data_4II9 # _entry.id 4II9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4II9 pdb_00004ii9 10.2210/pdb4ii9/pdb NDB NA2199 ? ? RCSB RCSB076785 ? ? WWPDB D_1000076785 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1NE9 'apo-form structure' unspecified PDB 1P4N 'protein-substrate complex' unspecified PDB 1XE4 'K36M mutant' unspecified PDB 1XF8 'Y254 mutant' unspecified PDB 1XIX 'apo form structure form II' unspecified PDB 3GKR 'protein-substrate product complex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4II9 _pdbx_database_status.recvd_initial_deposition_date 2012-12-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li de la Sierra-Gallay, I.' 1 'Fonvielle, M.' 2 'van Tilbeurgh, H.' 3 'Arthur, M.' 4 'Etheve-Quelquejeu, M.' 5 # _citation.id primary _citation.title ;The Structure of FemXWv in Complex with a Peptidyl-RNA Conjugate: Mechanism of Aminoacyl Transfer from Ala-tRNA(Ala) to Peptidoglycan Precursors ; _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 52 _citation.page_first 7278 _citation.page_last 7281 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23744707 _citation.pdbx_database_id_DOI 10.1002/anie.201301411 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fonvielle, M.' 1 ? primary 'Li de La Sierra-Gallay, I.' 2 ? primary 'El-Sagheer, A.H.' 3 ? primary 'Lecerf, M.' 4 ? primary 'Patin, D.' 5 ? primary 'Mellal, D.' 6 ? primary 'Mayer, C.' 7 ? primary 'Blanot, D.' 8 ? primary 'Gale, N.' 9 ? primary 'Brown, T.' 10 ? primary 'van Tilbeurgh, H.' 11 ? primary 'Etheve-Quelquejeu, M.' 12 ? primary 'Arthur, M.' 13 ? # _cell.entry_id 4II9 _cell.length_a 42.130 _cell.length_b 101.770 _cell.length_c 46.320 _cell.angle_alpha 90.00 _cell.angle_beta 102.60 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4II9 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man FemX 39212.918 1 2.3.2.10 ? ? ? 2 polymer syn '5-mer peptide' 463.505 1 ? ? ? ? 3 polymer syn ;RNA (5'-R(P*CP*CP*(A9Z))-3') ; 973.715 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 non-polymer syn "URIDINE-5'-DIPHOSPHATE" 404.161 1 ? ? ? ? 6 non-polymer syn 'N-acetyl-alpha-muramic acid' 293.270 1 ? ? ? ? 7 water nat water 18.015 296 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MPVLNLNDPQAVERYEEFMRQSPYGQVTQDLGWAKVKNNWEPVDVYLEDDQGAIIAAMSMLLGDTPTDKKFAYASKGPVM DVTDVDLLDRLVDEAVKALDGRAYVLRFDPEVAYSDEFNTTLQDHGYVTRNRNVADAGMHATIQPRLNMVLDLTKFPDAK TTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAERHGITHRPIEYFQRMQAAFDADTMRIFVAEREGKL LSTGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDSLYVFKHVFVKDAPREYIGE IDKVLDPEVYAELVKDGHHHHHH ; ;MPVLNLNDPQAVERYEEFMRQSPYGQVTQDLGWAKVKNNWEPVDVYLEDDQGAIIAAMSMLLGDTPTDKKFAYASKGPVM DVTDVDLLDRLVDEAVKALDGRAYVLRFDPEVAYSDEFNTTLQDHGYVTRNRNVADAGMHATIQPRLNMVLDLTKFPDAK TTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAERHGITHRPIEYFQRMQAAFDADTMRIFVAEREGKL LSTGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDSLYVFKHVFVKDAPREYIGE IDKVLDPEVYAELVKDGHHHHHH ; A ? 2 'polypeptide(L)' no yes 'A(FGA)C(DAL)(DAL)' AECAA B ? 