HEADER VIRAL PROTEIN 12-DEC-12 4IDH TITLE CRYSTAL STRUCTURE OF THE LARGE TERMINASE SUBUNIT GP2 OF BACTERIAL TITLE 2 VIRUS SF6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENE 2 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA PHAGE SF6; SOURCE 3 ORGANISM_COMMON: SHIGELLA FLEXNERI BACTERIOPHAGE VI; SOURCE 4 ORGANISM_TAXID: 10761; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS DNA PACKAGING, TERMINASE, ATPASE, NUCLEASE, ATP BINDING, MAGNESIUM KEYWDS 2 BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHAO,T.CHRISTENSEN,Y.KAMAU,L.TANG REVDAT 6 03-APR-24 4IDH 1 REMARK REVDAT 5 28-FEB-24 4IDH 1 SEQADV REVDAT 4 15-NOV-17 4IDH 1 REMARK REVDAT 3 29-MAY-13 4IDH 1 JRNL REVDAT 2 15-MAY-13 4IDH 1 JRNL REVDAT 1 01-MAY-13 4IDH 0 JRNL AUTH H.ZHAO,T.E.CHRISTENSEN,Y.N.KAMAU,L.TANG JRNL TITL STRUCTURES OF THE PHAGE SF6 LARGE TERMINASE PROVIDE NEW JRNL TITL 2 INSIGHTS INTO DNA TRANSLOCATION AND CLEAVAGE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 8075 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23630261 JRNL DOI 10.1073/PNAS.1301133110 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 62324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8602 - 4.7124 0.93 2734 144 0.1741 0.2128 REMARK 3 2 4.7124 - 3.7486 0.97 2714 143 0.1432 0.1597 REMARK 3 3 3.7486 - 3.2772 0.97 2694 142 0.1551 0.1868 REMARK 3 4 3.2772 - 2.9786 0.97 2680 141 0.1738 0.1897 REMARK 3 5 2.9786 - 2.7657 0.98 2679 141 0.1700 0.1992 REMARK 3 6 2.7657 - 2.6031 0.99 2687 141 0.1668 0.2314 REMARK 3 7 2.6031 - 2.4729 0.99 2708 143 0.1632 0.1757 REMARK 3 8 2.4729 - 2.3655 0.99 2689 142 0.1677 0.1901 REMARK 3 9 2.3655 - 2.2745 0.99 2676 140 0.1733 0.2238 REMARK 3 10 2.2745 - 2.1962 0.99 2694 143 0.2603 0.3284 REMARK 3 11 2.1962 - 2.1276 1.00 2710 142 0.1693 0.1716 REMARK 3 12 2.1276 - 2.0668 1.00 2684 141 0.1685 0.2361 REMARK 3 13 2.0668 - 2.0125 1.00 2712 142 0.1679 0.2100 REMARK 3 14 2.0125 - 1.9634 1.00 2693 143 0.1824 0.2073 REMARK 3 15 1.9634 - 1.9188 1.00 2665 140 0.2692 0.3196 REMARK 3 16 1.9188 - 1.8780 1.00 2691 142 0.3215 0.3893 REMARK 3 17 1.8780 - 1.8405 1.00 2700 142 0.2144 0.2332 REMARK 3 18 1.8405 - 1.8058 1.00 2657 139 0.2257 0.2764 REMARK 3 19 1.8058 - 1.7735 1.00 2709 144 0.2334 0.3063 REMARK 3 20 1.7735 - 1.7435 1.00 2671 140 0.2473 0.2690 REMARK 3 21 1.7435 - 1.7154 1.00 2651 139 0.2470 0.2742 REMARK 3 22 1.7154 - 1.6900 1.00 2709 143 0.2653 0.3451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3731 REMARK 3 ANGLE : 1.020 5058 REMARK 3 CHIRALITY : 0.074 545 REMARK 3 PLANARITY : 0.004 660 REMARK 3 DIHEDRAL : 12.375 1419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 3:173) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5063 43.4941 25.6209 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.1339 REMARK 3 T33: 0.1674 T12: 0.0303 REMARK 3 T13: -0.0484 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.9893 L22: 1.3295 REMARK 3 L33: 1.9762 L12: 0.2443 REMARK 3 L13: 0.2445 L23: 0.1344 REMARK 3 S TENSOR REMARK 3 S11: 0.0805 S12: -0.0436 S13: -0.1297 REMARK 3 S21: 0.2362 S22: 0.0147 S23: -0.2070 REMARK 3 S31: 0.1305 S32: 0.1648 S33: -0.0790 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 