data_4IEJ # _entry.id 4IEJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4IEJ RCSB RCSB076652 WWPDB D_1000076652 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-423958 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4IEJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-12-13 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for T-Cell Biology (TCELL)' 2 # _citation.id primary _citation.title 'Crystal structure of a DNA methyltransferase 1 associated protein 1 (DMAP1) from Homo sapiens at 1.45 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Joint Center for Structural Genomics (JCSG)' 1 primary 'Partnership for T-Cell Biology' 2 # _cell.entry_id 4IEJ _cell.length_a 37.353 _cell.length_b 37.353 _cell.length_c 229.960 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IEJ _symmetry.Int_Tables_number 178 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA methyltransferase 1-associated protein 1' 11216.549 1 ? ? 'SANT domain containing residues 121-212' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 water nat water 18.015 76 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DNMAP1, DNMT1-associated protein 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC AKLANVRAVPGTD ; _entity_poly.pdbx_seq_one_letter_code_can ;GGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC AKLANVRAVPGTD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-423958 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 LYS n 1 4 ASP n 1 5 TYR n 1 6 PRO n 1 7 PHE n 1 8 ALA n 1 9 ARG n 1 10 PHE n 1 11 ASN n 1 12 LYS n 1 13 THR n 1 14 VAL n 1 15 GLN n 1 16 VAL n 1 17 PRO n 1 18 VAL n 1 19 TYR n 1 20 SER n 1 21 GLU n 1 22 GLN n 1 23 GLU n 1 24 TYR n 1 25 GLN n 1 26 LEU n 1 27 TYR n 1 28 LEU n 1 29 HIS n 1 30 ASP n 1 31 ASP n 1 32 ALA n 1 33 TRP n 1 34 THR n 1 35 LYS n 1 36 ALA n 1 37 GLU n 1 38 THR n 1 39 ASP n 1 40 HIS n 1 41 LEU n 1 42 PHE n 1 43 ASP n 1 44 LEU n 1 45 SER n 1 46 ARG n 1 47 ARG n 1 48 PHE n 1 49 ASP n 1 50 LEU n 1 51 ARG n 1 52 PHE n 1 53 VAL n 1 54 VAL n 1 55 ILE n 1 56 HIS n 1 57 ASP n 1 58 ARG n 1 59 TYR n 1 60 ASP n 1 61 HIS n 1 62 GLN n 1 63 GLN n 1 64 PHE n 1 65 LYS n 1 66 LYS n 1 67 ARG n 1 68 SER n 1 69 VAL n 1 70 GLU n 1 71 ASP n 1 72 LEU n 1 73 LYS n 1 74 GLU n 1 75 ARG n 1 76 TYR n 1 77 TYR n 1 78 HIS n 1 79 ILE n 1 80 CYS n 1 81 ALA n 1 82 LYS n 1 83 LEU n 1 84 ALA n 1 85 ASN n 1 86 VAL n 1 87 ARG n 1 88 ALA n 1 89 VAL n 1 90 PRO n 1 91 GLY n 1 92 THR n 1 93 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC008053, DMAP1, KIAA1425' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DMAP1_HUMAN _struct_ref.pdbx_db_accession Q9NPF5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA KLANVRAVPGTD ; _struct_ref.pdbx_align_begin 121 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4IEJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 93 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NPF5 _struct_ref_seq.db_align_beg 121 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 212 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 121 _struct_ref_seq.pdbx_auth_seq_align_end 212 