HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 13-DEC-12 4IE7 TITLE CRYSTAL STRUCTURE OF THE HUMAN FAT MASS AND OBESITY ASSOCIATED PROTEIN TITLE 2 (FTO) IN COMPLEX WITH CITRATE AND RHEIN (RHN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 32-505; COMPND 5 SYNONYM: FAT MASS AND OBESITY-ASSOCIATED PROTEIN; COMPND 6 EC: 1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FTO, KIAA1752; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DOUBLE-STRANDED BETA HELIX, JELLY-ROLL MOTIF, OXIDOREDUCTASE, KEYWDS 2 DIOXYGENASE, NUCLEIC ACID DEMETHYLASE, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.S.AIK,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 5 08-NOV-23 4IE7 1 REMARK SEQADV REVDAT 4 15-NOV-17 4IE7 1 REMARK REVDAT 3 31-JUL-13 4IE7 1 JRNL REVDAT 2 17-APR-13 4IE7 1 JRNL REVDAT 1 03-APR-13 4IE7 0 JRNL AUTH W.S.AIK,M.DEMETRIADES,M.K.K.HAMDAN,E.A.L.BAGG,K.K.YEOH, JRNL AUTH 2 C.LEJEUNE,Z.ZHANG,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF THE FAT MASS AND OBESITY JRNL TITL 2 ASSOCIATED PROTEIN (FTO) JRNL REF J.MED.CHEM. V. 56 3680 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23547775 JRNL DOI 10.1021/JM400193D REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8884 - 6.2603 1.00 0 136 0.1646 0.1788 REMARK 3 2 2.6654 - 2.6004 1.00 0 144 0.2241 0.2826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 NULL REMARK 3 ANGLE : 1.250 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 3LFM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11.5% PEG 3350, 100MM TRISODIUM REMARK 280 CITRATE PH5.6, 4% TERT-BUTANOL, 1MM ZNSO4, 2MM RHN, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.81200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.88333 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.53300 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 70.81200 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 40.88333 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.53300 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 70.81200 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 40.88333 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.53300 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.76665 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 57.06600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 81.76665 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 57.06600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 81.76665 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.06600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 LYS A 126 REMARK 465 HIS A 127 REMARK 465 ASN A 164 REMARK 465 GLU A 165 REMARK 465 ASP A 166 REMARK 465 ALA A 167 REMARK 465 VAL A 168 REMARK 465 PRO A 169 REMARK 465 LEU A 170 REMARK 465 CYS A 171 REMARK 465 MET A 172 REMARK 465 SER A 173 REMARK 465 ALA A 174 REMARK 465 ASP A 175 REMARK 465 PHE A 176 REMARK 465 PRO A 177 REMARK 465 ARG A 178 REMARK 465 VAL A 179 REMARK 465 GLY A 180 REMARK 465 MET A 181 