data_4IGZ # _entry.id 4IGZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.283 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4IGZ RCSB RCSB076739 WWPDB D_1000076739 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2017-08-02 _pdbx_database_PDB_obs_spr.pdb_id 5VEI _pdbx_database_PDB_obs_spr.replace_pdb_id 4IGZ _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.entry_id 4IGZ _pdbx_database_status.status_code OBS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-12-18 _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, Y.' 1 'Tempel, W.' 2 'Huang, H.' 3 'Gu, J.' 4 'Liu, K.' 5 'El Bakkouri, M.' 6 'Sidhu, S.S.' 7 'Bountra, C.' 8 'Arrowsmith, C.H.' 9 'Edwards, A.M.' 10 'Min, J.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.id primary _citation.title 'Crystal structure of the SH3 domain of human sorbin and SH3 domain-containing protein 2' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Liu, Y.' 1 primary 'Tempel, W.' 2 primary 'Huang, H.' 3 primary 'Gu, J.' 4 primary 'Liu, K.' 5 primary 'El Bakkouri, M.' 6 primary 'Sidhu, S.S.' 7 primary 'Bountra, C.' 8 primary 'Arrowsmith, C.H.' 9 primary 'Edwards, A.M.' 10 primary 'Min, J.' 11 # _cell.entry_id 4IGZ _cell.length_a 46.201 _cell.length_b 27.495 _cell.length_c 58.846 _cell.angle_alpha 90.000 _cell.angle_beta 101.010 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IGZ _symmetry.space_group_name_H-M 'I 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 5 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sorbin and SH3 domain-containing protein 2' 12305.836 1 ? ? 'SH3 domain (UNP residues 866-921)' ? 2 non-polymer syn 'UNKNOWN ATOM OR ION' ? 6 ? ? ? ? 3 water nat water 18.015 50 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Arg/Abl-interacting protein 2, ArgBP2, Sorbin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKIEEHHHHHHSSGRENLYFQGGAAQPAMAQGALLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGI FPISYVEKLTGSAAALRTGEAYLRYVDAAA ; _entity_poly.pdbx_seq_one_letter_code_can ;MKIEEHHHHHHSSGRENLYFQGGAAQPAMAQGALLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGI FPISYVEKLTGSAAALRTGEAYLRYVDAAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 ILE n 1 4 GLU n 1 5 GLU n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 SER n 1 13 SER n 1 14 GLY n 1 15 ARG n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 GLY n 1 23 GLY n 1 24 ALA n 1 25 ALA n 1 26 GLN n 1 27 PRO n 1 28 ALA n 1 29 MET n 1 30 ALA n 1 31 GLN n 1 32 GLY n 1 33 ALA n 1 34 LEU n 1 35 LEU n 1 36 PRO n 1 37 ALA n 1 38 LYS n 1 39 ALA n 1 40 VAL n 1 41 TYR n 1 42 ASP n 1 43 PHE n 1 44 LYS n 1 45 ALA n 1 46 GLN n 1 47 THR n 1 48 SER n 1 49 LYS n 1 50 GLU n 1 51 LEU n 1 52 SER n 1 53 PHE n 1 54 LYS n 1 55 LYS n 1 56 GLY n 1 57 ASP n 1 58 THR n 1 59 VAL n 1 60 TYR n 1 61 ILE n 1 62 LEU n 1 63 ARG n 1 64 LYS n 1 65 ILE n 1 66 ASP n 1 67 GLN n 1 68 ASN n 1 69 TRP n 1 70 TYR n 1 71 GLU n 1 72 GLY n 1 73 GLU n 1 74 HIS n 1 75 HIS n 1 76 GLY n 1 77 ARG n 1 78 VAL n 1 79 GLY n 1 80 ILE n 1 81 PHE n 1 82 PRO n 1 83 ILE n 1 84 SER n 1 85 TYR n 1 86 VAL n 1 87 GLU