HEADER HYDROLASE/HYDROLASE INHIBITOR 13-DEC-12 4IE1 TITLE CRYSTAL STRUCTURE OF HUMAN ARGINASE-1 COMPLEXED WITH INHIBITOR 1H COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIVER-TYPE ARGINASE, TYPE I ARGINASE; COMPND 5 EC: 3.5.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS BORON COMPOUNDS, METALLOENZYME, ALPHA/BETA FOLD, HYDROLASE, ARGININE KEYWDS 2 METABOLISM, MANGANESE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.COUSIDO-SIAH,A.MITSCHLER,F.X.RUIZ,P.BECKETT,M.C.VAN ZANDT,M.K.JI, AUTHOR 2 D.WHITEHOUSE,T.RYDER,E.JAGDMANN,M.ANDREOLI,A.MAZUR,M.PADMANILAYAM, AUTHOR 3 H.SCHROETER,A.GOLEBIOWSKI,A.PODJARNY REVDAT 4 20-SEP-23 4IE1 1 REMARK LINK REVDAT 3 15-NOV-17 4IE1 1 REMARK REVDAT 2 03-APR-13 4IE1 1 JRNL REVDAT 1 20-MAR-13 4IE1 0 JRNL AUTH A.GOLEBIOWSKI,R.PAUL BECKETT,M.VAN ZANDT,M.K.JI, JRNL AUTH 2 D.WHITEHOUSE,T.R.RYDER,E.JAGDMANN,M.ANDREOLI,A.MAZUR, JRNL AUTH 3 M.PADMANILAYAM,A.COUSIDO-SIAH,A.MITSCHLER,F.X.RUIZ, JRNL AUTH 4 A.PODJARNY,H.SCHROETER JRNL TITL 2-SUBSTITUTED-2-AMINO-6-BORONOHEXANOIC ACIDS AS ARGINASE JRNL TITL 2 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 23 2027 2013 JRNL REFN ISSN 0960-894X JRNL PMID 23453840 JRNL DOI 10.1016/J.BMCL.2013.02.024 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 41127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.108 REMARK 3 R VALUE (WORKING SET) : 0.106 REMARK 3 FREE R VALUE : 0.127 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.2662 - 4.8987 0.95 2681 125 0.1327 0.1528 REMARK 3 2 4.8987 - 3.9030 0.93 2628 151 0.0967 0.1088 REMARK 3 3 3.9030 - 3.4140 0.94 2664 129 0.1201 0.1416 REMARK 3 4 3.4140 - 3.1038 0.92 2591 153 0.1250 0.1563 REMARK 3 5 3.1038 - 2.8824 0.93 2647 150 0.1143 0.1341 REMARK 3 6 2.8824 - 2.7132 0.92 2576 148 0.1186 0.1611 REMARK 3 7 2.7132 - 2.5778 0.93 2624 129 0.1078 0.1326 REMARK 3 8 2.5778 - 2.4659 0.92 2622 140 0.0978 0.1192 REMARK 3 9 2.4659 - 2.3712 0.91 2560 137 0.0981 0.1345 REMARK 3 10 2.3712 - 2.2896 0.92 2623 126 0.0909 0.1171 REMARK 3 11 2.2896 - 2.2181 0.91 2575 129 0.0833 0.1235 REMARK 3 12 2.2181 - 2.1548 0.91 2566 135 0.0811 0.0999 REMARK 3 13 2.1548 - 2.0982 0.91 2541 147 0.0822 0.0830 REMARK 3 14 2.0982 - 2.0471 0.89 2533 169 0.0709 0.0948 REMARK 3 15 2.0471 - 2.0006 0.90 2536 111 0.0679 0.0789 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.0200 REMARK 3 OPERATOR: -H,-K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4915 REMARK 3 ANGLE : 1.740 6671 REMARK 3 CHIRALITY : 0.141 767 REMARK 3 PLANARITY : 0.009 856 REMARK 3 DIHEDRAL : 15.605 1845 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : DOUBLE MIRRORS MONOCHROMATOR REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41127 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1D3V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MALONIC ACID, IMIDAZOL, BORIC REMARK 280 SYSTEM, 25% POLYETHYLENE GLYCOL (PEG) 1500, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K, PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 90.07400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 45.03700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 78.00637 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 587 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 623 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 43 -159.04 -96.64 REMARK 500 ASP A 61 67.55 -152.43 REMARK 500 GLN A 65 -123.78 50.86 REMARK 500 ARG A 180 7.46 -155.05 REMARK 500 GLN B 65 -120.53 51.93 REMARK 500 ASP B 124 149.57 -178.71 REMARK 500 ARG B 180 10.14 -142.79 REMARK 500 ASP B 181 80.63 -151.88 REMARK 500 PRO B 226 152.78 -43.54 REMARK 500 SER B 281 -6.21 -59.60 REMARK 500 PRO B 314 87.65 -66.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 44 CYS A 45 -144.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 ND1 REMARK 620 2 ASP A 124 OD2 95.3 REMARK 620 3 ASP A 128 OD1 84.9 93.8 REMARK 620 4 ASP A 232 OD2 103.8 80.2 169.7 REMARK 620 5 1EC A 401 O11 105.1 159.6 87.7 95.0 REMARK 620 6 1EC A 401 O13 169.2 94.9 90.9 81.4 64.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 HIS A 126 ND1 93.7 REMARK 620 3 ASP A 232 OD2 86.1 167.5 REMARK 620 4 ASP A 234 OD2 134.7 104.3 84.4 REMARK 620 5 ASP A 234 OD1 77.6 106.1 86.1 57.6 REMARK 620 6 1EC A 401 O13 92.6 85.1 82.4 129.5 165.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 101 ND1 REMARK 620 2 ASP B 124 OD1 95.6 REMARK 620 3 ASP B 128 OD1 89.8 92.5 REMARK 620 4 ASP B 232 OD2 101.1 82.3 168.3 REMARK 620 5 1EC B 501 O11 106.2 157.6 93.0 88.0 REMARK 620 6 1EC B 501 O13 170.0 94.4 88.9 81.1 64.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 HIS B 126 ND1 95.0 REMARK 620 3 ASP B 232 OD2 84.5 170.6 REMARK 620 4 ASP B 234 OD2 133.3 96.6 90.4 REMARK 620 5 ASP B 234 OD1 75.9 100.7 88.3 57.6 REMARK 620 6 1EC B 501 O13 92.5 90.2 80.5 132.3 164.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1EC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1EC B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D3V RELATED DB: PDB REMARK 900 RELATED ID: 2AEB RELATED DB: PDB DBREF 4IE1 A 5 318 UNP P05089 ARGI1_HUMAN 5 318 DBREF 4IE1 B 5 318 UNP P05089 ARGI1_HUMAN 5 318 SEQRES 1 A 314 SER ARG THR ILE GLY ILE ILE GLY ALA PRO PHE SER LYS SEQRES 2 A 314 GLY GLN PRO ARG GLY GLY VAL GLU GLU GLY PRO THR VAL SEQRES 3 A 314 LEU ARG LYS ALA GLY LEU LEU GLU LYS LEU LYS GLU GLN SEQRES 4 A 314 GLU CYS ASP VAL LYS ASP TYR GLY ASP LEU PRO PHE ALA SEQRES 5 A 314 ASP ILE PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN SEQRES 6 A 314 PRO ARG SER VAL GLY LYS ALA SER GLU GLN LEU ALA GLY SEQRES 7 A 314 LYS VAL ALA GLU VAL LYS LYS ASN GLY ARG ILE SER LEU SEQRES 8 A 314 VAL LEU GLY GLY ASP HIS SER LEU ALA ILE GLY SER ILE SEQRES 9 A 314 SER GLY HIS ALA ARG VAL HIS PRO ASP LEU GLY VAL ILE SEQRES 10 A 314 TRP VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR SEQRES 11 A 314 THR THR SER GLY ASN LEU HIS GLY GLN PRO VAL SER PHE SEQRES 12 A 314 LEU LEU LYS GLU LEU LYS GLY LYS ILE PRO ASP VAL PRO SEQRES 13 A 314 GLY PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP SEQRES 14 A 314 ILE VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU SEQRES 15 A 314 HIS TYR ILE LEU LYS THR LEU GLY ILE LYS TYR PHE SER SEQRES 16 A 314 MET THR GLU VAL ASP ARG LEU GLY ILE GLY LYS VAL MET SEQRES 17 A 314 GLU GLU THR LEU SER TYR LEU LEU GLY ARG LYS LYS ARG SEQRES 18 A 314 PRO ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO SEQRES 19 A 314 SER PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY SEQRES 20 A 314 LEU THR TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE SEQRES 21 A 314 TYR LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU SEQRES 22 A 314 VAL ASN PRO SER LEU GLY LYS THR PRO GLU GLU VAL THR SEQRES 23 A 314 ARG THR VAL ASN THR ALA VAL ALA ILE THR LEU ALA CYS SEQRES 24 A 314 PHE GLY LEU ALA ARG GLU GLY ASN HIS LYS PRO ILE ASP SEQRES 25 A 314 TYR LEU SEQRES 1 B 314 SER ARG THR ILE GLY ILE ILE GLY ALA PRO PHE SER LYS SEQRES 2 B 314 GLY GLN PRO ARG GLY GLY VAL GLU GLU GLY PRO THR VAL SEQRES 3 B 314 LEU ARG LYS ALA GLY LEU LEU GLU LYS LEU LYS GLU GLN SEQRES 4 B 314 GLU CYS ASP VAL LYS ASP TYR GLY ASP LEU PRO PHE ALA SEQRES 5 B 314 ASP ILE PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN SEQRES 6 B 314 PRO ARG SER VAL GLY LYS ALA SER GLU GLN LEU ALA GLY SEQRES 7 B 314 LYS VAL ALA GLU VAL LYS LYS ASN GLY ARG ILE SER LEU SEQRES 8 B 314 VAL LEU GLY GLY ASP HIS SER LEU ALA ILE GLY SER ILE SEQRES 9 B 314 SER GLY HIS ALA ARG VAL HIS PRO ASP LEU GLY VAL ILE SEQRES 10 B 314 TRP VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR SEQRES 11 B 314 THR THR SER GLY ASN LEU HIS GLY GLN PRO VAL SER PHE SEQRES 12 B 314 LEU LEU LYS GLU LEU LYS GLY LYS ILE PRO ASP VAL PRO SEQRES 13 B 314 GLY PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP SEQRES 14 B 314 ILE VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU SEQRES 15 B 314 HIS TYR ILE LEU LYS THR LEU GLY ILE LYS TYR PHE SER SEQRES 16 B 314 