HEADER OXIDOREDUCTASE 12-DEC-12 4IDB TITLE STRUCTURE OF THE FRAGARIA X ANANASSA ENONE OXIDOREDUCTASE IN COMPLEX TITLE 2 WITH NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIPENING-INDUCED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 17-336; COMPND 5 SYNONYM: FAEO; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRAGARIA VESCA; SOURCE 3 ORGANISM_COMMON: WOODLAND STRAWBERRY; SOURCE 4 ORGANISM_TAXID: 57918; SOURCE 5 GENE: GENE28406; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM83; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PASK-IBA5PLUS KEYWDS MEDIUM CHAIN DEHYDROGENASE/REDUCTASE FAMILY, ZINC-INDEPENDENT, KEYWDS 2 ROSSMANN FOLD, ENONE OXIDOREDUCTASE, FURANEOL, HYDRIDE TRANSFER, KEYWDS 3 NADPH, NADH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHIEFNER,A.SKERRA REVDAT 3 08-NOV-23 4IDB 1 REMARK SEQADV REVDAT 2 05-MAR-14 4IDB 1 JRNL REVDAT 1 17-APR-13 4IDB 0 JRNL AUTH A.SCHIEFNER,Q.SINZ,I.NEUMAIER,W.SCHWAB,A.SKERRA JRNL TITL STRUCTURAL BASIS FOR THE ENZYMATIC FORMATION OF THE KEY JRNL TITL 2 STRAWBERRY FLAVOR COMPOUND JRNL TITL 3 4-HYDROXY-2,5-DIMETHYL-3(2H)-FURANONE JRNL REF J.BIOL.CHEM. V. 288 16815 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23589283 JRNL DOI 10.1074/JBC.M113.453852 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 64320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1953 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2405 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 446 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.912 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2560 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2504 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3499 ; 1.956 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5810 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 6.524 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;35.411 ;25.119 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 418 ;11.191 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.683 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 416 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2810 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 493 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 7 REMARK 3 ORIGIN FOR THE GROUP (A): -35.4374 7.0677 28.8364 REMARK 3 T TENSOR REMARK 3 T11: 1.8059 T22: 0.8559 REMARK 3 T33: 0.4699 T12: -0.5442 REMARK 3 T13: 0.1554 T23: 0.1489 REMARK 3 L TENSOR REMARK 3 L11: 23.8813 L22: 3.6266 REMARK 3 L33: 10.2087 L12: -2.2911 REMARK 3 L13: -15.5189 L23: 0.8390 REMARK 3 S TENSOR REMARK 3 S11: 0.5160 S12: -1.2288 S13: 1.0587 REMARK 3 S21: -0.0219 S22: 0.2272 S23: 0.2052 REMARK 3 S31: -0.3480 S32: 0.7767 S33: -0.7432 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): -30.9668 20.1616 12.6175 REMARK 3 T TENSOR REMARK 3 T11: 0.0051 T22: 0.0894 REMARK 3 T33: 0.0212 T12: -0.0077 REMARK 3 T13: -0.0046 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.3824 L22: 2.3376 REMARK 3 L33: 1.5924 L12: -0.5173 REMARK 3 L13: 0.2719 L23: -0.5002 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.1681 S13: 0.0540 REMARK 3 S21: -0.0303 S22: 0.0263 S23: 0.0399 REMARK 3 S31: -0.0414 S32: 0.0354 S33: -0.0446 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): -33.2016 10.7349 -1.3195 REMARK 3 T TENSOR REMARK 3 T11: 0.0969 T22: 0.0462 REMARK 3 T33: 0.0853 T12: 0.0137 REMARK 3 T13: -0.0326 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.4405 L22: 2.2040 REMARK 3 L33: 5.5951 L12: -2.3034 REMARK 3 L13: 2.9992 L23: -3.0467 REMARK 3 S TENSOR REMARK 3 S11: 0.0900 S12: -0.0527 S13: -0.2913 REMARK 3 S21: -0.0889 S22: 0.0487 S23: 0.2390 REMARK 3 S31: 0.2348 S32: 0.0238 S33: -0.1386 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): -28.2453 12.7815 -17.6677 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: 0.1528 REMARK 3 T33: 0.0716 T12: 0.0389 REMARK 3 T13: -0.0039 T23: -0.0507 REMARK 3 L TENSOR REMARK 3 L11: 3.3990 L22: 1.2713 REMARK 3 L33: 2.8810 L12: 0.7712 REMARK 3 L13: 1.0754 L23: 0.2627 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: 0.2512 S13: -0.1109 REMARK 3 S21: -0.2557 S22: 0.0598 S23: -0.1929 REMARK 3 S31: 0.1550 S32: 0.5130 S33: -0.0784 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6264 22.5730 -20.6631 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.1206 REMARK 3 T33: 0.0624 T12: -0.0267 REMARK 3 T13: 0.0035 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.8978 L22: 2.7449 REMARK 3 L33: 8.3925 L12: 0.5476 REMARK 3 L13: 2.5201 L23: 2.2858 REMARK 3 S TENSOR REMARK 3 S11: -0.1333 S12: 0.2951 S13: 0.1861 REMARK 3 S21: -0.4307 S22: 0.2230 S23: -0.2078 REMARK 3 S31: -0.4495 S32: 0.5993 S33: -0.0897 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): -27.3450 14.4737 -0.9903 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.1003 REMARK 3 T33: 0.0428 T12: 0.0131 REMARK 3 T13: 0.0049 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.1554 L22: 0.9031 REMARK 3 L33: 1.4157 L12: -0.5042 REMARK 3 L13: 0.5836 L23: -0.4604 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: 0.0466 S13: -0.0800 REMARK 3 S21: -0.2377 S22: -0.0588 S23: -0.0476 REMARK 3 S31: 0.1543 S32: 0.2115 S33: -0.0182 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4IDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.660 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21-16% (W/V) PEG3350, 0.2M LI2SO4, REMARK 280 0.1M TRIS/HCL PH 7.0-8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.39950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.12900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.12900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.09925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.12900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.12900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.69975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.12900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.12900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.09925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.12900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.12900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.69975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.39950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ALA