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4IEJ _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9NPF5 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'leader sequence' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4IEJ # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.20M calcium chloride 20.00% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Rhodium-coated vertical and horizontal focusing mirrors, liquid-nitrogen cooled double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2012-05-31 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4IEJ _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 38.327 _reflns.number_obs 18199 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_netI_over_sigmaI 18.990 _reflns.percent_possible_obs 99.700 _reflns.B_iso_Wilson_estimate 23.311 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.450 1.500 15770 ? 1696 0.984 2.3 ? ? ? ? ? 99.700 1 1 1.500 1.560 15901 ? 1763 0.757 3.0 ? ? ? ? ? 99.900 2 1 1.560 1.630 15565 ? 1733 0.533 4.2 ? ? ? ? ? 99.900 3 1 1.630 1.720 17124 ? 1837 0.350 6.4 ? ? ? ? ? 99.800 4 1 1.720 1.830 16332 ? 1804 0.239 9.3 ? ? ? ? ? 99.900 5 1 1.830 1.970 15716 ? 1775 0.140 14.3 ? ? ? ? ? 99.400 6 1 1.970 2.170 16795 ? 1818 0.080 23.5 ? ? ? ? ? 100.000 7 1 2.170 2.480 15603 ? 1799 0.053 32.4 ? ? ? ? ? 99.400 8 1 2.480 3.120 16570 ? 1880 0.043 41.4 ? ? ? ? ? 99.900 9 1 3.120 38.327 15913 ? 2094 0.035 46.0 ? ? ? ? ? 99.200 10 1 # _refine.entry_id 4IEJ _refine.ls_d_res_high 1.4500 _refine.ls_d_res_low 38.327 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7800 _refine.ls_number_reflns_obs 18079 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 2. CALCIUM ION MODELED IS PRESENT IN CRYSTALLIZATION BUFFER. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1984 _refine.ls_R_factor_R_work 0.1970 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2259 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0900 _refine.ls_number_reflns_R_free 920 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 36.2049 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.9136 _refine.aniso_B[2][2] -2.9136 _refine.aniso_B[3][3] 5.8272 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9512 _refine.correlation_coeff_Fo_to_Fc_free 0.9482 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3hm5 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 112.380 _refine.B_iso_min 17.680 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4IEJ _refine_analyze.Luzzati_coordinate_error_obs 0.251 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 655 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 732 _refine_hist.d_res_high 1.4500 _refine_hist.d_res_low 38.327 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 371 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 23 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 120 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 747 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd 0 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 89 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 882 