174:211) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9645 35.4201 45.9259 REMARK 3 T TENSOR REMARK 3 T11: 0.3271 T22: 0.2380 REMARK 3 T33: 0.2386 T12: 0.0370 REMARK 3 T13: 0.0023 T23: 0.0669 REMARK 3 L TENSOR REMARK 3 L11: 3.1790 L22: 2.3229 REMARK 3 L33: 3.4294 L12: -0.2508 REMARK 3 L13: 1.7516 L23: -0.1368 REMARK 3 S TENSOR REMARK 3 S11: -0.1858 S12: -0.1895 S13: -0.3941 REMARK 3 S21: 0.0011 S22: 0.3056 S23: 0.3538 REMARK 3 S31: 0.0952 S32: -0.2861 S33: -0.1065 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 212:465) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7329 39.1565 67.2087 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.1028 REMARK 3 T33: 0.0918 T12: -0.0033 REMARK 3 T13: -0.0191 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.2327 L22: 1.7367 REMARK 3 L33: 1.0363 L12: -0.1696 REMARK 3 L13: -0.1477 L23: -0.0283 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: 0.0146 S13: -0.0158 REMARK 3 S21: -0.0251 S22: -0.0043 S23: -0.0283 REMARK 3 S31: 0.0290 S32: -0.0025 S33: -0.0127 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03304 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62415 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 42.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NUCLEASE DOMAIN OF GP2 OF BACTERIAL VIRUS SF6 AND REMARK 200 ATPASE DOMAIN OF GP17 OF T4 BACTERIOPHAGE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, 15% ETHANOL, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.89500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.36500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.36500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.89500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 338 REMARK 465 ALA A 339 REMARK 465 TRP A 340 REMARK 465 ALA A 341 REMARK 465 ASP A 342 REMARK 465 GLU A 343 REMARK 465 VAL A 344 REMARK 465 VAL A 345 REMARK 465 GLN A 346 REMARK 465 GLY A 347 REMARK 465 ASP A 348 REMARK 465 ASN A 349 REMARK 465 SER A 466 REMARK 465 SER A 467 REMARK 465 SER A 468 REMARK 465 GLY A 469 REMARK 465 TRP A 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 997 O HOH A 1071 1.81 REMARK 500 O HOH A 977 O HOH A 1062 1.81 REMARK 500 O HOH A 1019 O HOH A 1048 1.86 REMARK 500 O HOH A 885 O HOH A 999 1.88 REMARK 500 NZ LYS A 105 O HOH A 991 1.89 REMARK 500 ND2 ASN A 55 O HOH A 890 1.90 REMARK 500 O HOH A 993 O HOH A 1040 1.91 REMARK 500 O HOH A 905 O HOH A 966 1.96 REMARK 500 O ILE A 4 O HOH A 1045 1.96 REMARK 500 O HOH A 983 O HOH A 1069 1.97 REMARK 500 SD MET A 84 O HOH A 1007 1.99 REMARK 500 O HOH A 897 O HOH A 920 2.02 REMARK 500 O HOH A 936 O HOH A 1053 2.03 REMARK 500 O HOH A 1035 O HOH A 1076 2.04 REMARK 500 NH1 ARG A 82 O HOH A 1087 2.07 REMARK 500 O HOH A 939 O HOH A 959 2.07 REMARK 500 O HOH A 915 O HOH A 1086 2.09 REMARK 500 O HOH A 959 O HOH A 989 2.09 REMARK 500 O HOH A 1028 O HOH A 1069 2.10 REMARK 500 O HOH A 769 O HOH A 798 2.10 REMARK 500 O HOH A 658 O HOH A 1036 2.12 REMARK 500 O HOH A 678 O HOH A 981 2.12 REMARK 500 O HOH A 820 O HOH A 957 2.13 REMARK 500 O HOH A 916 O HOH A 1026 2.13 REMARK 500 O HOH A 674 O HOH A 1031 2.13 REMARK 500 O HOH