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 TYR A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 GLN A 188 REMARK 465 GLY A 251 REMARK 465 PRO A 252 REMARK 465 GLU A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 SER A 256 REMARK 465 GLU A 257 REMARK 465 ASP A 258 REMARK 465 ASP A 259 REMARK 465 SER A 260 REMARK 465 HIS A 261 REMARK 465 LYS A 504 REMARK 465 PRO A 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 63 CD CE NZ REMARK 470 ILE A 97 CG1 CG2 CD1 REMARK 470 VAL A 120 CG1 CG2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 SER A 123 OG REMARK 470 ASN A 124 CG OD1 ND2 REMARK 470 THR A 128 OG1 CG2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 LYS A 194 CD CE NZ REMARK 470 GLN A 210 CG CD OE1 NE2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 LYS A 216 CE NZ REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 LEU A 262 CG CD1 CD2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 GLN A 336 CG CD OE1 NE2 REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 ARG A 390 NH1 NH2 REMARK 470 CYS A 392 SG REMARK 470 LYS A 408 CD CE NZ REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 LEU A 439 CG CD1 CD2 REMARK 470 ARG A 450 NE CZ NH1 NH2 REMARK 470 ARG A 459 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 462 NE CZ NH1 NH2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 LYS A 478 CG CD CE NZ REMARK 470 ASP A 479 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 385 OH TYR A 389 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 46 42.50 -145.00 REMARK 500 GLN A 86 52.62 30.78 REMARK 500 SER A 123 144.18 179.00 REMARK 500 ASN A 124 89.88 -165.13 REMARK 500 ALA A 130 -78.08 -41.49 REMARK 500 CYS A 249 108.96 -53.65 REMARK 500 HIS A 290 -155.60 -102.85 REMARK 500 ASP A 299 -123.18 68.84 REMARK 500 TRP A 378 -71.76 -117.59 REMARK 500 ASN A 387 71.67 52.97 REMARK 500 CYS A 472 99.32 -68.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 ASP A 233 OD1 99.6 REMARK 620 3 HIS A 307 NE2 91.4 118.8 REMARK 620 4 FLC A 603 OB2 137.6 107.5 102.7 REMARK 620 5 FLC A 603 OB1 85.3 155.6 84.7 57.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RHN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LFM RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH NOG AND 3-METHYLTHYMIDINE REMARK 900 RELATED ID: 4IDZ RELATED DB: PDB REMARK 900 RELATED ID: 4IE0 RELATED DB: PDB REMARK 900 RELATED ID: 4IE4 RELATED DB: PDB REMARK 900 RELATED ID: 4IE5 RELATED DB: PDB REMARK 900 RELATED ID: 4IE6 RELATED DB: PDB DBREF 4IE7 A 32 505 UNP Q9C0B1 FTO_HUMAN 32 505 SEQADV 4IE7 MET A 11 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 GLY A 12 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 SER A 13 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 SER A 14 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 HIS A 15 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 HIS A 16 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 HIS A 17 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 HIS