3 polyribonucleotide no yes 'CC(A9Z)' CCX C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 VAL n 1 4 LEU n 1 5 ASN n 1 6 LEU n 1 7 ASN n 1 8 ASP n 1 9 PRO n 1 10 GLN n 1 11 ALA n 1 12 VAL n 1 13 GLU n 1 14 ARG n 1 15 TYR n 1 16 GLU n 1 17 GLU n 1 18 PHE n 1 19 MET n 1 20 ARG n 1 21 GLN n 1 22 SER n 1 23 PRO n 1 24 TYR n 1 25 GLY n 1 26 GLN n 1 27 VAL n 1 28 THR n 1 29 GLN n 1 30 ASP n 1 31 LEU n 1 32 GLY n 1 33 TRP n 1 34 ALA n 1 35 LYS n 1 36 VAL n 1 37 LYS n 1 38 ASN n 1 39 ASN n 1 40 TRP n 1 41 GLU n 1 42 PRO n 1 43 VAL n 1 44 ASP n 1 45 VAL n 1 46 TYR n 1 47 LEU n 1 48 GLU n 1 49 ASP n 1 50 ASP n 1 51 GLN n 1 52 GLY n 1 53 ALA n 1 54 ILE n 1 55 ILE n 1 56 ALA n 1 57 ALA n 1 58 MET n 1 59 SER n 1 60 MET n 1 61 LEU n 1 62 LEU n 1 63 GLY n 1 64 ASP n 1 65 THR n 1 66 PRO n 1 67 THR n 1 68 ASP n 1 69 LYS n 1 70 LYS n 1 71 PHE n 1 72 ALA n 1 73 TYR n 1 74 ALA n 1 75 SER n 1 76 LYS n 1 77 GLY n 1 78 PRO n 1 79 VAL n 1 80 MET n 1 81 ASP n 1 82 VAL n 1 83 THR n 1 84 ASP n 1 85 VAL n 1 86 ASP n 1 87 LEU n 1 88 LEU n 1 89 ASP n 1 90 ARG n 1 91 LEU n 1 92 VAL n 1 93 ASP n 1 94 GLU n 1 95 ALA n 1 96 VAL n 1 97 LYS n 1 98 ALA n 1 99 LEU n 1 100 ASP n 1 101 GLY n 1 102 ARG n 1 103 ALA n 1 104 TYR n 1 105 VAL n 1 106 LEU n 1 107 ARG n 1 108 PHE n 1 109 ASP n 1 110 PRO n 1 111 GLU n 1 112 VAL n 1 113 ALA n 1 114 TYR n 1 115 SER n 1 116 ASP n 1 117 GLU n 1 118 PHE n 1 119 ASN n 1 120 THR n 1 121 THR n 1 122 LEU n 1 123 GLN n 1 124 ASP n 1 125 HIS n 1 126 GLY n 1 127 TYR n 1 128 VAL n 1 129 THR n 1 130 ARG n 1 131 ASN n 1 132 ARG n 1 133 ASN n 1 134 VAL n 1 135 ALA n 1 136 ASP n 1 137 ALA n 1 138 GLY n 1 139 MET n 1 140 HIS n 1 141 ALA n 1 142 THR n 1 143 ILE n 1 144 GLN n 1 145 PRO n 1 146 ARG n 1 147 LEU n 1 148 ASN n 1 149 MET n 1 150 VAL n 1 151 LEU n 1 152 ASP n 1 153 LEU n 1 154 THR n 1 155 LYS n 1 156 PHE n 1 157 PRO n 1 158 ASP n 1 159 ALA n 1 160 LYS n 1 161 THR n 1 162 THR n 1 163 LEU n 1 164 ASP n 1 165 LEU n 1 166 TYR n 1 167 PRO n 1 168 SER n 1 169 LYS n 1 170 THR n 1 171 LYS n 1 172 SER n 1 173 LYS n 1 174 ILE n 1 175 LYS n 1 176 ARG n 1 177 PRO n 1 178 PHE n 1 179 ARG n 1 180 ASP n 1 181 GLY n 1 182 VAL n 1 183 GLU n 1 184 VAL n 1 185 HIS n 1 186 SER n 1 187 GLY n 1 188 ASN n 1 189 SER n 1 190 ALA n 1 191 THR n 1 192 GLU n 1 193 LEU n 1 194 ASP n 1 195 GLU n 1 196 PHE n 1 197 PHE n 1 198 LYS n 1 199 THR n 1 200 TYR n 1 201 THR n 1 202 THR n 1 203 MET n 1 204 ALA n 1 205 GLU n 1 206 ARG n 1 207 HIS n 1 208 GLY n 1 209 ILE n 1 210 THR n 1 211 HIS n 1 212 ARG n 1 213 PRO n 1 214 ILE n 1 215 GLU n 1 216 TYR n 1 217 PHE n 1 218 GLN n 1 219 ARG n 1 220 MET n 1 221 GLN n 1 222 ALA n 1 223 ALA n 1 224 PHE n 1 225 ASP n 1 226 ALA n 1 227 ASP n 1 228 THR n 1 229 MET n 1 230 ARG n 1 231 ILE n 1 232 PHE n 1 233 VAL n 1 234 ALA n 1 235 GLU n 1 236 ARG n 1 237 GLU n 1 238 GLY n 1 239 LYS n 1 240 LEU n 1 241 LEU n 1 242 SER n 1 243 THR n 1 244 GLY n 1 245 ILE n 1 246 ALA n 1 247 LEU n 1 248 LYS n 1 249 TYR n 1 250 GLY n 1 251 ARG n 1 252 LYS n 1 253 ILE n 1 254 TRP n 1 255 TYR n 1 256 MET n 1 257 TYR n 1 258 ALA n 1 259 GLY n 1 260 SER n 1 261 MET n 1 262 ASP n 1 263 GLY n 1 264 ASN n 1 265 THR n 1 266 TYR n 1 267 TYR n 1 268 ALA n 1 269 PRO n 1 270 TYR n 1 271 ALA n 1 272 VAL n 1 273 GLN n 1 274 SER n 1 275 GLU n 1 276 MET n 1 277 ILE n 1 278 GLN n 1 279 TRP n 1 280 ALA n 1 281 LEU n 1 282 ASP n 1 283 THR n 1 284 ASN n 1 285 THR n 