A 653 O HOH A 699 2.14 REMARK 500 O HOH A 860 O HOH A 906 2.16 REMARK 500 O HOH A 771 O HOH A 900 2.16 REMARK 500 O HOH A 875 O HOH A 946 2.17 REMARK 500 O HOH A 973 O HOH A 976 2.17 REMARK 500 O HOH A 928 O HOH A 1029 2.18 REMARK 500 O HOH A 653 O HOH A 662 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1057 O HOH A 1066 3645 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 149 -93.54 -105.84 REMARK 500 SER A 246 -139.59 60.49 REMARK 500 ASP A 247 -155.50 -139.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IEE RELATED DB: PDB REMARK 900 RELATED ID: 4IEI RELATED DB: PDB REMARK 900 RELATED ID: 4IFE RELATED DB: PDB DBREF 4IDH A 1 470 UNP Q716H3 Q716H3_BPSFV 1 470 SEQADV 4IDH MET A -19 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH GLY A -18 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH SER A -17 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH SER A -16 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH HIS A -15 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH HIS A -14 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH HIS A -13 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH HIS A -12 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH HIS A -11 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH HIS A -10 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH SER A -9 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH SER A -8 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH GLY A -7 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH LEU A -6 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH VAL A -5 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH PRO A -4 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH ALA A -3 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH GLY A -2 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH SER A -1 UNP Q716H3 EXPRESSION TAG SEQADV 4IDH HIS A 0 UNP Q716H3 EXPRESSION TAG SEQRES 1 A 490 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 490 LEU VAL PRO ALA GLY SER HIS MET THR SER ILE ASN PRO SEQRES 3 A 490 ILE PHE GLU PRO PHE ILE GLU ALA HIS ARG TYR LYS VAL SEQRES 4 A 490 ALA LYS GLY GLY ARG GLY SER GLY LYS SER TRP ALA ILE SEQRES 5 A 490 ALA ARG LEU LEU VAL GLU ALA ALA ARG ARG GLN PRO VAL SEQRES 6 A 490 ARG ILE LEU CYS ALA ARG GLU LEU GLN ASN SER ILE SER SEQRES 7 A 490 ASP SER VAL ILE ARG LEU LEU GLU ASP THR ILE GLU ARG SEQRES 8 A 490 GLU GLY TYR SER ALA GLU PHE GLU ILE GLN ARG SER MET SEQRES 9 A 490 ILE ARG HIS LEU GLY THR ASN ALA GLU PHE MET PHE TYR SEQRES 10 A 490 GLY ILE LYS ASN ASN PRO THR LYS ILE LYS SER LEU GLU SEQRES 11 A 490 GLY ILE ASP ILE CYS TRP VAL GLU GLU ALA GLU ALA VAL SEQRES 12 A 490 THR LYS GLU SER TRP ASP ILE LEU ILE PRO THR ILE ARG SEQRES 13 A 490 LYS PRO PHE SER GLU ILE TRP VAL SER PHE ASN PRO LYS SEQRES 14 A 490 ASN ILE LEU ASP ASP THR TYR GLN ARG PHE VAL VAL ASN SEQRES 15 A 490 PRO PRO ASP ASP ILE CYS LEU LEU THR VAL ASN TYR THR SEQRES 16 A 490 ASP ASN PRO HIS PHE PRO GLU VAL LEU ARG LEU GLU MET SEQRES 17 A 490 GLU GLU CYS LYS ARG ARG ASN PRO THR LEU TYR ARG HIS SEQRES 18 A 490 ILE TRP LEU GLY GLU PRO VAL SER ALA SER ASP MET ALA