MET THR GLU VAL ASP ARG LEU GLY ILE GLY LYS VAL MET SEQRES 17 B 314 GLU GLU THR LEU SER TYR LEU LEU GLY ARG LYS LYS ARG SEQRES 18 B 314 PRO ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO SEQRES 19 B 314 SER PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY SEQRES 20 B 314 LEU THR TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE SEQRES 21 B 314 TYR LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU SEQRES 22 B 314 VAL ASN PRO SER LEU GLY LYS THR PRO GLU GLU VAL THR SEQRES 23 B 314 ARG THR VAL ASN THR ALA VAL ALA ILE THR LEU ALA CYS SEQRES 24 B 314 PHE GLY LEU ALA ARG GLU GLY ASN HIS LYS PRO ILE ASP SEQRES 25 B 314 TYR LEU HET 1EC A 401 17 HET MN A 402 1 HET MN A 403 1 HET 1EC B 501 17 HET MN B 502 1 HET MN B 503 1 HETNAM 1EC [(5R)-5-AMINO-5-CARBOXY-8-HYDROXYOCTYL](TRIHYDROXY) HETNAM 2 1EC BORATE(1-) HETNAM MN MANGANESE (II) ION FORMUL 3 1EC 2(C9 H21 B N O6 1-) FORMUL 4 MN 4(MN 2+) FORMUL 9 HOH *189(H2 O) HELIX 1 1 ARG A 21 GLU A 25 5 5 HELIX 2 2 GLU A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 GLN A 43 1 9 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 LEU A 103 HIS A 115 1 13 HELIX 7 7 ASN A 139 GLY A 142 5 4 HELIX 8 8 GLN A 143 LEU A 149 1 7 HELIX 9 9 LYS A 150 LYS A 153 5 4 HELIX 10 10 SER A 170 LYS A 172 5 3 HELIX 11 11 ASP A 183 GLY A 194 1 12 HELIX 12 12 SER A 199 GLY A 207 1 9 HELIX 13 13 GLY A 207 GLY A 221 1 15 HELIX 14 14 ASP A 234 LEU A 236 5 3 HELIX 15 15 THR A 253 GLY A 268 1 16 HELIX 16 16 ASN A 279 GLY A 283 5 5 HELIX 17 17 THR A 285 PHE A 304 1 20 HELIX 18 18 GLY B 23 GLU B 25 5 3 HELIX 19 19 GLU B 26 ALA B 34 1 9 HELIX 20 20 GLY B 35 GLN B 43 1 9 HELIX 21 21 ASN B 69 ASN B 90 1 22 HELIX 22 22 ASP B 100 SER B 102 5 3 HELIX 23 23 LEU B 103 HIS B 115 1 13 HELIX 24 24 ASN B 139 GLY B 142 5 4 HELIX 25 25 GLN B 143 LEU B 149 1 7 HELIX 26 26 LYS B 150 LYS B 153 5 4 HELIX 27 27 SER B 170 LYS B 172 5 3 HELIX 28 28 ASP B 183 GLY B 194 1 12 HELIX 29 29 SER B 199 GLY B 221 1 23 HELIX 30 30 ASP B 234 LEU B 236 5 3 HELIX 31 31 THR B 253 THR B 267 1 15 HELIX 32 32 ASN B 279 GLY B 283 5 5 HELIX 33 33 THR B 285 PHE B 304 1 20 SHEET 1 A 8 ASP A 46 ASP A 52 0 SHEET 2 A 8 THR A 7 ALA A 13 1 N ILE A 10 O TYR A 50 SHEET 3 A 8 ILE A 93 GLY A 98 1 O ILE A 93 N THR A 7 SHEET 4 A 8 LEU A 270 MET A 276 1 O LEU A 273 N VAL A 96 SHEET 5 A 8 ILE A 227 ASP A 232 1 N PHE A 231 O MET A 276 SHEET 6 A 8 GLY A 119 VAL A 123 1 N GLY A 119 O HIS A 228 SHEET 7 A 8 ILE A 174 ILE A 177 1 O VAL A 175 N TRP A 122 SHEET 8 A 8 LYS A 196 PHE A 198 1 O PHE A 198 N TYR A 176 SHEET 1 B 8 ASP B 46 ASP B 52 0 SHEET 2 B 8 THR B 7 ALA B 13 1 N ILE B 8 O ASP B 46 SHEET 3 B 8 