HEADER OXIDOREDUCTASE 12-DEC-12 4IDD TITLE STRUCTURE OF THE FRAGARIA X ANANASSA ENONE OXIDOREDUCTASE IN COMPLEX TITLE 2 WITH NADPH AND EHMF COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIPENING-INDUCED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 17-336; COMPND 5 SYNONYM: FAEO; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRAGARIA VESCA; SOURCE 3 ORGANISM_COMMON: WOODLAND STRAWBERRY; SOURCE 4 ORGANISM_TAXID: 57918; SOURCE 5 GENE: GENE28406; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM83; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PASK-IBA5PLUS KEYWDS MEDIUM CHAIN DEHYDROGENASE/REDUCTASE FAMILY, ZINC-INDEPENDENT, KEYWDS 2 ROSSMANN FOLD, ENONE OXIDOREDUCTASE, FURANEOL, HYDRIDE TRANSFER, KEYWDS 3 NADPH, NADH, EHMF, 2-ETHYL-4-HYDROXY-5-METHYL-3(2H)-FURANONE, KEYWDS 4 HOMOFURANEOL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHIEFNER,A.SKERRA REVDAT 4 08-NOV-23 4IDD 1 REMARK SEQADV REVDAT 3 15-NOV-17 4IDD 1 REMARK REVDAT 2 05-MAR-14 4IDD 1 JRNL REVDAT 1 17-APR-13 4IDD 0 JRNL AUTH A.SCHIEFNER,Q.SINZ,I.NEUMAIER,W.SCHWAB,A.SKERRA JRNL TITL STRUCTURAL BASIS FOR THE ENZYMATIC FORMATION OF THE KEY JRNL TITL 2 STRAWBERRY FLAVOR COMPOUND JRNL TITL 3 4-HYDROXY-2,5-DIMETHYL-3(2H)-FURANONE JRNL REF J.BIOL.CHEM. V. 288 16815 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23589283 JRNL DOI 10.1074/JBC.M113.453852 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 70634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2139 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4963 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2405 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 454 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.667 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2561 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2506 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3503 ; 1.987 ; 2.025 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5818 ; 0.939 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 6.637 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;36.871 ;25.119 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 418 ;11.067 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.588 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2807 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 491 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 7 REMARK 3 ORIGIN FOR THE GROUP (A): -35.5173 7.2652 28.9186 REMARK 3 T TENSOR REMARK 3 T11: 0.8310 T22: 0.6370 REMARK 3 T33: 0.6577 T12: -0.0590 REMARK 3 T13: 0.0014 T23: 0.0800 REMARK 3 L TENSOR REMARK 3 L11: 9.6527 L22: 0.4919 REMARK 3 L33: 2.3284 L12: -2.1625 REMARK 3 L13: -4.7362 L23: 1.0590 REMARK 3 S TENSOR REMARK 3 S11: -0.0878 S12: -0.4509 S13: 0.2246 REMARK 3 S21: 0.0547 S22: 0.1783 S23: 0.0058 REMARK 3 S31: 0.1050 S32: 0.1826 S33: -0.0905 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): -24.5743 24.4495 17.1050 REMARK 3 T TENSOR REMARK 3 T11: 0.0483 T22: 0.2651 REMARK 3 T33: 0.0613 T12: -0.0602 REMARK 3 T13: 0.0038 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: 