SEQRES 19 A 490 ILE ILE LYS ARG GLU TRP LEU GLU ALA ALA THR ASP ALA SEQRES 20 A 490 HIS LYS LYS LEU GLY TRP LYS ALA LYS GLY ALA VAL VAL SEQRES 21 A 490 SER ALA HIS ASP PRO SER ASP THR GLY PRO ASP ALA LYS SEQRES 22 A 490 GLY TYR ALA SER ARG HIS GLY SER VAL VAL LYS ARG ILE SEQRES 23 A 490 ALA GLU GLY LEU LEU MET ASP ILE ASN GLU GLY ALA ASP SEQRES 24 A 490 TRP ALA THR SER LEU ALA ILE GLU ASP GLY ALA ASP HIS SEQRES 25 A 490 TYR LEU TRP ASP GLY ASP GLY VAL GLY ALA GLY LEU ARG SEQRES 26 A 490 ARG GLN THR THR GLU ALA PHE SER GLY LYS LYS ILE THR SEQRES 27 A 490 ALA THR MET PHE LYS GLY SER GLU SER PRO PHE ASP GLU SEQRES 28 A 490 ASP ALA PRO TYR GLN ALA GLY ALA TRP ALA ASP GLU VAL SEQRES 29 A 490 VAL GLN GLY ASP ASN VAL ARG THR ILE GLY ASP VAL PHE SEQRES 30 A 490 ARG ASN LYS ARG ALA GLN PHE TYR TYR ALA LEU ALA ASP SEQRES 31 A 490 ARG LEU TYR LEU THR TYR ARG ALA VAL VAL HIS GLY GLU SEQRES 32 A 490 TYR ALA ASP PRO ASP ASP MET LEU SER PHE ASP LYS GLU SEQRES 33 A 490 ALA ILE GLY GLU LYS MET LEU GLU LYS LEU PHE ALA GLU SEQRES 34 A 490 LEU THR GLN ILE GLN ARG LYS PHE ASN ASN ASN GLY LYS SEQRES 35 A 490 LEU GLU LEU MET THR LYS VAL GLU MET LYS GLN LYS LEU SEQRES 36 A 490 GLY ILE PRO SER PRO ASN LEU ALA ASP ALA LEU MET MET SEQRES 37 A 490 CYS MET HIS CYS PRO ALA LEU VAL ARG GLU GLU THR GLU SEQRES 38 A 490 ILE TYR VAL PRO SER SER SER GLY TRP FORMUL 2 HOH *589(H2 O) HELIX 1 1 ASN A 5 ILE A 12 5 8 HELIX 2 2 GLY A 27 ARG A 41 1 15 HELIX 3 3 SER A 56 SER A 60 5 5 HELIX 4 4 VAL A 61 GLY A 73 1 13 HELIX 5 5 TYR A 74 ALA A 76 5 3 HELIX 6 6 ASN A 102 LEU A 109 1 8 HELIX 7 7 GLU A 119 VAL A 123 5 5 HELIX 8 8 THR A 124 ILE A 132 1 9 HELIX 9 9 PRO A 133 ILE A 135 5 3 HELIX 10 10 ASP A 153 VAL A 160 1 8 HELIX 11 11 ASN A 173 ASN A 177 5 5 HELIX 12 12 PRO A 181 ASN A 195 1 15 HELIX 13 13 ASN A 195 LEU A 204 1 10 HELIX 14 14 LYS A 217 THR A 225 1 9 HELIX 15 15 ASP A 226 GLY A 232 1 7 HELIX 16 16 ASP A 273 ASP A 288 1 16 HELIX 17 17 GLY A 299 GLY A 303 5 5 HELIX 18 18 LEU A 304 PHE A 312 1 9 HELIX 19 19 THR A 352 PHE A 357 1 6 HELIX 20 20 ASN A 359 GLY A 382 1 24 HELIX 21 21 ASP A 386 MET A 390 5 5 HELIX 22 22 ASP A 394 GLY A 399 1 6 HELIX 23 23 GLY A 399 THR A 411 1 13 HELIX 24 24 THR A 427 GLY A 436 1 10 HELIX 25 25 PRO A 440 CYS A 449 1 10 SHEET 1 A 8 PHE A 78 GLN A 81 0 SHEET 2 A 8 MET A 84 HIS A 87 -1 O MET A 84 N GLN A 81 SHEET 3 A 8 GLU A 93 GLY A 98 -1 O PHE A 94 N ILE A 85 SHEET 4 A 8 ARG A 46 ARG A 51 1 N ILE A 47 O GLU A 93 SHEET 5 A 8 ILE A 114 VAL A 117 1 O TRP A 116 N ALA A 50 SHEET 6 A 8 GLU A 141 PHE A 146 1 O TRP A 143 N CYS A 115 SHEET 7 A 8 TYR A 17 LYS A 21 1 N LYS A 18 O VAL A 144 SHEET 8 A 8 ILE A 167 THR A 171 1 O LEU A 170 N VAL A 19 SHEET 1 B 6 THR A 318 PHE A 322 0 SHEET 2 B 6 HIS A 292 ASP A 296 1 N TRP A 295 O PHE A 322 SHEET 3 B 6 VAL A 239 ASP A 244 1 N SER A 241 O HIS A 292 SHEET 4 B 6 LYS A 253 HIS A 259 -1 O ALA A 256 N ALA A 242 SHEET 5 B 6 VAL A 262 GLY A 269 -1 O GLY A 269 N LYS A 253 SHEET 6 B 6 SER A 392 PHE A 393 1 O SER A 392 N VAL A 263 CRYST1 57.790 63.440 150.730 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017304 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006634 0.00000