A 18 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 HIS A 19 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 HIS A 20 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 SER A 21 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 SER A 22 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 GLY A 23 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 LEU A 24 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 VAL A 25 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 PRO A 26 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 ARG A 27 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 GLY A 28 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 SER A 29 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 HIS A 30 UNP Q9C0B1 EXPRESSION TAG SEQADV 4IE7 MET A 31 UNP Q9C0B1 EXPRESSION TAG SEQRES 1 A 495 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 495 LEU VAL PRO ARG GLY SER HIS MET THR PRO LYS ASP ASP SEQRES 3 A 495 GLU PHE TYR GLN GLN TRP GLN LEU LYS TYR PRO LYS LEU SEQRES 4 A 495 ILE LEU ARG GLU ALA SER SER VAL SER GLU GLU LEU HIS SEQRES 5 A 495 LYS GLU VAL GLN GLU ALA PHE LEU THR LEU HIS LYS HIS SEQRES 6 A 495 GLY CYS LEU PHE ARG ASP LEU VAL ARG ILE GLN GLY LYS SEQRES 7 A 495 ASP LEU LEU THR PRO VAL SER ARG ILE LEU ILE GLY ASN SEQRES 8 A 495 PRO GLY CYS THR TYR LYS TYR LEU ASN THR ARG LEU PHE SEQRES 9 A 495 THR VAL PRO TRP PRO VAL LYS GLY SER ASN ILE LYS HIS SEQRES 10 A 495 THR GLU ALA GLU ILE ALA ALA ALA CYS GLU THR PHE LEU SEQRES 11 A 495 LYS LEU ASN ASP TYR LEU GLN ILE GLU THR ILE GLN ALA SEQRES 12 A 495 LEU GLU GLU LEU ALA ALA LYS GLU LYS ALA ASN GLU ASP SEQRES 13 A 495 ALA VAL PRO LEU CYS MET SER ALA ASP PHE PRO ARG VAL SEQRES 14 A 495 GLY MET GLY SER SER TYR ASN GLY GLN ASP GLU VAL ASP SEQRES 15 A 495 ILE LYS SER ARG ALA ALA TYR ASN VAL THR LEU LEU ASN SEQRES 16 A 495 PHE MET ASP PRO GLN LYS MET PRO TYR LEU LYS GLU GLU SEQRES 17 A 495 PRO TYR PHE GLY MET GLY LYS MET ALA VAL SER TRP HIS SEQRES 18 A 495 HIS ASP GLU ASN LEU VAL ASP ARG SER ALA VAL ALA VAL SEQRES 19 A 495 TYR SER TYR SER CYS GLU GLY PRO GLU GLU GLU SER GLU SEQRES 20 A 495 ASP ASP SER HIS LEU GLU GLY ARG ASP PRO ASP ILE TRP SEQRES 21 A 495 HIS VAL GLY PHE LYS ILE SER TRP ASP ILE GLU THR PRO SEQRES 22 A 495 GLY LEU ALA ILE PRO LEU HIS GLN GLY ASP CYS TYR PHE SEQRES 23 A 495 MET LEU ASP ASP LEU ASN ALA THR HIS GLN HIS CYS VAL SEQRES 24 A 495 LEU ALA GLY SER GLN PRO ARG PHE SER SER THR HIS ARG SEQRES 25 A 495 VAL ALA GLU CYS SER THR GLY THR LEU ASP TYR ILE LEU SEQRES 26 A 495 GLN ARG CYS GLN LEU ALA LEU GLN ASN VAL CYS ASP ASP SEQRES 27 A 495 VAL ASP ASN ASP ASP VAL SER LEU LYS SER PHE GLU PRO SEQRES 28 A 495 ALA VAL LEU LYS GLN GLY GLU GLU ILE HIS ASN GLU VAL SEQRES 29 A 495 GLU PHE GLU TRP LEU ARG GLN PHE TRP PHE GLN GLY ASN SEQRES 30 A 495 ARG TYR ARG LYS CYS THR ASP TRP TRP CYS GLN PRO MET SEQRES 31 A 495 ALA GLN LEU GLU ALA LEU TRP LYS LYS MET GLU GLY VAL SEQRES 32 A 495 THR ASN ALA VAL LEU HIS GLU VAL LYS ARG GLU GLY LEU SEQRES 