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 747 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1023 0.920 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.810 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.900 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.4500 _refine_ls_shell.d_res_low 1.5400 _refine_ls_shell.pdbx_total_number_of_bins_used 9 _refine_ls_shell.percent_reflns_obs 99.7800 _refine_ls_shell.number_reflns_R_work 2649 _refine_ls_shell.R_factor_all 0.2237 _refine_ls_shell.R_factor_R_work 0.2231 _refine_ls_shell.R_factor_R_free 0.2340 _refine_ls_shell.percent_reflns_R_free 5.8000 _refine_ls_shell.number_reflns_R_free 163 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2812 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4IEJ _struct.title 'Crystal structure of a DNA methyltransferase 1 associated protein 1 (DMAP1) from Homo sapiens at 1.45 A resolution' _struct.pdbx_descriptor 'DNA methyltransferase 1-associated protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;DNA methylation, chromatin regulator, repressor, Structural Genomics, Joint Center for Structural Genomics, JCSG, Partnership for T-Cell Biology, TCELL, Protein Structure Initiative, PSI-BIOLOGY, TRANSCRIPTION ; _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.entry_id 4IEJ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 20 ? LEU A 28 ? SER A 139 LEU A 147 1 ? 9 HELX_P HELX_P2 2 THR A 34 ? PHE A 48 ? THR A 153 PHE A 167 1 ? 15 HELX_P HELX_P3 3 ARG A 51 ? TYR A 59 ? ARG A 170 TYR A 178 1 ? 9 HELX_P HELX_P4 4 SER A 68 ? ARG A 87 ? SER A 187 ARG A 206 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 301 A HOH 412 1_555 ? ? ? ? ? ? ? 2.170 ? metalc2 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 301 A HOH 471 1_555 ? ? ? ? ? ? ? 2.383 ? metalc3 metalc ? ? A ARG 46 O ? ? ? 1_555 B CA . CA ? ? A ARG 165 A CA 301 1_555 ? ? ? ? ? ? ? 2.416 ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 301 A HOH 473 1_555 ? ? ? ? ? ? ? 2.570 ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 C HOH . O ? ? A CA 301 A HOH 419 1_555 ? ? ? ? ? ? ? 2.654 ? metalc6 metalc ? ? A ASP 49 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 168 A CA 301 1_555 ? ? ? ? ? ? ? 2.943 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE CA A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 46 ? ARG A 165 . ? 1_555 ? 2 AC1 7 ASP A 49 ? ASP A 168 . ? 1_555 ? 3 AC1 7 ASP A 57 ? ASP A 176 . ? 8_665 ? 4 AC1 7 HOH C . ? HOH A 412 . ? 1_555 ? 5 AC1 7 HOH C . ? HOH A 419 . ? 1_555 ? 6 AC1 7 HOH C . ? HOH A 471 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 473 . ? 1_555 ? # _atom_sites.entry_id 4IEJ _atom_sites.fract_transf_matrix[1][1] 0.026772 _atom_sites.fract_transf_matrix[1][2] 0.015457 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030913 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004349 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLY 2 121 ? ? ? A . n A 1 3 LYS 3 122 ? ? ? A . n A 1 4 ASP 4 123 ? ? ? A . n A 1 5 TYR 5 124 ? ? ? A . n A 1 6 PRO 6 125 ? ? ? A . n A 1 7 PHE 7 126 ? ? ? A . n A 