0.5973 L22: 2.0278 REMARK 3 L33: 2.0321 L12: -0.6045 REMARK 3 L13: 0.9797 L23: -0.4727 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: -0.0699 S13: 0.0620 REMARK 3 S21: 0.2280 S22: 0.0866 S23: -0.1083 REMARK 3 S31: -0.1796 S32: 0.1304 S33: 0.0089 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): -32.7153 16.8950 9.6303 REMARK 3 T TENSOR REMARK 3 T11: 0.0073 T22: 0.0687 REMARK 3 T33: 0.0120 T12: -0.0103 REMARK 3 T13: -0.0093 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.2424 L22: 1.5807 REMARK 3 L33: 1.6673 L12: -0.4794 REMARK 3 L13: 0.1951 L23: -0.2846 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: -0.1016 S13: -0.0585 REMARK 3 S21: -0.0928 S22: 0.0136 S23: 0.1109 REMARK 3 S31: 0.0494 S32: -0.0214 S33: -0.0536 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): -29.5747 13.1492 -16.6279 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.1049 REMARK 3 T33: 0.0323 T12: 0.0298 REMARK 3 T13: -0.0046 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.4511 L22: 1.3529 REMARK 3 L33: 2.5811 L12: 0.0596 REMARK 3 L13: 0.9629 L23: 0.2321 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: 0.2583 S13: -0.1074 REMARK 3 S21: -0.2078 S22: 0.0410 S23: -0.1505 REMARK 3 S31: 0.1397 S32: 0.3780 S33: -0.0758 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): -34.4301 22.5127 -20.7077 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.1095 REMARK 3 T33: 0.0533 T12: -0.0204 REMARK 3 T13: 0.0156 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.9774 L22: 3.0914 REMARK 3 L33: 8.8870 L12: 0.5296 REMARK 3 L13: 2.8513 L23: 2.0830 REMARK 3 S TENSOR REMARK 3 S11: -0.1065 S12: 0.2950 S13: 0.1814 REMARK 3 S21: -0.4510 S22: 0.1934 S23: -0.1911 REMARK 3 S31: -0.4199 S32: 0.5482 S33: -0.0869 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): -27.2533 14.4318 -1.0303 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.0822 REMARK 3 T33: 0.0202 T12: 0.0106 REMARK 3 T13: 0.0067 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.2180 L22: 0.8843 REMARK 3 L33: 1.3429 L12: -0.4580 REMARK 3 L13: 0.5845 L23: -0.3426 REMARK 3 S TENSOR REMARK 3 S11: 0.0708 S12: 0.0508 S13: -0.0877 REMARK 3 S21: -0.1812 S22: -0.0573 S23: -0.0518 REMARK 3 S31: 0.1444 S32: 0.1806 S33: -0.0135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4IDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.070 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21-16% (W/V) PEG 3350, 0.2M LI2SO4, REMARK 280 0.1M TRIS/HCL PH 7.0-8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.37000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.05200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.05200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.05500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.05200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.05200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.68500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.05200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.05200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.05500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.05200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.05200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.68500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ALA