33 A 495 PRO VAL GLU GLN ARG ASN GLU ILE LEU THR ALA ILE LEU SEQRES 34 A 495 ALA SER LEU THR ALA ARG GLN ASN LEU ARG ARG GLU TRP SEQRES 35 A 495 HIS ALA ARG CYS GLN SER ARG ILE ALA ARG THR LEU PRO SEQRES 36 A 495 ALA ASP GLN LYS PRO GLU CYS ARG PRO TYR TRP GLU LYS SEQRES 37 A 495 ASP ASP ALA SER MET PRO LEU PRO PHE ASP LEU THR ASP SEQRES 38 A 495 ILE VAL SER GLU LEU ARG GLY GLN LEU LEU GLU ALA LYS SEQRES 39 A 495 PRO HET ZN A 601 1 HET RHN A 602 21 HET FLC A 603 13 HETNAM ZN ZINC ION HETNAM RHN 4,5-DIHYDROXY-9,10-DIOXO-9,10-DIHYDROANTHRACENE-2- HETNAM 2 RHN CARBOXYLIC ACID HETNAM FLC CITRATE ANION HETSYN RHN RHEIN; RHUBARB YELLOW FORMUL 2 ZN ZN 2+ FORMUL 3 RHN C15 H8 O6 FORMUL 4 FLC C6 H5 O7 3- FORMUL 5 HOH *21(H2 O) HELIX 1 1 GLU A 37 TYR A 46 1 10 HELIX 2 2 GLU A 53 VAL A 57 5 5 HELIX 3 3 SER A 58 HIS A 75 1 18 HELIX 4 4 GLU A 129 LYS A 162 1 34 HELIX 5 5 GLU A 190 ALA A 197 1 8 HELIX 6 6 ASP A 300 THR A 304 1 5 HELIX 7 7 THR A 330 GLN A 343 1 14 HELIX 8 8 GLU A 360 GLU A 377 1 18 HELIX 9 9 TRP A 378 GLN A 385 1 8 HELIX 10 10 ARG A 388 CYS A 392 5 5 HELIX 11 11 TRP A 396 LYS A 422 1 27 HELIX 12 12 PRO A 427 SER A 458 1 32 HELIX 13 13 ILE A 460 LEU A 464 5 5 HELIX 14 14 LEU A 489 LEU A 500 1 12 SHEET 1 A 6 HIS A 30 MET A 31 0 SHEET 2 A 6 GLY A 284 LEU A 289 1 O ALA A 286 N MET A 31 SHEET 3 A 6 TRP A 270 ILE A 276 -1 N TRP A 270 O LEU A 289 SHEET 4 A 6 HIS A 305 LEU A 310 -1 O LEU A 310 N HIS A 271 SHEET 5 A 6 LYS A 225 HIS A 231 -1 N VAL A 228 O VAL A 309 SHEET 6 A 6 LYS A 216 GLU A 217 -1 N LYS A 216 O MET A 226 SHEET 1 B 7 LEU A 49 ARG A 52 0 SHEET 2 B 7 GLN A 291 MET A 297 -1 O CYS A 294 N ARG A 52 SHEET 3 B 7 VAL A 242 SER A 248 -1 N SER A 246 O ASP A 293 SHEET 4 B 7 ARG A 316 ARG A 322 -1 O PHE A 317 N TYR A 247 SHEET 5 B 7 VAL A 201 MET A 207 -1 N VAL A 201 O ARG A 322 SHEET 6 B 7 SER A 95 GLY A 100 -1 N ILE A 97 O LEU A 204 SHEET 7 B 7 VAL A 116 PRO A 117 1 O VAL A 116 N LEU A 98 SHEET 1 C 2 LEU A 82 ILE A 85 0 SHEET 2 C 2 LYS A 88 LEU A 91 -1 O LYS A 88 N ILE A 85 SHEET 1 D 2 THR A 105 TYR A 108 0 SHEET 2 D 2 THR A 111 PHE A 114 -1 O LEU A 113 N TYR A 106 LINK NE2 HIS A 231 ZN ZN A 601 1555 1555 2.03 LINK OD1 ASP A 233 ZN ZN A 601 1555 1555 2.04 LINK NE2 HIS A 307 ZN ZN A 601 1555 1555 2.07 LINK ZN ZN A 601 OB2 FLC A 603 1555 1555 2.13 LINK ZN ZN A 601 OB1 FLC A 603 1555 1555 2.43 CISPEP 1 ARG A 473 PRO A 474 0 4.17 SITE 1 AC1 4 HIS A 231 ASP A 233 HIS A 307 FLC A 603 SITE 1 AC2 12 ARG A 96 TYR A 106 TYR A 108 LEU A 109 SITE 2 AC2 12 VAL A 228 SER A 229 HIS A 231 HIS A 232 SITE 3 AC2 12 ASP A 233 GLU A 234 ARG A 322 FLC A 603 SITE 1 AC3 15 ARG A 96 ASN A 205 VAL A 228 HIS A 231 SITE 2 AC3 15 ASP A 233 VAL A 244 TYR A 295 HIS A 307 SITE 3 AC3 15 VAL A 309 ARG A 316 SER A 318 THR A 320 SITE 4 AC3 15 ARG A 322 ZN A 601 RHN A 602 CRYST1 141.624 141.624 85.599 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007061 0.004077 0.000000 0.00000 SCALE2 0.000000 0.008153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011682 0.00000