1 8 ALA 8 127 ? ? ? A . n A 1 9 ARG 9 128 ? ? ? A . n A 1 10 PHE 10 129 ? ? ? A . n A 1 11 ASN 11 130 ? ? ? A . n A 1 12 LYS 12 131 ? ? ? A . n A 1 13 THR 13 132 ? ? ? A . n A 1 14 VAL 14 133 133 VAL VAL A . n A 1 15 GLN 15 134 134 GLN GLN A . n A 1 16 VAL 16 135 135 VAL VAL A . n A 1 17 PRO 17 136 136 PRO PRO A . n A 1 18 VAL 18 137 137 VAL VAL A . n A 1 19 TYR 19 138 138 TYR TYR A . n A 1 20 SER 20 139 139 SER SER A . n A 1 21 GLU 21 140 140 GLU GLU A . n A 1 22 GLN 22 141 141 GLN GLN A . n A 1 23 GLU 23 142 142 GLU GLU A . n A 1 24 TYR 24 143 143 TYR TYR A . n A 1 25 GLN 25 144 144 GLN GLN A . n A 1 26 LEU 26 145 145 LEU LEU A . n A 1 27 TYR 27 146 146 TYR TYR A . n A 1 28 LEU 28 147 147 LEU LEU A . n A 1 29 HIS 29 148 148 HIS HIS A . n A 1 30 ASP 30 149 149 ASP ASP A . n A 1 31 ASP 31 150 150 ASP ASP A . n A 1 32 ALA 32 151 151 ALA ALA A . n A 1 33 TRP 33 152 152 TRP TRP A . n A 1 34 THR 34 153 153 THR THR A . n A 1 35 LYS 35 154 154 LYS LYS A . n A 1 36 ALA 36 155 155 ALA ALA A . n A 1 37 GLU 37 156 156 GLU GLU A . n A 1 38 THR 38 157 157 THR THR A . n A 1 39 ASP 39 158 158 ASP ASP A . n A 1 40 HIS 40 159 159 HIS HIS A . n A 1 41 LEU 41 160 160 LEU LEU A . n A 1 42 PHE 42 161 161 PHE PHE A . n A 1 43 ASP 43 162 162 ASP ASP A . n A 1 44 LEU 44 163 163 LEU LEU A . n A 1 45 SER 45 164 164 SER SER A . n A 1 46 ARG 46 165 165 ARG ARG A . n A 1 47 ARG 47 166 166 ARG ARG A . n A 1 48 PHE 48 167 167 PHE PHE A . n A 1 49 ASP 49 168 168 ASP ASP A . n A 1 50 LEU 50 169 169 LEU LEU A . n A 1 51 ARG 51 170 170 ARG ARG A . n A 1 52 PHE 52 171 171 PHE PHE A . n A 1 53 VAL 53 172 172 VAL VAL A . n A 1 54 VAL 54 173 173 VAL VAL A . n A 1 55 ILE 55 174 174 ILE ILE A . n A 1 56 HIS 56 175 175 HIS HIS A . n A 1 57 ASP 57 176 176 ASP ASP A . n A 1 58 ARG 58 177 177 ARG ARG A . n A 1 59 TYR 59 178 178 TYR TYR A . n A 1 60 ASP 60 179 179 ASP ASP A . n A 1 61 HIS 61 180 180 HIS HIS A . n A 1 62 GLN 62 181 181 GLN GLN A . n A 1 63 GLN 63 182 182 GLN GLN A . n A 1 64 PHE 64 183 183 PHE PHE A . n A 1 65 LYS 65 184 184 LYS LYS A . n A 1 66 LYS 66 185 185 LYS LYS A . n A 1 67 ARG 67 186 186 ARG ARG A . n A 1 68 SER 68 187 187 SER SER A . n A 1 69 VAL 69 188 188 VAL VAL A . n A 1 70 GLU 70 189 189 GLU GLU A . n A 1 71 ASP 71 190 190 ASP ASP A . n A 1 72 LEU 72 191 191 LEU LEU A . n A 1 73 LYS 73 192 192 LYS LYS A . n A 1 74 GLU 74 193 193 GLU GLU A . n A 1 75 ARG 75 194 194 ARG ARG A . n A 1 76 TYR 76 195 195 TYR TYR A . n A 1 77 TYR 77 196 196 TYR TYR A . n A 1 78 HIS 78 197 197 HIS HIS A . n A 1 79 ILE 79 198 198 ILE ILE A . n A 1 80 CYS 80 199 199 CYS CYS A . n A 1 81 ALA 81 200 200 ALA ALA A . n A 1 82 LYS 82 201 201 LYS LYS A . n A 1 83 LEU 83 202 202 LEU LEU A . n A 1 84 ALA 84 203 203 ALA ALA A . n A 1 85 ASN 85 204 204 ASN ASN A . n A 1 86 VAL 86 205 205 VAL VAL A . n A 1 87 ARG 87 206 206 ARG ARG A . n A 1 88 ALA 88 207 207 ALA ALA A . n A 1 89 VAL 89 208 ? ? ? A . n A 1 90 PRO 90 209 ? ? ? A . n A 1 91 GLY 91 210 ? ? ? A . n A 1 92 THR 92 211 ? ? ? A . n A 1 93 ASP 93 212 ? ? ? A . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for T-Cell Biology' 2 TCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 301 469 CA CA A . C 3 HOH 1 401 470 HOH HOH A . C 3 HOH 2 402 471 HOH HOH A . C 3 HOH 3 403 472 HOH HOH A . C 3 HOH 4 404 473 HOH HOH A . C 3 HOH 5 405 474 HOH HOH A . C 3 HOH 6 406 475 HOH HOH A . C 3 HOH 7 407 476 HOH HOH A . C 3 HOH 8 408 477 HOH HOH A . C 3 HOH 9 409 478 HOH HOH A . C 3 HOH 10 410 479 HOH HOH A . C 3 HOH 11 411 480 HOH HOH A . C 3 HOH 12 412 481 HOH HOH A . C 3 HOH 13 413 482 HOH HOH A . C 3 HOH 14 414 483 HOH HOH A . C 3 HOH 15 415 484 HOH HOH A . C 3 HOH 16 416 485 HOH HOH A . C 3 HOH 17 417 486 HOH HOH A . C 3 HOH 18 418 487 HOH HOH A . C 3 HOH 19 419 488 HOH HOH A . C 3 HOH 20 420 489 HOH HOH A . C 3 HOH 21 421 490 HOH HOH A . C 3 HOH 22 422 491 HOH HOH A . C 3 HOH 23 423 492 HOH HOH A . C 3 HOH 24 424 493 HOH HOH A . C 3 HOH 25 425 494 HOH HOH A . C 3 HOH 26 426 495 HOH HOH A . C 3 HOH 27 427 496 HOH HOH A . C 3 HOH 28 428 497 HOH HOH A . C 3 HOH 29 429 498 HOH HOH A . C 3 HOH 30 430 499 HOH HOH A . C 3 HOH 31 431 500 HOH HOH A . C 3 HOH 32 432 501 HOH HOH A . C 3 HOH 33 433 502 HOH HOH A . C 3 HOH 34 434 503 HOH HOH A . C 3 HOH 35 435 504 HOH HOH A . C 3 HOH 36 436 505 HOH HOH A . C 3 HOH 37 437 506 HOH HOH A . C 3 HOH 38 438 507 HOH HOH A . C 3 HOH 39 439 508 HOH HOH A . C 3 HOH 40 440 509 HOH HOH A . C 3 HOH 41 441 510 HOH HOH A . C 3 HOH 42 442 511 HOH HOH A . C 3 HOH 43 443 512 HOH HOH A . C 3 HOH 44 444 513 HOH HOH A . C 3 HOH 45 445 514 HOH HOH A . C 3 HOH 46 446 515 HOH HOH A . C 3 HOH 47 447 516 HOH HOH A . C 3 HOH 48 448 517 HOH HOH A . C 3 HOH 49 449 518 HOH HOH A . C 3 HOH 50 450 519 HOH HOH A . C 3 HOH 51 451 520 HOH HOH A . C 3 HOH 52 452 521 HOH HOH A . C 3 HOH 53 453 522 HOH HOH A . C 3 HOH 54 454 523 HOH HOH A . C 3 HOH 55 455 524 HOH HOH A . C 3 HOH 56 456 525 HOH HOH A . C 3 HOH 57 457 526 HOH HOH A . C 3 HOH 58 458 527 HOH HOH A . C 3 HOH 59 459 528 HOH HOH A . C 3 HOH 60 460 529 HOH HOH A . C 3 HOH 61 461 530 HOH HOH A . C 3 HOH 62 462 531 HOH HOH A . C 3 HOH 63 463 532 HOH HOH A . C 3 HOH 64 464 533 HOH HOH A . C 3 HOH 65 465 534 HOH HOH A . C 3 HOH 66 466 535 HOH HOH A . C 3 HOH 67 467 536 HOH HOH A . C 3 HOH 68 468 537 HOH HOH A . C 3 HOH 69 469 538 HOH HOH A . C 3 HOH 70 470 539 HOH HOH A . C 3 HOH 71 471 540 HOH HOH A . C 3 HOH 72 472 541 HOH HOH A . C 3 HOH 73 473 542 HOH HOH A . C 3 HOH 74 474 543 HOH HOH A . C 3 HOH 75 475 544 HOH HOH A . C 3 HOH 76 476 545 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 413 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? C HOH . ? A HOH 412 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? C HOH . ? A HOH 471 ? 1_555 84.1 ? 2 O ? C HOH . ? A HOH 412 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A ARG 46 ? A ARG 165 ? 1_555 75.2 ? 3 O ? C HOH . ? A HOH 471 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A ARG 46 ? A ARG 165 ? 1_555 155.9 ? 4 O ? C HOH . ? A HOH 412 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? C HOH . ? A HOH 473 ? 1_555 132.4 ? 5 O ? C HOH . ? A HOH 471 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? C HOH . ? A HOH 473 ? 1_555 68.2 ? 