ILE B 93 GLY B 98 1 O LEU B 97 N ALA B 13 SHEET 4 B 8 LEU B 270 MET B 276 1 O LEU B 273 N VAL B 96 SHEET 5 B 8 ILE B 227 ASP B 232 1 N PHE B 231 O ASP B 274 SHEET 6 B 8 GLY B 119 VAL B 123 1 N ILE B 121 O SER B 230 SHEET 7 B 8 ILE B 174 ILE B 177 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 LYS B 196 PHE B 198 1 O PHE B 198 N TYR B 176 LINK ND1 HIS A 101 MN MN A 403 1555 1555 2.30 LINK OD1 ASP A 124 MN MN A 402 1555 1555 2.21 LINK OD2 ASP A 124 MN MN A 403 1555 1555 2.08 LINK ND1 HIS A 126 MN MN A 402 1555 1555 2.20 LINK OD1 ASP A 128 MN MN A 403 1555 1555 2.21 LINK OD2 ASP A 232 MN MN A 402 1555 1555 2.32 LINK OD2 ASP A 232 MN MN A 403 1555 1555 2.25 LINK OD2 ASP A 234 MN MN A 402 1555 1555 2.04 LINK OD1 ASP A 234 MN MN A 402 1555 1555 2.46 LINK O13 1EC A 401 MN MN A 402 1555 1555 2.15 LINK O11 1EC A 401 MN MN A 403 1555 1555 2.24 LINK O13 1EC A 401 MN MN A 403 1555 1555 2.27 LINK ND1 HIS B 101 MN MN B 503 1555 1555 2.25 LINK OD2 ASP B 124 MN MN B 502 1555 1555 2.10 LINK OD1 ASP B 124 MN MN B 503 1555 1555 2.20 LINK ND1 HIS B 126 MN MN B 502 1555 1555 2.29 LINK OD1 ASP B 128 MN MN B 503 1555 1555 2.20 LINK OD2 ASP B 232 MN MN B 502 1555 1555 2.42 LINK OD2 ASP B 232 MN MN B 503 1555 1555 2.30 LINK OD2 ASP B 234 MN MN B 502 1555 1555 2.08 LINK OD1 ASP B 234 MN MN B 502 1555 1555 2.49 LINK O13 1EC B 501 MN MN B 502 1555 1555 2.26 LINK O11 1EC B 501 MN MN B 503 1555 1555 2.28 LINK O13 1EC B 501 MN MN B 503 1555 1555 2.35 CISPEP 1 GLY A 98 GLY A 99 0 -0.52 CISPEP 2 GLY B 98 GLY B 99 0 3.19 SITE 1 AC1 19 HIS A 101 ASP A 124 HIS A 126 ASP A 128 SITE 2 AC1 19 ASN A 130 THR A 136 SER A 137 HIS A 141 SITE 3 AC1 19 ASP A 183 ASP A 232 ASP A 234 THR A 246 SITE 4 AC1 19 GLU A 277 MN A 402 MN A 403 HOH A 520 SITE 5 AC1 19 HOH A 530 HOH A 558 HOH A 607 SITE 1 AC2 6 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC2 6 1EC A 401 MN A 403 SITE 1 AC3 6 HIS A 101 ASP A 124 ASP A 128 ASP A 232 SITE 2 AC3 6 1EC A 401 MN A 402 SITE 1 AC4 21 ARG A 222 HIS B 101 ASP B 124 HIS B 126 SITE 2 AC4 21 ASP B 128 ASN B 130 THR B 136 SER B 137 SITE 3 AC4 21 HIS B 141 ASP B 183 ASP B 232 ASP B 234 SITE 4 AC4 21 THR B 246 GLU B 277 MN B 502 MN B 503 SITE 5 AC4 21 HOH B 656 HOH B 657 HOH B 659 HOH B 662 SITE 6 AC4 21 HOH B 668 SITE 1 AC5 6 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC5 6 1EC B 501 MN B 503 SITE 1 AC6 6 HIS B 101 ASP B 124 ASP B 128 ASP B 232 SITE 2 AC6 6 1EC B 501 MN B 502 CRYST1 90.074 90.074 69.272 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011102 0.006410 0.000000 0.00000 SCALE2 0.000000 0.012819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014436 0.00000