1 286 ASP n 1 287 LEU n 1 288 TYR n 1 289 ASP n 1 290 LEU n 1 291 GLY n 1 292 GLY n 1 293 ILE n 1 294 GLU n 1 295 SER n 1 296 GLU n 1 297 SER n 1 298 THR n 1 299 ASP n 1 300 ASP n 1 301 SER n 1 302 LEU n 1 303 TYR n 1 304 VAL n 1 305 PHE n 1 306 LYS n 1 307 HIS n 1 308 VAL n 1 309 PHE n 1 310 VAL n 1 311 LYS n 1 312 ASP n 1 313 ALA n 1 314 PRO n 1 315 ARG n 1 316 GLU n 1 317 TYR n 1 318 ILE n 1 319 GLY n 1 320 GLU n 1 321 ILE n 1 322 ASP n 1 323 LYS n 1 324 VAL n 1 325 LEU n 1 326 ASP n 1 327 PRO n 1 328 GLU n 1 329 VAL n 1 330 TYR n 1 331 ALA n 1 332 GLU n 1 333 LEU n 1 334 VAL n 1 335 LYS n 1 336 ASP n 1 337 GLY n 1 338 HIS n 1 339 HIS n 1 340 HIS n 1 341 HIS n 1 342 HIS n 1 343 HIS n 2 1 ALA n 2 2 FGA n 2 3 CYS n 2 4 DAL n 2 5 DAL n 3 1 C n 3 2 C n 3 3 A9Z n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene femX _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain CIP102810T _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Weissella viridescens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1629 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain TOP10 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pTrc-His60 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'synthetic peptide' 3 1 sample ? ? ? ? ? 'synthetic peptide' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q9EY50_LACVI Q9EY50 1 ;MPVLNLNDPQAVERYEEFMRQSPYGQVTQDLGWAKVKNNWEPVDVYLEDDQGAIIAAMSMLLGDTPTDKKFAYASKGPVM DVTDVDLLDRLVDEAVKALDGRAYVLRFDPEVAYSDEFNTTLQDHGYVTRNRNVADAGMHATIQPRLNMVLDLTKFPDAK TTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAERHGITHRPIEYFQRMQAAFDADTMRIFVAEREGKL LSTGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDSLYVFKHVFVKDAPREYIGE IDKVLDPEVYAELVKD ; 1 ? 2 PDB 4II9 4II9 2 ? ? ? 3 PDB 4II9 4II9 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4II9 A 1 ? 336 ? Q9EY50 1 ? 336 ? 0 335 2 2 4II9 B 1 ? 5 ? 4II9 3 ? 7 ? 3 7 3 3 4II9 C 1 ? 3 ? 4II9 8 ? 10 ? 8 10 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4II9 GLY A 337 ? UNP Q9EY50 ? ? 'expression tag' 336 1 1 4II9 HIS A 338 ? UNP Q9EY50 ? ? 'expression tag' 337 2 1 4II9 HIS A 339 ? UNP Q9EY50 ? ? 'expression tag' 338 3 1 4II9 HIS A 340 ? UNP Q9EY50 ? ? 'expression tag' 339 4 1 4II9 HIS A 341 ? UNP Q9EY50 ? ? 'expression tag' 340 5 1 4II9 HIS A 342 ? UNP Q9EY50 ? ? 'expression tag' 341 6 1 4II9 HIS A 343 ? UNP Q9EY50 ? ? 'expression tag' 342 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A9Z 'RNA linking' n ;2'-deoxy-2'-(4-ethyl-1H-1,2,3-triazol-1-yl)adenosine 5'-(dihydrogen phosphate) ; ? 'C14 H19 N8 O6 P' 426.324 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 FGA 'D-gamma-peptide, C-delta linking' . 'GAMMA-D-GLUTAMIC ACID' 'D-GLUTAMIC ACID' 'C5 H9 N O4' 147.129 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MUB 'D-saccharide, alpha linking' . 'N-acetyl-alpha-muramic acid' 'N-acetyl-muramic acid; N-ACETYLMURAMIC ACID' 'C11 H19 N O8' 293.270 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UDP 'RNA linking' . "URIDINE-5'-DIPHOSPHATE" ? 'C9 H14 N2 O12 P2' 404.161 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4II9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 48.