n 1 88 LYS n 1 89 LEU n 1 90 THR n 1 91 GLY n 1 92 SER n 1 93 ALA n 1 94 ALA n 1 95 ALA n 1 96 LEU n 1 97 ARG n 1 98 THR n 1 99 GLY n 1 100 GLU n 1 101 ALA n 1 102 TYR n 1 103 LEU n 1 104 ARG n 1 105 TYR n 1 106 VAL n 1 107 ASP n 1 108 ALA n 1 109 ALA n 1 110 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SORBS2, ARGBP2, KIAA0777' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)-V2R-pRARE2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified pHH0239/6His/TEV vector' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SRBS2_HUMAN _struct_ref.pdbx_db_accession O94875 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLT _struct_ref.pdbx_align_begin 866 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4IGZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 35 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 90 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O94875 _struct_ref_seq.db_align_beg 866 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 921 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 866 _struct_ref_seq.pdbx_auth_seq_align_end 921 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4IGZ MET A 1 ? UNP O94875 ? ? 'EXPRESSION TAG' 832 1 1 4IGZ LYS A 2 ? UNP O94875 ? ? 'EXPRESSION TAG' 833 2 1 4IGZ ILE A 3 ? UNP O94875 ? ? 'EXPRESSION TAG' 834 3 1 4IGZ GLU A 4 ? UNP O94875 ? ? 'EXPRESSION TAG' 835 4 1 4IGZ GLU A 5 ? UNP O94875 ? ? 'EXPRESSION TAG' 836 5 1 4IGZ HIS A 6 ? UNP O94875 ? ? 'EXPRESSION TAG' 837 6 1 4IGZ HIS A 7 ? UNP O94875 ? ? 'EXPRESSION TAG' 838 7 1 4IGZ HIS A 8 ? UNP O94875 ? ? 'EXPRESSION TAG' 839 8 1 4IGZ HIS A 9 ? UNP O94875 ? ? 'EXPRESSION TAG' 840 9 1 4IGZ HIS A 10 ? UNP O94875 ? ? 'EXPRESSION TAG' 841 10 1 4IGZ HIS A 11 ? UNP O94875 ? ? 'EXPRESSION TAG' 842 11 1 4IGZ SER A 12 ? UNP O94875 ? ? 'EXPRESSION TAG' 843 12 1 4IGZ SER A 13 ? UNP O94875 ? ? 'EXPRESSION TAG' 844 13 1 4IGZ GLY A 14 ? UNP O94875 ? ? 'EXPRESSION TAG' 845 14 1 4IGZ ARG A 15 ? UNP O94875 ? ? 'EXPRESSION TAG' 846 15 1 4IGZ GLU A 16 ? UNP O94875 ? ? 'EXPRESSION TAG' 847 16 1 4IGZ ASN A 17 ? UNP O94875 ? ? 'EXPRESSION TAG' 848 17 1 4IGZ LEU A 18 ? UNP O94875 ? ? 'EXPRESSION TAG' 849 18 1 4IGZ TYR A 19 ? UNP O94875 ? ? 'EXPRESSION TAG' 850 19 1 4IGZ PHE A 20 ? UNP O94875 ? ? 'EXPRESSION TAG' 851 20 1 4IGZ GLN A 21 ? UNP O94875 ? ? 'EXPRESSION TAG' 852 21 1 4IGZ GLY A 22 ? UNP O94875 ? ? 'EXPRESSION TAG' 853 22 1 4IGZ GLY A 23 ? UNP O94875 ? ? 'EXPRESSION TAG' 854 23 1 4IGZ ALA A 24 ? UNP O94875 ? ? 'EXPRESSION TAG' 855 24 1 4IGZ ALA A 25 ? UNP O94875 ? ? 'EXPRESSION TAG' 856 25 1 4IGZ GLN A 26 ? UNP O94875 ? ? 'EXPRESSION TAG' 857 26 1 4IGZ PRO A 27 ? UNP O94875 ? ? 'EXPRESSION TAG' 858 27 1 4IGZ ALA A 28 ? UNP O94875 ? ? 'EXPRESSION TAG' 859 28 1 4IGZ MET A 29 ? UNP O94875 ? ? 'EXPRESSION TAG' 860 29 1 4IGZ ALA A 30 ? UNP O94875 ? ? 'EXPRESSION TAG' 861 30 1 4IGZ GLN A 31 ? UNP O94875 ? ? 'EXPRESSION TAG' 862 31 1 4IGZ GLY A 32 ? UNP O94875 ? ? 'EXPRESSION TAG' 863 32 1 4IGZ ALA A 33 ? UNP O94875 ? ? 'EXPRESSION TAG' 864 33 1 4IGZ LEU A 34 ? UNP O94875 ? ? 