A -9 REMARK 465 SER A -8 REMARK 465 TRP A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 PRO A -4 REMARK 465 GLN A -3 REMARK 465 PHE A -2 REMARK 465 GLU A -1 REMARK 465 LYS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 281 O HOH A 831 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 103 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 LEU A 266 CB - CG - CD1 ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 33 84.26 -152.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IDA RELATED DB: PDB REMARK 900 RELATED ID: 4IDC RELATED DB: PDB REMARK 900 RELATED ID: 4IDD RELATED DB: PDB REMARK 900 RELATED ID: 4IDE RELATED DB: PDB REMARK 900 RELATED ID: 4IDF RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 NATURAL VARIANT AT THIS POSITION DBREF 4IDB A 2 321 UNP O23939 O23939_FRAVE 17 336 SEQADV 4IDB MET A -10 UNP O23939 EXPRESSION TAG SEQADV 4IDB ALA A -9 UNP O23939 EXPRESSION TAG SEQADV 4IDB SER A -8 UNP O23939 EXPRESSION TAG SEQADV 4IDB TRP A -7 UNP O23939 EXPRESSION TAG SEQADV 4IDB SER A -6 UNP O23939 EXPRESSION TAG SEQADV 4IDB HIS A -5 UNP O23939 EXPRESSION TAG SEQADV 4IDB PRO A -4 UNP O23939 EXPRESSION TAG SEQADV 4IDB GLN A -3 UNP O23939 EXPRESSION TAG SEQADV 4IDB PHE A -2 UNP O23939 EXPRESSION TAG SEQADV 4IDB GLU A -1 UNP O23939 EXPRESSION TAG SEQADV 4IDB LYS A 0 UNP O23939 EXPRESSION TAG SEQADV 4IDB GLY A 1 UNP O23939 EXPRESSION TAG SEQADV 4IDB ASP A 79 UNP O23939 TYR 94 SEE REMARK 999 SEQRES 1 A 332 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 332 ALA ALA PRO SER GLU SER ILE PRO SER VAL ASN LYS ALA SEQRES 3 A 332 TRP VAL TYR SER GLU TYR GLY LYS THR SER ASP VAL LEU SEQRES 4 A 332 LYS PHE ASP PRO SER VAL ALA VAL PRO GLU ILE LYS GLU SEQRES 5 A 332 ASP GLN VAL LEU ILE LYS VAL VAL ALA ALA SER LEU ASN SEQRES 6 A 332 PRO VAL ASP PHE LYS ARG ALA LEU GLY TYR PHE LYS ASP SEQRES 7 A 332 THR ASP SER PRO LEU PRO THR ILE PRO GLY TYR ASP VAL SEQRES 8 A 332 ALA GLY VAL VAL VAL LYS VAL GLY SER GLN VAL THR LYS SEQRES 9 A 332 PHE LYS VAL GLY ASP GLU VAL TYR GLY ASP LEU ASN GLU SEQRES 10 A 332 THR ALA LEU VAL ASN PRO THR ARG PHE GLY SER LEU ALA SEQRES 11 A 332 GLU TYR THR ALA ALA ASP GLU ARG VAL LEU ALA HIS LYS SEQRES 12 A 332 PRO LYS ASN LEU SER PHE ILE GLU ALA ALA SER LEU PRO SEQRES 13 A 332 LEU ALA ILE GLU THR ALA HIS GLU GLY LEU GLU ARG ALA SEQRES 14 A 332 GLU LEU SER ALA GLY LYS SER VAL LEU VAL LEU GLY GLY SEQRES 15 A 332 ALA GLY GLY VAL GLY THR HIS ILE ILE GLN LEU ALA LYS SEQRES 16 A 332 HIS VAL PHE GLY ALA SER LYS VAL ALA ALA THR ALA SER SEQRES 17 A 332 THR LYS LYS LEU ASP LEU LEU ARG THR LEU GLY ALA ASP SEQRES 18 A 332 LEU ALA ILE ASP TYR THR LYS GLU ASN PHE GLU ASP LEU SEQRES 19 A 332 PRO GLU LYS PHE ASP VAL VAL