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details ;0.1M Tris-sodium citrate buffer, 0.2M ammonium acetate, 33% polyethylene glycol 4k, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-11-14 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'channel cut cryogenically cooled monochromator crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9791 # _reflns.entry_id 4II9 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 38.12 _reflns.d_resolution_high 1.66 _reflns.number_obs 44718 _reflns.number_all 44718 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.8 _reflns.B_iso_Wilson_estimate 23.2 _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.66 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 98.1 _reflns_shell.Rmerge_I_obs 0.189 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.9 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 7126 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4II9 _refine.ls_number_reflns_obs 42482 _refine.ls_number_reflns_all 44718 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.12 _refine.ls_d_res_high 1.66 _refine.ls_percent_reflns_obs 99.54 _refine.ls_R_factor_obs 0.17661 _refine.ls_R_factor_all 0.178 _refine.ls_R_factor_R_work 0.17487 _refine.ls_R_factor_R_free 0.20935 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2236 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.B_iso_mean 17.328 _refine.aniso_B[1][1] -0.95 _refine.aniso_B[2][2] -1.07 _refine.aniso_B[3][3] 1.75 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.41 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model 3GKR _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.096 _refine.pdbx_overall_ESU_R_Free 0.096 _refine.overall_SU_ML 0.057 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.632 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2727 _refine_hist.pdbx_number_atoms_nucleic_acid 68 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 296 _refine_hist.number_atoms_total 3140 _refine_hist.d_res_high 1.66 _refine_hist.d_res_low 38.12 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.024 0.019 ? 2924 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.342 1.987 ? 3978 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.842 5.000 ? 340 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 33.099 24.388 ? 139 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.135 15.000 ? 466 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 21.742 15.000 ? 17 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.170 0.200 ? 436 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.013 0.021 ? 2209 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.660 _refine_ls_shell.d_res_low 1.703 _refine_ls_shell.number_reflns_R_work 3011 _refine_ls_shell.R_factor_R_work 0.270 _refine_ls_shell.percent_reflns_obs 96.53 _refine_ls_shell.R_factor_R_free 0.300 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 158 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4II9 _struct.title 'Crystal structure of Weissella viridescens FemXVv non-ribosomal amino acid transferase in complex with a peptidyl-RNA conjugate' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4II9 _struct_keywords.pdbx_keywords TRANSFERASE/PEPTIDE/RNA _struct_keywords.text 'FEMX, PEPTIDOGLYCAN, transferase, peptidyl-RNA conjugate complex, TRANSFERASE-PEPTIDE-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 8 ? SER A 22 ? ASP A 7 SER A 21 1 ? 