'EXPRESSION TAG' 865 34 1 4IGZ GLY A 91 ? UNP O94875 ? ? 'EXPRESSION TAG' 922 35 1 4IGZ SER A 92 ? UNP O94875 ? ? 'EXPRESSION TAG' 923 36 1 4IGZ ALA A 93 ? UNP O94875 ? ? 'EXPRESSION TAG' 924 37 1 4IGZ ALA A 94 ? UNP O94875 ? ? 'EXPRESSION TAG' 925 38 1 4IGZ ALA A 95 ? UNP O94875 ? ? 'EXPRESSION TAG' 926 39 1 4IGZ LEU A 96 ? UNP O94875 ? ? 'EXPRESSION TAG' 927 40 1 4IGZ ARG A 97 ? UNP O94875 ? ? 'EXPRESSION TAG' 928 41 1 4IGZ THR A 98 ? UNP O94875 ? ? 'EXPRESSION TAG' 929 42 1 4IGZ GLY A 99 ? UNP O94875 ? ? 'EXPRESSION TAG' 930 43 1 4IGZ GLU A 100 ? UNP O94875 ? ? 'EXPRESSION TAG' 931 44 1 4IGZ ALA A 101 ? UNP O94875 ? ? 'EXPRESSION TAG' 932 45 1 4IGZ TYR A 102 ? UNP O94875 ? ? 'EXPRESSION TAG' 933 46 1 4IGZ LEU A 103 ? UNP O94875 ? ? 'EXPRESSION TAG' 934 47 1 4IGZ ARG A 104 ? UNP O94875 ? ? 'EXPRESSION TAG' 935 48 1 4IGZ TYR A 105 ? UNP O94875 ? ? 'EXPRESSION TAG' 936 49 1 4IGZ VAL A 106 ? UNP O94875 ? ? 'EXPRESSION TAG' 937 50 1 4IGZ ASP A 107 ? UNP O94875 ? ? 'EXPRESSION TAG' 938 51 1 4IGZ ALA A 108 ? UNP O94875 ? ? 'EXPRESSION TAG' 939 52 1 4IGZ ALA A 109 ? UNP O94875 ? ? 'EXPRESSION TAG' 940 53 1 4IGZ ALA A 110 ? UNP O94875 ? ? 'EXPRESSION TAG' 941 54 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4IGZ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 16.99 _exptl_crystal.density_Matthews 1.49 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '28% PEG-2000, 0.1 M Bis-Tris, pH 6.5, vapor diffusion, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-12-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97911 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.97911 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 4IGZ _reflns.d_resolution_high 1.330 _reflns.d_resolution_low 39.524 _reflns.number_all 16885 _reflns.number_obs 16885 _reflns.pdbx_netI_over_sigmaI 13.600 _reflns.pdbx_Rsym_value 0.050 _reflns.pdbx_redundancy 4.000 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.330 1.400 ? 9772 ? 0.958 0.800 0.958 ? 4.000 ? 2468 99.900 1 1 1.400 1.490 ? 9183 ? 0.625 1.200 0.625 ? 4.000 ? 2298 99.900 2 1 1.490 1.590 ? 8716 ? 0.362 2.100 0.362 ? 4.000 ? 2181 99.600 3 1 1.590 1.720 ? 8206 ? 0.210 3.700 0.210 ? 4.000 ? 2038 99.800 4 1 1.720 1.880 ? 7437 ? 0.116 6.600 0.116 ? 4.000 ? 1849 99.800 5 1 1.880 2.100 ? 6724 ? 0.061 11.900 0.061 ? 4.000 ? 1701 99.800 6 1 2.100 2.430 ? 5958 ? 0.044 15.500 0.044 ? 3.900 ? 1516 99.900 7 1 2.430 2.970 ? 4918 ? 0.036 17.400 0.036 ? 3.900 ? 1269 99.700 8 1 2.970 4.210 ? 3898 ? 0.024 23.000 0.024 ? 3.900 ? 1000 99.600 9 1 4.210 39.524 ? 2143 ? 0.022 25.800 0.022 ? 3.800 ? 565 98.500 10 1 # _refine.entry_id 4IGZ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.3300 _refine.ls_d_res_low 39.5200 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6600 _refine.ls_number_reflns_obs 16884 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY. ARP/WARP, COOT and the MOLPROBITY server were also used during refinement. The authors note a significant discrepancy between the number of observed amino acid residues and the assumed length of the crystallized polypeptide. The authors observed discontinuity in the electron density at the site of the C-ALPHA atom of residue Gly-922 of the current model. Nearby difference density suggests the presence of an alternate backbone conformation at this position. (Weak) difference density further suggests that some additional residues beyond the termini of the current model are disordered. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1621 _refine.ls_R_factor_R_work 0.1593 _refine.ls_wR_factor_R_work 0.1535 _refine.ls_R_factor_R_free 0.2215 _refine.ls_wR_factor_R_free 0.2105 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 818 _refine.ls_number_reflns_R_work 16066 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 23.3337 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.6100 _refine.aniso_B[2][2] -1.2300 _refine.aniso_B[3][3] 1.5400 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.9700 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9770 _refine.correlation_coeff_Fo_to_Fc_free 0.9550 _refine.overall_SU_R_Cruickshank_DPI 0.0556 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free 0.0611 _refine.pdbx_overall_ESU_R 0.0560 _refine.pdbx_overall_ESU_R_Free 0.0610 _refine.overall_SU_ML 0.0570 _refine.overall_SU_B 3.2430 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 3c0c' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8009 _refine.B_iso_max 154.740 _refine.B_iso_min 9.220 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_diffrn_id 1 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 601 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 657 _refine_hist.d_res_high 1.3300 _refine_hist.d_res_low 39.5200 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 627 0.016 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 599 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 850 1.735 1.953 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1377 0.858 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 78 6.654 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 28 33.360 23.571 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 105 11.384 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 3 11.670 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 93 0.105 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 704 0.010 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 147 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 309 4.051 1.929 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 306 3.507 1.911 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 385 4.655 2.904 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1224 3.691 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 13 43.092 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 1254 15.885 5.000 ? ? # _refine_ls_shell.d_res_high 1.3300 _refine_ls_shell.d_res_low 1.3650 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.9200 _refine_ls_shell.number_reflns_R_work 1193 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2880 _refine_ls_shell.R_factor_R_free 0.3020 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 49 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1242 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4IGZ _struct.title 'Crystal structure of the SH3 domain of human sorbin and SH3 domain-containing protein 2' _struct.pdbx_descriptor 'Sorbin and SH3 domain-containing protein 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IGZ _struct_keywords.text 'Structural Genomics Consortium, SGC, SH3, Src Homology 3 domain, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 92 ? ARG A 97 ? SER A 923 ARG A 928 5 ? 6 HELX_P HELX_P2 2 GLY A 99 ? VAL A 106 ? GLY A 930 VAL A 937 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 77 ? PRO A 82 ? ARG A 908 PRO A 913 A 2 TRP A 69 ? HIS A 74 ? TRP A 900 HIS A 905 A 3 THR A 58 ? LYS A 64 ? THR A 889 LYS A 895 A 4 LEU A 35 ? ALA A 39 ? LEU A 866 ALA A 870 A 5 VAL A 86 ? LYS A 88 ? VAL A 917 LYS A 919 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 81 ? O PHE A 912 N TYR A 70 ? N TYR A 901 A 2 3 O GLU A 71 ? O GLU A 902 N ARG A 63 ? N ARG A 894 A 3 4 O VAL A 59 ? O VAL A 890 N ALA A 37 ? N ALA A 868 A 4 5 N LYS A 38 ? N LYS A 869 O GLU A 87 ? O GLU A 918 # _atom_sites.entry_id 4IGZ _atom_sites.fract_transf_matrix[1][1] 0.021645 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004211 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.036370 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017312 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 832 ? ? ? A . n A 1 2 LYS 2 833 ? ? ? A . n A 1 3 ILE 3 834 ? ? ? A . n A 1 4 GLU 4 835 ? ? ? A . n A 1 5 GLU 5 836 ? ? ? A . n A 1 6 HIS 6 837 ? ? ? A . n A 1 7 HIS 7 838 ? ? ? A . n A 1 8 HIS 8 839 ? ? ? A . n A 1 9 HIS 9 840 ? ? ? A . n A 1 10 HIS 10 841 ? ? ? A . n A 1 11 HIS 11 842 ? ? ? A . n A 1 12 SER 12 843 ? ? ? A . n A 1 13 SER 13 844 ? ? ? A . n A 1 14 GLY 14 845 ? ? ? A . n A 1 15 ARG 15 846 ? ? ? A . n A 1 16 GLU 16 847 ? ? ? A . n A 1 17 ASN 17 848 ? ? ? A . n A 1 18 LEU 18 849 ? ? ? A . n A 1 19 TYR 19 850 ? ? ? A . n A 1 20 PHE 20 851 ? ? ? A . n A 1 21 GLN 21 852 ? ? ? A . n A 1 22 GLY 22 853 ? ? ? A . n A 1 23 GLY 23 854 ? ? ? A . n A 1 24 ALA 24 855 ? ? ? A . n A 1 25 ALA 25 856 ? ? ? A . n A 1 26 GLN 26 857 ? ? ? A . n A 1 27 PRO 27 858 ? ? ? A . n A 1 28 ALA 28 859 ? ? ? A . n A 1 29 MET 29 860 ? ? ? A . n A 1 30 ALA 30 861 ? ? ? A . n A 1 31 GLN 31 862 ? ? ? A . n A 1 32 GLY 32 863 ? ? ? A . n A 1 33 ALA 33 864 864 ALA ALA A . n A 1 34 LEU 34 865 865 LEU LEU A . n A 1 35 LEU 35 866 866 LEU LEU A . n A 1 36 PRO 36 867 867 PRO PRO A . n A 1 37 ALA 37 868 868 ALA ALA A . n A 1 38 LYS 38 869 869 LYS LYS A . n A 1 39 ALA 39 870 870 ALA ALA A . n A 1 40 VAL 40 871 871 VAL VAL A . n A 1 41 TYR 41 872 872 TYR TYR A . n A 1 42 ASP 42 873 873 ASP ASP A . n A 1 43 PHE 43 874 874 PHE PHE A . n A 1 44 LYS 44 875 875 LYS LYS A . n A 1 45 ALA 45 876 876 ALA ALA A . n A 1 46 GLN 46 877 877 GLN GLN A . n A 1 47 THR 47 878 878 THR THR A . n A 1 48 SER 48 879 879 SER SER A . n A 1 49 LYS 49 880 880 LYS LYS A . n A 1 50 GLU 50 881 881 GLU GLU A . n A 1 51 LEU 51 882 882 LEU LEU A . n A 1 52 SER 52 883 883 SER SER A . n A 1 53 PHE 53 884 884 PHE PHE A . n A 1 54 LYS 54 885 885 LYS LYS A . n A 1 55 LYS 55 886 886 LYS LYS A . n A 1 56 GLY 56 887 887 GLY GLY A . n A 1 57 ASP 57 888 888 ASP ASP A . n A 1 58 THR 58 889 889 THR THR A . n A 1 59 VAL 59 890 890 VAL VAL A . n A 1 60 TYR 60 891 891 TYR TYR A . n A 1 61 ILE 61 892 892 ILE ILE A . n A 1 62 LEU 62 893 893 LEU LEU A . n A 1 63 ARG 63 894 894 ARG ARG A . n A 1 64 LYS 64 895 895 LYS LYS A . n A 1 65 ILE 65 896 896 ILE ILE A . n A 1 66 ASP 66 897 897 ASP ASP A . n A 1 67 GLN 67 898 898 GLN GLN A . n A 1 68 ASN 68 899 899 ASN ASN A . n A 1 69 TRP 69 900 900 TRP TRP A . n A 1 70 TYR 70 901 901 TYR TYR A . n A 1 71 GLU 71 902 902 GLU GLU A . n A 1 72 GLY 72 903 903 GLY GLY A . n A 1 73 GLU 73 904 904 GLU GLU A . n A 1 74 HIS 74 905 905 HIS HIS A . n A 1 75 HIS 75 906 906 HIS HIS A . n A 1 76 GLY 76 907 907 GLY GLY A . n A 1 77 ARG 77 908 908 ARG ARG A . n A 1 78 VAL 78 909 909 VAL VAL A . n A 1 79 GLY 79 910 910 GLY GLY A . n A 1 80 ILE 80 911 911 ILE ILE A . n A 1 81 PHE 81 912 912 PHE PHE A . n A 1 82 PRO 82 913 913 PRO PRO A . n A 1 83 ILE 83 914 914 ILE ILE A . n A 1 84 SER 84 915 915 SER SER A . n A 1 85 TYR 85 916 916 TYR TYR A . n A 1 86 VAL 86 917 917 VAL VAL A . n A 1 87 GLU 87 918 918 GLU GLU A . n A 1 88 LYS 88 919 919 LYS LYS A . n A 1 89 LEU 89 920 920 LEU LEU A . n A 1 90 THR 90 921 921 THR THR A . n A 1 91 GLY 91 922 922 GLY GLY A . n A 1 92 SER 92 923 923 SER SER A . n A 1 93 ALA 93 924 924 ALA ALA A . n A 1 94 ALA 94 925 925 ALA ALA A . n A 1 95 ALA 95 926 926 ALA ALA A . n A 1 96 LEU 96 927 927 LEU LEU A . n A 1 97 ARG 97 928 928 ARG ARG A . n A 1 98 THR 98 929 929 THR THR A . n A 1 99 GLY 99 930 930 GLY GLY A . n A 1 100 GLU 100 931 931 GLU GLU A . n A 1 101 ALA 101 932 932 ALA ALA A . n A 1 102 TYR 102 933 933 TYR TYR A . n A 1 103 LEU 103 934 934 LEU LEU A . n A 1 104 ARG 104 935 935 ARG ARG A . n A 1 105 TYR 105 936 936 TYR TYR A . n A 1 106 VAL 106 937 937 VAL VAL A . n A 1 107 ASP 107 938 938 ASP ASP A . n A 1 108 ALA 108 939 939 ALA ALA A . n A 1 109 ALA 109 940 ? ? ? A . n A 1 110 ALA 110 941 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX 1 1001 1001 UNX UNX A . C 2 UNX 1 1002 1002 UNX UNX A . D 2 UNX 1 1003 1003 UNX UNX A . E 2 UNX 1 1004 1004 UNX UNX A . F 2 UNX 1 1005 1005 UNX UNX A . G 2 UNX 1 1006 1006 UNX UNX A . H 3 HOH 1 1101 1101 HOH HOH A . H 3 HOH 2 1102 1102 HOH HOH A . H 3 HOH 3 1103 1103 HOH HOH A . H 3 HOH 4 1104 1104 HOH HOH A . H 3 HOH 5 1105 1105 HOH HOH A . H 3 HOH 6 1106 1106 HOH HOH A . H 3 HOH 7 1107 1107 HOH HOH A . H 3 HOH 8 1108 1108 HOH HOH A . H 3 HOH 9 1109 1109 HOH HOH A . H 3 HOH 10 1110 1110 HOH HOH A . H 3 HOH 11 1111 1111 HOH HOH A . H 3 HOH 12 1112 1112 HOH HOH A . H 3 HOH 13 1113 1113 HOH HOH A . H 3 HOH 14 1114 1114 HOH HOH A . H 3 HOH 15 1115 1115 HOH HOH A . H 3 HOH 16 1116 1116 HOH HOH A . H 3 HOH 17 1117 1117 HOH HOH A . H 3 HOH 18 1118 1118 HOH HOH A . H 3 HOH 19 1119 1119 HOH HOH A . H 3 HOH 20 1120 1120 HOH HOH A . H 3 HOH 21 1121 1121 HOH HOH A . H 3 HOH 22 1122 1122 HOH HOH A . H 3 HOH 23 1123 1123 HOH HOH