAL B 278 N ARG B 215 SHEET 1 H 2 ARG B 223 MET B 224 0 SHEET 2 H 2 ALA B 258 ASP B 259 -1 O ALA B 258 N MET B 224 CISPEP 1 TYR A 110 PRO A 111 0 0.85 CISPEP 2 LEU A 118 PRO A 119 0 -5.46 CISPEP 3 TYR B 110 PRO B 111 0 1.36 CISPEP 4 LEU B 118 PRO B 119 0 -1.84 SITE 1 AC1 5 ARG A 318 GLN A 319 ARG A 320 LEU A 321 SITE 2 AC1 5 PRO B 209 SITE 1 AC2 4 ARG A 179 ARG A 185 PHE A 222 HOH A 739 SITE 1 AC3 28 ALA A 8 GLY A 9 ARG A 10 VAL A 11 SITE 2 AC3 28 ASP A 30 LEU A 31 ARG A 32 GLY A 43 SITE 3 AC3 28 SER A 44 LEU A 45 LEU A 64 GLY A 65 SITE 4 AC3 28 ALA A 66 ARG A 77 VAL A 81 SER A 105 SITE 5 AC3 28 SER A 106 TYR A 132 LYS A 136 PHE A 159 SITE 6 AC3 28 SER A 160 HIS A 161 THR A 162 HOH A 541 SITE 7 AC3 28 HOH A 649 HOH A 678 HOH A 833 HOH A 840 SITE 1 AC4 4 ARG B 179 ARG B 185 PHE B 222 HOH B 629 SITE 1 AC5 27 ALA B 8 GLY B 9 ARG B 10 VAL B 11 SITE 2 AC5 27 ASP B 30 LEU B 31 ARG B 32 GLY B 43 SITE 3 AC5 27 SER B 44 LEU B 45 LEU B 64 GLY B 65 SITE 4 AC5 27 ALA B 66 VAL B 81 SER B 105 TYR B 132 SITE 5 AC5 27 LYS B 136 PHE B 159 SER B 160 HIS B 161 SITE 6 AC5 27 THR B 162 HOH B 636 HOH B 749 HOH B 789 SITE 7 AC5 27 HOH B 876 HOH B 879 HOH B 929 CRYST1 52.356 74.426 95.341 90.00 97.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019100 0.000000 0.002379 0.00000 SCALE2 0.000000 0.013436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010570 0.00000