15 HELX_P HELX_P2 2 GLN A 26 ? ASP A 30 ? GLN A 25 ASP A 29 5 ? 5 HELX_P HELX_P3 3 LEU A 31 ? LYS A 37 ? LEU A 30 LYS A 36 1 ? 7 HELX_P HELX_P4 4 ASP A 84 ? ASP A 100 ? ASP A 83 ASP A 99 1 ? 17 HELX_P HELX_P5 5 SER A 115 ? HIS A 125 ? SER A 114 HIS A 124 1 ? 11 HELX_P HELX_P6 6 VAL A 134 ? THR A 142 ? VAL A 133 THR A 141 5 ? 9 HELX_P HELX_P7 7 THR A 154 ? PHE A 156 ? THR A 153 PHE A 155 5 ? 3 HELX_P HELX_P8 8 THR A 161 ? TYR A 166 ? THR A 160 TYR A 165 5 ? 6 HELX_P HELX_P9 9 PRO A 167 ? ASP A 180 ? PRO A 166 ASP A 179 1 ? 14 HELX_P HELX_P10 10 SER A 189 ? GLY A 208 ? SER A 188 GLY A 207 1 ? 20 HELX_P HELX_P11 11 PRO A 213 ? PHE A 224 ? PRO A 212 PHE A 223 1 ? 12 HELX_P HELX_P12 12 TYR A 267 ? THR A 283 ? TYR A 266 THR A 282 1 ? 17 HELX_P HELX_P13 13 ASP A 300 ? VAL A 310 ? ASP A 299 VAL A 309 1 ? 11 HELX_P HELX_P14 14 ASP A 326 ? VAL A 334 ? ASP A 325 VAL A 333 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ALA 1 C ? ? ? 1_555 B FGA 2 N ? ? B ALA 3 B FGA 4 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale2 covale one ? B ALA 1 N ? ? ? 1_555 F MUB . C10 ? ? B ALA 3 B MUB 102 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale3 covale both ? B FGA 2 CD ? ? ? 1_555 B CYS 3 N ? ? B FGA 4 B CYS 5 1_555 ? ? ? ? ? ? ? 1.411 ? ? covale4 covale both ? B CYS 3 C ? ? ? 1_555 B DAL 4 N ? ? B CYS 5 B DAL 6 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale5 covale none ? B CYS 3 SG ? ? ? 1_555 C A9Z 3 C7T ? ? B CYS 5 C A9Z 10 1_555 ? ? ? ? ? ? ? 1.791 ? ? covale6 covale both ? B DAL 4 C ? ? ? 1_555 B DAL 5 N ? ? B DAL 6 B DAL 7 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale7 covale both ? E UDP . PB ? ? ? 1_555 F MUB . O1 ? ? B UDP 101 B MUB 102 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale8 covale both ? C C 2 "O3'" ? ? ? 1_555 C A9Z 3 P ? ? C C 9 C A9Z 10 1_555 ? ? ? ? ? ? ? 1.726 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 77 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 76 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 78 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 77 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.46 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 41 ? GLU A 48 ? GLU A 40 GLU A 47 A 2 ILE A 54 ? GLY A 63 ? ILE A 53 GLY A 62 A 3 LYS A 70 ? ALA A 74 ? LYS A 69 ALA A 73 A 4 ALA A 103 ? PHE A 108 ? ALA A 102 PHE A 107 A 5 GLU A 320 ? VAL A 324 ? GLU A 319 VAL A 323 A 6 VAL A 128 ? ARG A 130 ? VAL A 127 ARG A 129 B 1 VAL A 182 ? GLY A 187 ? VAL A 181 GLY A 186 B 2 MET A 229 ? ARG A 236 ? MET A 228 ARG A 235 B 3 LYS A 239 ? TYR A 249 ? LYS A 238 TYR A 248 B 4 LYS A 252 ? SER A 260 ? LYS A 251 SER A 259 B 5 LEU A 287 ? ILE A 293 ? LEU A 286 ILE A 292 B 6 LEU A 147 ? ASP A 152 ? LEU A 146 ASP A 151 B 7 ARG A 315 ? GLU A 316 ? ARG A 314 GLU A 315 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 45 ? N VAL A 44 O MET A 58 ? O MET A 57 A 2 3 N GLY A 63 ? N GLY A 62 O PHE A 71 ? O PHE A 70 A 3 4 N ALA A 74 ? N ALA A 73 O ARG A 107 ? O ARG A 106 A 4 5 N LEU A 106 ? N LEU