A -9 REMARK 465 SER A -8 REMARK 465 TRP A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 PRO A -4 REMARK 465 GLN A -3 REMARK 465 PHE A -2 REMARK 465 GLU A -1 REMARK 465 LYS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 274 CD GLU A 274 OE1 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 69 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 103 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 33 84.84 -152.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2XX A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IDA RELATED DB: PDB REMARK 900 RELATED ID: 4IDB RELATED DB: PDB REMARK 900 RELATED ID: 4IDC RELATED DB: PDB REMARK 900 RELATED ID: 4IDE RELATED DB: PDB REMARK 900 RELATED ID: 4IDF RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 NATURAL VARIANT AT THIS POSITION DBREF 4IDD A 2 321 UNP O23939 O23939_FRAVE 17 336 SEQADV 4IDD MET A -10 UNP O23939 EXPRESSION TAG SEQADV 4IDD ALA A -9 UNP O23939 EXPRESSION TAG SEQADV 4IDD SER A -8 UNP O23939 EXPRESSION TAG SEQADV 4IDD TRP A -7 UNP O23939 EXPRESSION TAG SEQADV 4IDD SER A -6 UNP O23939 EXPRESSION TAG SEQADV 4IDD HIS A -5 UNP O23939 EXPRESSION TAG SEQADV 4IDD PRO A -4 UNP O23939 EXPRESSION TAG SEQADV 4IDD GLN A -3 UNP O23939 EXPRESSION TAG SEQADV 4IDD PHE A -2 UNP O23939 EXPRESSION TAG SEQADV 4IDD GLU A -1 UNP O23939 EXPRESSION TAG SEQADV 4IDD LYS A 0 UNP O23939 EXPRESSION TAG SEQADV 4IDD GLY A 1 UNP O23939 EXPRESSION TAG SEQADV 4IDD ASP A 79 UNP O23939 TYR 94 SEE REMARK 999 SEQRES 1 A 332 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 332 ALA ALA PRO SER GLU SER ILE PRO SER VAL ASN LYS ALA SEQRES 3 A 332 TRP VAL TYR SER GLU TYR GLY LYS THR SER ASP VAL LEU SEQRES 4 A 332 LYS PHE ASP PRO SER VAL ALA VAL PRO GLU ILE LYS GLU SEQRES 5 A 332 ASP GLN VAL LEU ILE LYS VAL VAL ALA ALA SER LEU ASN SEQRES 6 A 332 PRO VAL ASP PHE LYS ARG ALA LEU GLY TYR PHE LYS ASP SEQRES 7 A 332 THR ASP SER PRO LEU PRO THR ILE PRO GLY TYR ASP VAL SEQRES 8 A 332 ALA GLY VAL VAL VAL LYS VAL GLY SER GLN VAL THR LYS SEQRES 9 A 332 PHE LYS VAL GLY ASP GLU VAL TYR GLY ASP LEU ASN GLU SEQRES 10 A 332 THR ALA LEU VAL ASN PRO THR ARG PHE GLY SER LEU ALA SEQRES 11 A 332 GLU TYR THR ALA ALA ASP GLU ARG VAL LEU ALA HIS LYS SEQRES 12 A 332 PRO LYS ASN LEU SER PHE ILE GLU ALA ALA SER LEU PRO SEQRES 13 A 332 LEU ALA ILE GLU THR ALA HIS GLU GLY LEU GLU ARG ALA SEQRES 14 A 332 GLU LEU SER ALA GLY LYS SER VAL LEU VAL LEU GLY GLY SEQRES 15 A 332 ALA GLY GLY VAL GLY THR HIS ILE ILE GLN LEU ALA LYS SEQRES 16 A 332 HIS VAL PHE GLY ALA SER LYS VAL ALA ALA THR ALA SER SEQRES 17 A 332 THR LYS LYS LEU ASP LEU LEU ARG THR LEU GLY ALA ASP SEQRES 18 A 332 LEU ALA ILE ASP TYR THR LYS GLU ASN PHE GLU ASP LEU SEQRES 19 A 332 PRO GLU LYS PHE ASP VAL VAL TYR ASP ALA VAL GLY GLU SEQRES 20 A 332 THR ASP LYS ALA VAL LYS ALA VAL LYS GLU GLY GLY LYS SEQRES 21 A 332 VAL VAL THR ILE VAL