6 O ? A ARG 46 ? A ARG 165 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? C HOH . ? A HOH 473 ? 1_555 135.6 ? 7 O ? C HOH . ? A HOH 412 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? C HOH . ? A HOH 419 ? 1_555 152.6 ? 8 O ? C HOH . ? A HOH 471 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? C HOH . ? A HOH 419 ? 1_555 120.3 ? 9 O ? A ARG 46 ? A ARG 165 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? C HOH . ? A HOH 419 ? 1_555 78.0 ? 10 O ? C HOH . ? A HOH 473 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? C HOH . ? A HOH 419 ? 1_555 72.6 ? 11 O ? C HOH . ? A HOH 412 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 49 ? A ASP 168 ? 1_555 97.8 ? 12 O ? C HOH . ? A HOH 471 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 49 ? A ASP 168 ? 1_555 106.1 ? 13 O ? A ARG 46 ? A ARG 165 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 49 ? A ASP 168 ? 1_555 89.2 ? 14 O ? C HOH . ? A HOH 473 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 49 ? A ASP 168 ? 1_555 57.4 ? 15 O ? C HOH . ? A HOH 419 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 49 ? A ASP 168 ? 1_555 87.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-02 2 'Structure model' 1 1 2013-01-09 3 'Structure model' 1 2 2013-01-16 4 'Structure model' 1 3 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 4.3298 _pdbx_refine_tls.origin_y 24.2719 _pdbx_refine_tls.origin_z 6.9730 _pdbx_refine_tls.T[1][1] -0.0424 _pdbx_refine_tls.T[2][2] -0.0414 _pdbx_refine_tls.T[3][3] -0.1080 _pdbx_refine_tls.T[1][2] 0.0191 _pdbx_refine_tls.T[1][3] -0.0041 _pdbx_refine_tls.T[2][3] -0.0109 _pdbx_refine_tls.L[1][1] 1.1018 _pdbx_refine_tls.L[2][2] 2.1430 _pdbx_refine_tls.L[3][3] 6.3766 _pdbx_refine_tls.L[1][2] -0.0185 _pdbx_refine_tls.L[1][3] 0.3331 _pdbx_refine_tls.L[2][3] -0.0450 _pdbx_refine_tls.S[1][1] -0.0223 _pdbx_refine_tls.S[2][2] -0.0648 _pdbx_refine_tls.S[3][3] 0.0871 _pdbx_refine_tls.S[1][2] -0.0360 _pdbx_refine_tls.S[1][3] -0.0515 _pdbx_refine_tls.S[2][3] -0.0139 _pdbx_refine_tls.S[2][1] 0.1197 _pdbx_refine_tls.S[3][1] -0.1000 _pdbx_refine_tls.S[3][2] -0.4342 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 133 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 207 _pdbx_refine_tls_group.selection_details '{ A|133 - A|207 }' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MOLREP . ? ? ? ? phasing ? ? ? 4 XSCALE 'March 15, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4IEJ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (121-212) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLY 121 ? A GLY 2 3 1 Y 1 A LYS 122 ? A LYS 3 4 1 Y 1 A ASP 123 ? A ASP 4 5 1 Y 1 A TYR 124 ? A TYR 5 6 1 Y 1 A PRO 125 ? A PRO 6 7 1 Y 1 A PHE 126 ? A PHE 7 8 1 Y 1 A ALA 127 ? A ALA 8 9 1 Y 1 A ARG 128 ? A ARG 9 10 1 Y 1 A PHE 129 ? A PHE 10 11 1 Y 1 A ASN 130 ? A ASN 11 12 1 Y 1 A LYS 131 ? A LYS 12 13 1 Y 1 A THR 132 ? A THR 13 14 1 Y 1 A VAL 208 ? A VAL 89 15 1 Y 1 A PRO 209 ? A PRO 90 16 1 Y 1 A GLY 210 ? A GLY 91 17 1 Y 1 A THR 211 ? A THR 92 18 1 Y 1 A ASP 212 ? A ASP 93 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH #