HEADER TRANSCRIPTION/DNA 19-DEC-12 4IHT TITLE CRYSTAL STRUCTURE OF BENM_DBD/BENA SITE 1 DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1-87; COMPND 5 SYNONYM: BEN AND CAT OPERON TRANSCRIPTIONAL REGULATOR, COMPND 6 TRANSCRIPTIONAL REGULATOR BENM DNA BINDING DOMAIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BENA SITE 1 DNA; COMPND 10 CHAIN: E, G; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: BENA SITE 1 DNA - COMPLEMENT; COMPND 14 CHAIN: F, H; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP.; SOURCE 3 ORGANISM_TAXID: 62977; SOURCE 4 STRAIN: ADP1; SOURCE 5 GENE: ACIAD1435, BENM, BENR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC DNA PURCHASED FROM IDT; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: SYNTHETIC DNA PURCHASED FROM IDT KEYWDS WHTH, HTH, TRANSCRIPTIONAL REGULATOR, BENA PROMOTER SITE 1, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.ALANAZI,C.MOMANY,E.L.NEIDLE REVDAT 5 20-SEP-23 4IHT 1 SEQADV REVDAT 4 15-NOV-17 4IHT 1 REMARK REVDAT 3 15-JAN-14 4IHT 1 JRNL REVDAT 2 02-OCT-13 4IHT 1 JRNL REVDAT 1 10-JUL-13 4IHT 0 JRNL AUTH A.M.ALANAZI,E.L.NEIDLE,C.MOMANY JRNL TITL THE DNA-BINDING DOMAIN OF BENM REVEALS THE STRUCTURAL BASIS JRNL TITL 2 FOR THE RECOGNITION OF A T-N11-A SEQUENCE MOTIF BY LYSR-TYPE JRNL TITL 3 TRANSCRIPTIONAL REGULATORS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1995 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 24100318 JRNL DOI 10.1107/S0907444913017320 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.H.CRAVEN,O.C.EZEZIKA,S.HADDAD,R.A.HALL,C.MOMANY,E.L.NEIDLE REMARK 1 TITL INDUCER RESPONSES OF BENM, A LYSR-TYPE TRANSCRIPTIONAL REMARK 1 TITL 2 REGULATOR FROM ACINETOBACTER BAYLYI ADP1. REMARK 1 REF MOL.MICROBIOL. V.2(4) 881 2009 REMARK 1 REFN ISSN 0950-382X REMARK 1 PMID 19400783 REMARK 1 REFERENCE 2 REMARK 1 AUTH O.C.EZEZIKA,S.HADDAD,T.J.CLARK,E.L.NEIDLE,C.MOMANY REMARK 1 TITL DISTINCT EFFECTOR-BINDING SITES ENABLE SYNERGISTIC REMARK 1 TITL 2 TRANSCRIPTIONAL ACTIVATION BY BENM, A LYSR-TYPE REGULATOR REMARK 1 REF J.MOL.BIOL. V.7(3) 616 2007 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 17291527 REMARK 1 REFERENCE 3 REMARK 1 AUTH O.C.EZEZIKA,S.HADDAD,E.L.NEIDLE,C.MOMANY REMARK 1 TITL OLIGOMERIZATION OF BENM, A LYSR-TYPE TRANSCRIPTIONAL REMARK 1 TITL 2 REGULATOR: STRUCTURAL BASIS FOR THE AGGREGATION OF PROTEINS REMARK 1 TITL 3 IN THIS FAMILY.R REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V.T 5) 361 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17565172 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 15998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 820 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1039 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2872 REMARK 3 NUCLEIC ACID ATOMS : 2038 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.54000 REMARK 3 B22 (A**2) : -2.54000 REMARK 3 B33 (A**2) : -6.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.437 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.348 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.265 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5209 ; 0.006 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 4088 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7840 ; 1.143 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9412 ; 0.842 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 351 ; 5.289 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;33.475 ;23.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;17.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.114 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 836 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4425 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1003 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 4 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1417 ; 0.320 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1417 ; 8.320 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 B (A): 1453 ; 0.330 ; 0.500 REMARK 3 MEDIUM THERMAL 2 B (A**2): 1453 ; 7.490 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : E G REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 E (A): 795 ; 0.360 ; 0.500 REMARK 3 MEDIUM THERMAL 3 E (A**2): 795 ; 5.560 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : F H REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 F (A): 798 ; 0.320 ; 0.500 REMARK 3 MEDIUM THERMAL 4 F (A**2): 798 ; 5.440 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0757 -53.1580 -8.0770 REMARK 3 T TENSOR REMARK 3 T11: 0.1274 T22: 0.1280 REMARK 3 T33: 0.1438 T12: -0.0134 REMARK 3 T13: -0.1079 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 5.6548 L22: 6.3136 REMARK 3 L33: 7.3772 L12: -2.2208 REMARK 3 L13: 1.3676 L23: 3.4975 REMARK 3 S TENSOR REMARK 3 S11: 0.1346 S12: 0.2736 S13: -0.0773 REMARK 3 S21: -0.0559 S22: -0.1205 S23: 0.5428 REMARK 3 S31: 0.5104 S32: -0.2462 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0832 -51.1380 3.1155 REMARK 3 T TENSOR REMARK 3 T11: 0.5104 T22: 0.2858 REMARK 3 T33: 0.3160 T12: 0.0049 REMARK 3 T13: 0.0540 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 5.0011 L22: 2.5041 REMARK 3 L33: 2.1362 L12: -1.9164 REMARK 3 L13: 0.4835 L23: -1.3762 REMARK 3 S TENSOR REMARK 3 S11: -0.4121 S12: -0.4847 S13: -0.0129 REMARK 3 S21: 0.1891 S22: 0.2870 S23: 0.1694 REMARK 3 S31: 0.6962 S32: -0.1413 S33: 0.1251 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 43 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4248 -28.4645 -2.1059 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.2476 REMARK 3 T33: 0.5123 T12: 0.0628 REMARK 3 T13: -0.0036 T23: -0.0846 REMARK 3 L TENSOR REMARK 3 L11: 4.3146 L22: 7.1268 REMARK 3 L33: 4.6060 L12: -1.8395 REMARK 3 L13: -2.9097 L23: 0.9846 REMARK 3 S TENSOR REMARK 3 S11: 0.4181 S12: -0.0779 S13: 0.7229 REMARK 3 S21: -0.7317 S22: -0.1181 S23: -0.2819 REMARK 3 S31: -0.4149 S32: -0.1062 S33: -0.3000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 58 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0842 -21.7004 4.0527 REMARK 3 T TENSOR REMARK 3 T11: 0.6512 T22: 0.6629 REMARK 3 T33: 0.9066 T12: 0.2131 REMARK 3 T13: 0.1537 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 17.1778 L22: 27.5226 REMARK 3 L33: 20.1542 L12: 20.4123 REMARK 3 L13: -7.2593 L23: -1.1983 REMARK 3 S TENSOR REMARK 3 S11: 0.1092 S12: 1.2134 S13: 1.4981 REMARK 3 S21: -0.3926 S22: 1.5980 S23: 1.4001 REMARK 3 S31: -1.7283 S32: 0.0414 S33: -1.7072 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 59 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9942 -42.4278 8.8393 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: 0.3225 REMARK 3 T33: 0.1668 T12: 0.0164 REMARK 3 T13: -0.0546 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 10.1158 L22: 10.0513 REMARK 3 L33: 1.2507 L12: -7.2540 REMARK 3 L13: -0.2884 L23: 1.2019 REMARK 3 S TENSOR REMARK 3 S11: -0.2845 S12: -1.2468 S13: 0.2127 REMARK 3 S21: 0.3730 S22: 0.4606 S23: -0.1287 REMARK 3 S31: 0.0377 S32: -0.0189 S33: -0.1762 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 28 REMARK 3 ORIGIN FOR THE GROUP (A): 57.8006 -47.3098 5.9597 REMARK 3 T TENSOR REMARK 3 T11: 0.0457 T22: 0.3543 REMARK 3 T33: 0.0954 T12: 0.0834 REMARK 3 T13: -0.0290 T23: -0.1412 REMARK 3 L TENSOR REMARK 3 L11: 8.8201 L22: 7.7750 REMARK 3 L33: 8.5838 L12: 2.8689 REMARK 3 L13: 0.9814 L23: -2.0901 REMARK 3 S TENSOR REMARK 3 S11: -0.3241 S12: 0.5027 S13: -0.4233 REMARK 3 S21: 0.1101 S22: 0.4842 S23: -0.6975 REMARK 3 S31: 0.0717 S32: 0.5404 S33: -0.1601 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 29 C 43 REMARK 3 ORIGIN FOR THE GROUP (A): 49.1669 -48.2990 9.9322 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.2912 REMARK 3 T33: 0.2125 T12: 0.0599 REMARK 3 T13: -0.0583 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 29.2203 L22: 8.0909 REMARK 3 L33: 15.1781 L12: -3.2151 REMARK 3 L13: 20.5968 L23: -0.3718 REMARK 3 S TENSOR REMARK 3 S11: 0.6490 S12: 0.3188 S13: 0.0102 REMARK 3 S21: 0.5422 S22: -0.5473 S23: 0.3800 REMARK 3 S31: 0.6984 S32: 0.1052 S33: -0.1018 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 44 C 58 REMARK 3 ORIGIN FOR THE GROUP (A): 51.2661 -58.7667 4.0548 REMARK 3 T TENSOR REMARK 3 T11: 0.5708 T22: 0.5494 REMARK 3 T33: 0.5313 T12: 0.1149 REMARK 3 T13: -0.1244 T23: -0.1779 REMARK 3 L TENSOR REMARK 3 L11: 6.5113 L22: 9.0758 REMARK 3 L33: 6.4641 L12: -2.0734 REMARK 3 L13: -0.8461 L23: -2.9276 REMARK 3 S TENSOR REMARK 3 S11: -0.2288 S12: -0.4727 S13: -0.8647 REMARK 3 S21: 0.1320 S22: 0.9183 S23: 0.6521 REMARK 3 S31: 1.2628 S32: 0.1902 S33: -0.6896 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 59 C 86 REMARK 3 ORIGIN FOR THE GROUP (A): 56.9484 -39.9588 -7.4953 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.9326 REMARK 3 T33: 0.3036 T12: -0.1578 REMARK 3 T13: 0.0153 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: 5.4622 L22: 28.2262 REMARK 3 L33: 4.5222 L12: 9.5520 REMARK 3 L13: -0.4100 L23: -2.7814 REMARK 3 S TENSOR REMARK 3 S11: -0.8105 S12: 1.2331 S13: 0.5073 REMARK 3 S21: -1.9384 S22: 0.9095 S23: -0.5539 REMARK 3 S31: -0.2760 S32: 0.6981 S33: -0.0990 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 28 REMARK 3 ORIGIN FOR THE GROUP (A): 44.5063 -24.8723 0.2092 REMARK 3 T TENSOR REMARK 3 T11: 0.6246 T22: 0.3540 REMARK 3 T33: 0.5925 T12: -0.1648 REMARK 3 T13: -0.4358 T23: 0.3015 REMARK 3 L TENSOR REMARK 3 L11: 0.7027 L22: 9.5933 REMARK 3 L33: 9.6626 L12: -0.4445 REMARK 3 L13: -1.9733 L23: 1.3020 REMARK 3 S TENSOR REMARK 3 S11: -0.2814 S12: 0.2394 S13: 0.2766 REMARK 3 S21: -0.1331 S22: 0.2221 S23: 0.8538 REMARK 3 S31: -0.8043 S32: -0.3966 S33: 0.0594 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 29 D 58 REMARK 3 ORIGIN FOR THE GROUP (A): 52.1342 -18.4126 0.3128 REMARK 3 T TENSOR REMARK 3 T11: 0.6208 T22: 0.5232 REMARK 3 T33: 0.7668 T12: -0.2045 REMARK 3 T13: -0.3734 T23: 0.4051 REMARK 3 L TENSOR REMARK 3 L11: 4.7765 L22: 6.3863 REMARK 3 L33: 8.7725 L12: -0.3686 REMARK 3 L13: -5.7306 L23: 3.6664 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: 0.1564 S13: 0.3310 REMARK 3 S21: -0.5353 S22: 0.1209 S23: -0.3887 REMARK 3 S31: -0.7845 S32: 0.1388 S33: -0.2316 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 59 D 90 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0149 -38.5346 -9.3561 REMARK 3 T TENSOR REMARK 3 T11: 0.7422 T22: 0.7851 REMARK 3 T33: 0.2981 T12: -0.3285 REMARK 3 T13: -0.0664 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 3.8009 L22: 24.5688 REMARK 3 L33: 2.1446 L12: 7.7951 REMARK 3 L13: -1.1570 L23: -3.4296 REMARK 3 S TENSOR REMARK 3 S11: -1.1184 S12: 1.0926 S13: 0.0013 REMARK 3 S21: -2.2654 S22: 1.1371 S23: -0.3201 REMARK 3 S31: -0.2078 S32: 0.2952 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 8 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0254 -12.4118 -7.4369 REMARK 3 T TENSOR REMARK 3 T11: 0.8434 T22: 0.2151 REMARK 3 T33: 0.7959 T12: 0.2473 REMARK 3 T13: 0.1529 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 5.4256 L22: 12.5870 REMARK 3 L33: 9.5716 L12: -3.6571 REMARK 3 L13: -1.8155 L23: -0.1902 REMARK 3 S TENSOR REMARK 3 S11: -0.1483 S12: -0.1473 S13: 0.6199 REMARK 3 S21: 0.2861 S22: -0.0032 S23: -0.0045 REMARK 3 S31: -0.8897 S32: 0.1877 S33: 0.1514 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 9 E 25 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9780 -49.4125 -21.3488 REMARK 3 T TENSOR REMARK 3 T11: 0.2814 T22: 0.3592 REMARK 3 T33: 0.1303 T12: 0.0550 REMARK 3 T13: -0.0037 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.5039 L22: 13.2228 REMARK 3 L33: 2.7913 L12: -0.7781 REMARK 3 L13: -0.6486 L23: 1.2385 REMARK 3 S TENSOR REMARK 3 S11: 0.1491 S12: 0.3748 S13: -0.0950 REMARK 3 S21: -0.8482 S22: -0.3213 S23: -0.6808 REMARK 3 S31: -0.1514 S32: -0.3637 S33: 0.1722 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 17 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1297 -50.3686 -20.4227 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.3167 REMARK 3 T33: 0.1330 T12: 0.0691 REMARK 3 T13: -0.0849 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 3.3621 L22: 5.4351 REMARK 3 L33: 2.0279 L12: 0.2617 REMARK 3 L13: -0.8029 L23: 2.0522 REMARK 3 S TENSOR REMARK 3 S11: 0.4176 S12: 0.2681 S13: -0.1184 REMARK 3 S21: -0.1933 S22: -0.5094 S23: -0.3324 REMARK 3 S31: -0.1392 S32: -0.4688 S33: 0.0918 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 18 F 25 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2789 -12.0365 -10.0309 REMARK 3 T TENSOR REMARK 3 T11: 0.7851 T22: 0.2050 REMARK 3 T33: 0.8163 T12: 0.1293 REMARK 3 T13: 0.0475 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 11.3702 L22: 15.3354 REMARK 3 L33: 11.8293 L12: -5.3841 REMARK 3 L13: -7.0740 L23: 7.4846 REMARK 3 S TENSOR REMARK 3 S11: 0.2599 S12: 0.1884 S13: 0.8050 REMARK 3 S21: -0.9320 S22: -0.4334 S23: 0.3605 REMARK 3 S31: -0.9713 S32: -0.5205 S33: 0.1735 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 19 REMARK 3 ORIGIN FOR THE GROUP (A): 47.8960 -23.6410 15.3403 REMARK 3 T TENSOR REMARK 3 T11: 0.5817 T22: 0.2985 REMARK 3 T33: 0.3646 T12: 0.1237 REMARK 3 T13: -0.1282 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.7536 L22: 15.2102 REMARK 3 L33: 2.7904 L12: -3.2165 REMARK 3 L13: 1.6174 L23: -4.1169 REMARK 3 S TENSOR REMARK 3 S11: -0.3969 S12: 0.1640 S13: 0.7827 REMARK 3 S21: 1.5932 S22: -0.0536 S23: 0.1542 REMARK 3 S31: -1.1681 S32: 0.0392 S33: 0.4505 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 20 G 25 REMARK 3 ORIGIN FOR THE GROUP (A): 53.0361 -62.9564 20.4606 REMARK 3 T TENSOR REMARK 3 T11: 0.6165 T22: 0.2405 REMARK 3 T33: 0.8836 T12: 0.2948 REMARK 3 T13: -0.0798 T23: 0.1191 REMARK 3 L TENSOR REMARK 3 L11: 2.7173 L22: 15.9487 REMARK 3 L33: 4.2486 L12: 2.5150 REMARK 3 L13: -1.9609 L23: 3.8068 REMARK 3 S TENSOR REMARK 3 S11: -0.4689 S12: -0.3573 S13: -0.9735 REMARK 3 S21: 1.2733 S22: 0.0584 S23: -0.3721 REMARK 3 S31: 1.1844 S32: 0.3450 S33: 0.4104 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 6 REMARK 3 ORIGIN FOR THE GROUP (A): 58.2589 -62.5187 18.6356 REMARK 3 T TENSOR REMARK 3 T11: 0.5028 T22: 0.2925 REMARK 3 T33: 0.6681 T12: 0.1523 REMARK 3 T13: -0.3711 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 18.2765 L22: 18.9925 REMARK 3 L33: 17.0571 L12: -11.8512 REMARK 3 L13: -1.5368 L23: -8.9001 REMARK 3 S TENSOR REMARK 3 S11: -0.1819 S12: -0.2523 S13: -0.7185 REMARK 3 S21: 0.6008 S22: -0.3933 S23: -1.0849 REMARK 3 S31: 1.0303 S32: 1.3330 S33: 0.5752 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 7 H 25 REMARK 3 ORIGIN FOR THE GROUP (A): 47.5796 -24.3280 16.0554 REMARK 3 T TENSOR REMARK 3 T11: 0.6438 T22: 0.2753 REMARK 3 T33: 0.5088 T12: 0.1244 REMARK 3 T13: -0.0440 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.9775 L22: 8.2254 REMARK 3 L33: 3.7752 L12: -0.5794 REMARK 3 L13: 0.9895 L23: -3.7442 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: 0.0578 S13: 0.7699 REMARK 3 S21: 1.1512 S22: -0.6080 S23: 0.4718 REMARK 3 S31: -1.1836 S32: 0.2836 S33: 0.5511 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4IHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17712 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLECULAR REPLACEMENT REMARK 200 STARTING MODEL: PDB ENTRY 3M1E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EQUAL VOLUMES OF PRECIPITANT, PROTEIN REMARK 280 SOLUTION AND DNA. PRECIPITANT: OPTIMIZED INDEX SCREEN 79- 25 MM REMARK 280 BIS-TRIS, 25% PEG 3000, 50 MM AMMONIUM ACETATE. PROTEIN: 20 MM REMARK 280 TRIS BASE (PH 8.0), 0.5 M NACL, 10% GLYCEROL, 150 MM IMIDAZOLE, REMARK 280 10 MM BME, MICROBATCH UNDER OIL, TEMPERATURE 288K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.47800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 150.14750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.47800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 150.14750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 90 REMARK 465 HIS A 91 REMARK 465 HIS A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS B 91 REMARK 465 HIS B 92 REMARK 465 HIS B 93 REMARK 465 HIS B 94 REMARK 465 SER C 87 REMARK 465 GLY C 88 REMARK 465 HIS C 89 REMARK 465 HIS C 90 REMARK 465 HIS C 91 REMARK 465 HIS C 92 REMARK 465 HIS C 93 REMARK 465 HIS C 94 REMARK 465 HIS D 91 REMARK 465 HIS D 92 REMARK 465 HIS D 93 REMARK 465 HIS D 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H3 DT E 14 N1 DA F 12 1.49 REMARK 500 H3 DT G 14 N1 DA H 12 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 54 C - N - CA ANGL. DEV. = -9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 17 119.17 -169.01 REMARK 500 ALA A 86 40.54 -70.50 REMARK 500 SER A 87 43.10 -150.76 REMARK 500 SER B 52 128.79 -170.05 REMARK 500 CYS D 26 50.65 76.10 REMARK 500 SER D 52 114.57 -170.59 REMARK 500 PRO D 54 91.17 -65.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M1E RELATED DB: PDB REMARK 900 BENM DNA BINDING DOMAIN REMARK 900 RELATED ID: 4IHS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BENM_DBD/CATB SITE 1 DNA COMPLEX DBREF 4IHT A 1 87 UNP O68014 BENM_ACIAD 1 87 DBREF 4IHT B 1 87 UNP O68014 BENM_ACIAD 1 87 DBREF 4IHT C 1 87 UNP O68014 BENM_ACIAD 1 87 DBREF 4IHT D 1 87 UNP O68014 BENM_ACIAD 1 87 DBREF 4IHT E 1 25 PDB 4IHT 4IHT 1 25 DBREF 4IHT G 1 25 PDB 4IHT 4IHT 1 25 DBREF 4IHT F 1 25 PDB 4IHT 4IHT 1 25 DBREF 4IHT H 1 25 PDB 4IHT 4IHT 1 25 SEQADV 4IHT GLY A 88 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS A 89 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS A 90 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS A 91 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS A 92 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS A 93 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS A 94 UNP O68014 EXPRESSION TAG SEQADV 4IHT GLY B 88 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS B 89 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS B 90 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS B 91 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS B 92 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS B 93 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS B 94 UNP O68014 EXPRESSION TAG SEQADV 4IHT GLY C 88 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS C 89 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS C 90 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS C 91 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS C 92 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS C 93 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS C 94 UNP O68014 EXPRESSION TAG SEQADV 4IHT GLY D 88 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS D 89 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS D 90 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS D 91 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS D 92 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS D 93 UNP O68014 EXPRESSION TAG SEQADV 4IHT HIS D 94 UNP O68014 EXPRESSION TAG SEQRES 1 A 94 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 A 94 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 A 94 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 A 94 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 A 94 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 A 94 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 A 94 VAL SER MET THR LYS ARG ILE ALA SER GLY HIS HIS HIS SEQRES 8 A 94 HIS HIS HIS SEQRES 1 B 94 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 B 94 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 B 94 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 B 94 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 B 94 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 B 94 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 B 94 VAL SER MET THR LYS ARG ILE ALA SER GLY HIS HIS HIS SEQRES 8 B 94 HIS HIS HIS SEQRES 1 C 94 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 C 94 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 C 94 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 C 94 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 C 94 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 C 94 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 C 94 VAL SER MET THR LYS ARG ILE ALA SER GLY HIS HIS HIS SEQRES 8 C 94 HIS HIS HIS SEQRES 1 D 94 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 D 94 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 D 94 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 D 94 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 D 94 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 D 94 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 D 94 VAL SER MET THR LYS ARG ILE ALA SER GLY HIS HIS HIS SEQRES 8 D 94 HIS HIS HIS SEQRES 1 E 25 DT DA DA DA DA DA DT DA DC DT DC DC DA SEQRES 2 E 25 DT DA DG DG DT DA DT DT DT DT DA DT SEQRES 1 F 25 DA DT DA DA DA DA DT DA DC DC DT DA DT SEQRES 2 F 25 DG DG DA DG DT DA DT DT DT DT DT DA SEQRES 1 G 25 DT DA DA DA DA DA DT DA DC DT DC DC DA SEQRES 2 G 25 DT DA DG DG DT DA DT DT DT DT DA DT SEQRES 1 H 25 DA DT DA DA DA DA DT DA DC DC DT DA DT SEQRES 2 H 25 DG DG DA DG DT DA DT DT DT DT DT DA FORMUL 9 HOH *3(H2 O) HELIX 1 1 GLU A 2 GLN A 16 1 15 HELIX 2 2 SER A 17 CYS A 26 1 10 HELIX 3 3 ALA A 28 GLY A 44 1 17 HELIX 4 4 THR A 58 ALA A 86 1 29 HELIX 5 5 GLU B 2 GLN B 16 1 15 HELIX 6 6 SER B 17 LEU B 25 1 9 HELIX 7 7 ALA B 28 GLY B 44 1 17 HELIX 8 8 THR B 58 SER B 87 1 30 HELIX 9 9 GLU C 2 GLN C 16 1 15 HELIX 10 10 SER C 17 CYS C 26 1 10 HELIX 11 11 ALA C 28 GLY C 44 1 17 HELIX 12 12 THR C 58 ALA C 86 1 29 HELIX 13 13 GLU D 2 GLN D 16 1 15 HELIX 14 14 SER D 17 CYS D 26 1 10 HELIX 15 15 ALA D 28 GLY D 44 1 17 HELIX 16 16 THR D 58 SER D 87 1 30 SHEET 1 A 2 LEU C 48 GLU C 49 0 SHEET 2 A 2 LYS C 56 THR C 57 -1 O LYS C 56 N GLU C 49 CISPEP 1 ARG A 53 PRO A 54 0 3.92 CRYST1 58.956 300.295 46.003 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016962 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021738 0.00000