GLY PRO ALA THR PRO PRO ALA ILE SEQRES 22 A 332 LEU PHE VAL LEU THR SER LYS GLY SER VAL LEU GLU LYS SEQRES 23 A 332 LEU LYS PRO TYR LEU GLU SER GLY LYS VAL LYS PRO VAL SEQRES 24 A 332 LEU ASP PRO THR SER PRO TYR PRO PHE THR LYS VAL VAL SEQRES 25 A 332 GLU ALA PHE GLY TYR LEU GLU SER SER ARG ALA THR GLY SEQRES 26 A 332 LYS VAL VAL VAL TYR PRO ILE HET NDP A 401 48 HET 2XX A 402 10 HET SO4 A 403 5 HET EDO A 404 4 HET EDO A 405 4 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM 2XX (2R)-2-ETHYL-4-HYDROXY-5-METHYLFURAN-3(2H)-ONE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 2XX C7 H10 O3 FORMUL 4 SO4 O4 S 2- FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *454(H2 O) HELIX 1 1 PRO A 5 ILE A 9 5 5 HELIX 2 2 LYS A 23 LEU A 28 1 6 HELIX 3 3 ASN A 54 LEU A 62 1 9 HELIX 4 4 PHE A 65 ASP A 69 5 5 HELIX 5 5 SER A 137 LEU A 144 1 8 HELIX 6 6 LEU A 144 ALA A 158 1 15 HELIX 7 7 VAL A 175 VAL A 186 1 12 HELIX 8 8 SER A 197 LYS A 199 5 3 HELIX 9 9 LYS A 200 GLY A 208 1 9 HELIX 10 10 ASN A 219 LEU A 223 5 5 HELIX 11 11 GLU A 236 VAL A 241 1 6 HELIX 12 12 LYS A 269 GLY A 283 1 15 HELIX 13 13 PRO A 296 THR A 298 5 3 HELIX 14 14 LYS A 299 GLU A 308 1 10 SHEET 1 A 2 VAL A 12 VAL A 17 0 SHEET 2 A 2 LYS A 29 ALA A 35 -1 O VAL A 34 N ASN A 13 SHEET 1 B 5 TYR A 121 ASP A 125 0 SHEET 2 B 5 GLN A 43 SER A 52 -1 N ILE A 46 O THR A 122 SHEET 3 B 5 ASP A 79 VAL A 87 -1 O VAL A 83 N LYS A 47 SHEET 4 B 5 GLU A 99 ASP A 103 -1 O VAL A 100 N GLY A 82 SHEET 5 B 5 LEU A 129 HIS A 131 -1 O ALA A 130 N TYR A 101 SHEET 1 C 3 TYR A 121 ASP A 125 0 SHEET 2 C 3 GLN A 43 SER A 52 -1 N ILE A 46 O THR A 122 SHEET 3 C 3 VAL A 317 VAL A 318 -1 O VAL A 318 N ALA A 51 SHEET 1 D 6 LEU A 211 ASP A 214 0 SHEET 2 D 6 LYS A 191 ALA A 196 1 N ALA A 194 O ILE A 213 SHEET 3 D 6 SER A 165 LEU A 169 1 N VAL A 166 O ALA A 193 SHEET 4 D 6 PHE A 227 ASP A 232 1 O TYR A 231 N LEU A 167 SHEET 5 D 6 VAL A 244 THR A 252 1 O VAL A 251 N ASP A 232 SHEET 6 D 6 ILE A 262 LEU A 263 1 O ILE A 262 N THR A 252 CISPEP 1 LEU A 72 PRO A 73 0 -7.28 CISPEP 2 GLY A 255 PRO A 256 0 -7.14 CISPEP 3 PRO A 259 PRO A 260 0 15.94 CISPEP 4 SER A 293 PRO A 294 0 -4.35 CISPEP 5 TYR A 319 PRO A 320 0 -5.19 SITE 1 AC1 36 PRO A 55 LYS A 59 LEU A 146 THR A 150 SITE 2 AC1 36 GLY A 170 ALA A 172 GLY A 173 GLY A 174 SITE 3 AC1 36 VAL A 175 THR A 195 SER A 197 LYS A 200 SITE 4 AC1 36 TYR A 215 ALA A 233 VAL A 234 ILE A 253 SITE 5 AC1 36 VAL A 254 PHE A 264 VAL A 265 LEU A 266 SITE 6 AC1 36 SER A 310 ARG A 311 ALA A 312 2XX A 402 SITE 7 AC1 36 HOH A 502 HOH A 503 HOH A 504 HOH A 506 SITE 8 AC1 36 HOH A 507 HOH A 508 HOH A 555 HOH A 700 SITE 9 AC1 36 HOH A 719 HOH A 741 HOH A 817 HOH A 947 SITE 1 AC2 6 VAL A 56 LYS A 59 LEU A 109 ILE A 253 SITE 2 AC2 6 NDP A 401 HOH A 501 SITE 1 AC3 6 ARG A 127 LYS A 269 SER A 271 HOH A 538 SITE 2 AC3 6 HOH A 812 HOH A 855 SITE 1 AC4 8 VAL A 49 GLY A 163 SER A 190 ASP A 228 SITE 2 AC4 8 LYS A 245 HOH A 579 HOH A 625 HOH A 792 SITE 1 AC5 4 SER A 137 PHE A 138 ILE A 139 HOH A 784 CRYST1 70.104 70.104 174.740 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005723 0.00000