TYR ASP ALA VAL GLY GLU SEQRES 20 A 332 THR ASP LYS ALA VAL LYS ALA VAL LYS GLU GLY GLY LYS SEQRES 21 A 332 VAL VAL THR ILE VAL GLY PRO ALA THR PRO PRO ALA ILE SEQRES 22 A 332 LEU PHE VAL LEU THR SER LYS GLY SER VAL LEU GLU LYS SEQRES 23 A 332 LEU LYS PRO TYR LEU GLU SER GLY LYS VAL LYS PRO VAL SEQRES 24 A 332 LEU ASP PRO THR SER PRO TYR PRO PHE THR LYS VAL VAL SEQRES 25 A 332 GLU ALA PHE GLY TYR LEU GLU SER SER ARG ALA THR GLY SEQRES 26 A 332 LYS VAL VAL VAL TYR PRO ILE HET NAP A 401 48 HET SO4 A 402 5 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 SO4 O4 S 2- FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 HOH *446(H2 O) HELIX 1 1 PRO A 5 ILE A 9 5 5 HELIX 2 2 LYS A 23 LEU A 28 1 6 HELIX 3 3 ASN A 54 LEU A 62 1 9 HELIX 4 4 PHE A 65 ASP A 69 5 5 HELIX 5 5 SER A 137 LEU A 144 1 8 HELIX 6 6 LEU A 144 ALA A 158 1 15 HELIX 7 7 GLY A 173 VAL A 186 1 14 HELIX 8 8 SER A 197 LYS A 199 5 3 HELIX 9 9 LYS A 200 GLY A 208 1 9 HELIX 10 10 ASN A 219 LEU A 223 5 5 HELIX 11 11 GLU A 236 VAL A 241 1 6 HELIX 12 12 LYS A 269 SER A 282 1 14 HELIX 13 13 PRO A 296 THR A 298 5 3 HELIX 14 14 LYS A 299 GLU A 308 1 10 SHEET 1 A 2 VAL A 12 VAL A 17 0 SHEET 2 A 2 LYS A 29 ALA A 35 -1 O VAL A 34 N ASN A 13 SHEET 1 B 5 TYR A 121 ASP A 125 0 SHEET 2 B 5 GLN A 43 SER A 52 -1 N ILE A 46 O THR A 122 SHEET 3 B 5 ASP A 79 VAL A 87 -1 O VAL A 83 N LYS A 47 SHEET 4 B 5 GLU A 99 ASP A 103 -1 O VAL A 100 N GLY A 82 SHEET 5 B 5 LEU A 129 HIS A 131 -1 O ALA A 130 N TYR A 101 SHEET 1 C 3 TYR A 121 ASP A 125 0 SHEET 2 C 3 GLN A 43 SER A 52 -1 N ILE A 46 O THR A 122 SHEET 3 C 3 VAL A 317 VAL A 318 -1 O VAL A 318 N ALA A 51 SHEET 1 D 6 LEU A 211 ASP A 214 0 SHEET 2 D 6 LYS A 191 ALA A 196 1 N ALA A 194 O ILE A 213 SHEET 3 D 6 SER A 165 LEU A 169 1 N VAL A 166 O ALA A 193 SHEET 4 D 6 PHE A 227 ASP A 232 1 O TYR A 231 N LEU A 167 SHEET 5 D 6 VAL A 244 THR A 252 1 O VAL A 251 N ASP A 232 SHEET 6 D 6 ILE A 262 LEU A 263 1 O ILE A 262 N THR A 252 CISPEP 1 LEU A 72 PRO A 73 0 -8.68 CISPEP 2 GLY A 255 PRO A 256 0 -4.04 CISPEP 3 PRO A 259 PRO A 260 0 12.80 CISPEP 4 SER A 293 PRO A 294 0 -2.04 CISPEP 5 TYR A 319 PRO A 320 0 -5.19 SITE 1 AC1 35 PRO A 55 LYS A 59 LEU A 146 THR A 150 SITE 2 AC1 35 GLY A 170 ALA A 172 GLY A 173 GLY A 174 SITE 3 AC1 35 VAL A 175 THR A 195 SER A 197 LYS A 200 SITE 4 AC1 35 TYR A 215 ALA A 233 VAL A 234 ILE A 253 SITE 5 AC1 35 VAL A 254 PHE A 264 VAL A 265 LEU A 266 SITE 6 AC1 35 SER A 310 ARG A 311 ALA A 312 EDO A 405 SITE 7 AC1 35 HOH A 502 HOH A 503 HOH A 504 HOH A 506 SITE 8 AC1 35 HOH A 507 HOH A 508 HOH A 551 HOH A 774 SITE 9 AC1 35 HOH A 803 HOH A 828 HOH A 851 SITE 1 AC2 7 ARG A 127 LYS A 269 SER A 271 HOH A 542 SITE 2 AC2 7 HOH A 767 HOH A 769 HOH A 818 SITE 1 AC3 7 VAL A 49 GLY A 163 SER A 190 ASP A 228 SITE 2 AC3 7 LYS A 245 HOH A 604 HOH A 657 SITE 1 AC4 5 SER A 137 PHE A 138 ILE A 139 HOH A 796 SITE 2 AC4 5 HOH A 820 SITE 1 AC5 2 VAL A 56 NAP A 401 CRYST1 70.258 70.258 174.799 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005721 0.00000