A . H 3 HOH 24 1124 1124 HOH HOH A . H 3 HOH 25 1125 1125 HOH HOH A . H 3 HOH 26 1126 1126 HOH HOH A . H 3 HOH 27 1127 1127 HOH HOH A . H 3 HOH 28 1128 1130 HOH HOH A . H 3 HOH 29 1129 1131 HOH HOH A . H 3 HOH 30 1130 1132 HOH HOH A . H 3 HOH 31 1131 1133 HOH HOH A . H 3 HOH 32 1132 1134 HOH HOH A . H 3 HOH 33 1133 1135 HOH HOH A . H 3 HOH 34 1134 1136 HOH HOH A . H 3 HOH 35 1135 1137 HOH HOH A . H 3 HOH 36 1136 1138 HOH HOH A . H 3 HOH 37 1137 1139 HOH HOH A . H 3 HOH 38 1138 1140 HOH HOH A . H 3 HOH 39 1139 1141 HOH HOH A . H 3 HOH 40 1140 1142 HOH HOH A . H 3 HOH 41 1141 1143 HOH HOH A . H 3 HOH 42 1142 1145 HOH HOH A . H 3 HOH 43 1143 1146 HOH HOH A . H 3 HOH 44 1144 1147 HOH HOH A . H 3 HOH 45 1145 1148 HOH HOH A . H 3 HOH 46 1146 1149 HOH HOH A . H 3 HOH 47 1147 1150 HOH HOH A . H 3 HOH 48 1148 1151 HOH HOH A . H 3 HOH 49 1149 1152 HOH HOH A . H 3 HOH 50 1150 1153 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-03-27 2 'Structure model' 1 1 2017-08-02 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_PDB_obs_spr 2 2 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.status_code' 2 2 'Structure model' '_pdbx_database_status.status_code_sf' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'August 3, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 894 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 894 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 894 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.32 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.02 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 921 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -145.10 _pdbx_validate_torsion.psi -10.97 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 919 ? NZ ? A LYS 88 NZ 2 1 Y 1 A ARG 935 ? CD ? A ARG 104 CD 3 1 Y 1 A ARG 935 ? NE ? A ARG 104 NE 4 1 Y 1 A ARG 935 ? CZ ? A ARG 104 CZ 5 1 Y 1 A ARG 935 ? NH1 ? A ARG 104 NH1 6 1 Y 1 A ARG 935 ? NH2 ? A ARG 104 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 832 ? A MET 1 2 1 Y 1 A LYS 833 ? A LYS 2 3 1 Y 1 A ILE 834 ? A ILE 3 4 1 Y 1 A GLU 835 ? A GLU 4 5 1 Y 1 A GLU 836 ? A GLU 5 6 1 Y 1 A HIS 837 ? A HIS 6 7 1 Y 1 A HIS 838 ? A HIS 7 8 1 Y 1 A HIS 839 ? A HIS 8 9 1 Y 1 A HIS 840 ? A HIS 9 10 1 Y 1 A HIS 841 ? A HIS 10 11 1 Y 1 A HIS 842 ? A HIS 11 12 1 Y 1 A SER 843 ? A SER 12 13 1 Y 1 A SER 844 ? A SER 13 14 1 Y 1 A GLY 845 ? A GLY 14 15 1 Y 1 A ARG 846 ? A ARG 15 16 1 Y 1 A GLU 847 ? A GLU 16 17 1 Y 1 A ASN 848 ? A ASN 17 18 1 Y 1 A LEU 849 ? A LEU 18 19 1 Y 1 A TYR 850 ? A TYR 19 20 1 Y 1 A PHE 851 ? A PHE 20 21 1 Y 1 A GLN 852 ? A GLN 21 22 1 Y 1 A GLY 853 ? A GLY 22 23 1 Y 1 A GLY 854 ? A GLY 23 24 1 Y 1 A ALA 855 ? A ALA 24 25 1 Y 1 A ALA 856 ? A ALA 25 26 1 Y 1 A GLN 857 ? A GLN 26 27 1 Y 1 A PRO 858 ? A PRO 27 28 1 Y 1 A ALA 859 ? A ALA 28 29 1 Y 1 A MET 860 ? A MET 29 30 1 Y 1 A ALA 861 ? A ALA 30 31 1 Y 1 A GLN 862 ? A GLN 31 32 1 Y 1 A GLY 863 ? A GLY 32 33 1 Y 1 A ALA 940 ? A ALA 109 34 1 Y 1 A ALA 941 ? A ALA 110 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN ATOM OR ION' UNX 3 water HOH #