A 105 O LYS A 323 ? O LYS A 322 A 5 6 O ASP A 322 ? O ASP A 321 N VAL A 128 ? N VAL A 127 B 1 2 N HIS A 185 ? N HIS A 184 O VAL A 233 ? O VAL A 232 B 2 3 N PHE A 232 ? N PHE A 231 O GLY A 244 ? O GLY A 243 B 3 4 N LEU A 247 ? N LEU A 246 O TRP A 254 ? O TRP A 253 B 4 5 N TYR A 255 ? N TYR A 254 O ASP A 289 ? O ASP A 288 B 5 6 O TYR A 288 ? O TYR A 287 N LEU A 151 ? N LEU A 150 B 6 7 N ASN A 148 ? N ASN A 147 O ARG A 315 ? O ARG A 314 # _database_PDB_matrix.entry_id 4II9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4II9 _atom_sites.fract_transf_matrix[1][1] 0.023736 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005306 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009826 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022122 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 PRO 2 1 1 PRO PRO A . n A 1 3 VAL 3 2 2 VAL VAL A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 ASN 5 4 4 ASN ASN A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 ASN 7 6 6 ASN ASN A . n A 1 8 ASP 8 7 7 ASP ASP A . n A 1 9 PRO 9 8 8 PRO PRO A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 ALA 11 10 10 ALA ALA A . n A 1 12 VAL 12 11 11 VAL VAL A . n A 1 13 GLU 13 12 12 GLU GLU A . n A 1 14 ARG 14 13 13 ARG ARG A . n A 1 15 TYR 15 14 14 TYR TYR A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 PHE 18 17 17 PHE PHE A . n A 1 19 MET 19 18 18 MET MET A . n A 1 20 ARG 20 19 19 ARG ARG A . n A 1 21 GLN 21 20 20 GLN GLN A . n A 1 22 SER 22 21 21 SER SER A . n A 1 23 PRO 23 22 22 PRO PRO A . n A 1 24 TYR 24 23 23 TYR TYR A . n A 1 25 GLY 25 24 24 GLY GLY A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 VAL 27 26 26 VAL VAL A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 GLN 29 28 28 GLN GLN A . n A 1 30 ASP 30 29 29 ASP ASP A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 GLY 32 31 31 GLY GLY A . n A 1 33 TRP 33 32 32 TRP TRP A . n A 1 34 ALA 34 33 33 ALA ALA A . n A 1 35 LYS 35 34 34 LYS LYS A . n A 1 36 VAL 36 35 35 VAL VAL A . n A 1 37 LYS 37 36 36 LYS LYS A . n A 1 38 ASN 38 37 37 ASN ASN A . n A 1 39 ASN 39 38 38 ASN ASN A . n A 1 40 TRP 40 39 39 TRP TRP A . n A 1 41 GLU 41 40 40 GLU GLU A . n A 1 42 PRO 42 41 41 PRO PRO A . n A 1 43 VAL 43 42 42 VAL VAL A . n A 1 44 ASP 44 43 43 ASP ASP A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 TYR 46 45 45 TYR TYR A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 GLN 51 50 50 GLN GLN A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 ILE 54 53 53 ILE ILE A . n A 1 55 ILE 55 54 54 ILE ILE A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 ALA 57 56 56 ALA ALA A . n A 1 58 MET 58 57 57 MET MET A . n A 1 59 SER 59 58 58 SER SER A . n A 1 60 MET 60 59 59 MET MET A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 GLY 63 62 62 GLY GLY A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 PRO 66 65 65 PRO PRO A . n A 1 67 THR 67 66 66 THR THR A . n A 1 68 ASP 68 67 67 ASP ASP A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 LYS 70 69 69 LYS LYS A . n A 1 71 PHE 71 70 70 PHE PHE A . n A 1 72 ALA 72 71 71 ALA ALA A . n A 1 73 TYR 73 72 72 TYR TYR A . n A 1 74 ALA 74 73 73 ALA ALA A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 LYS 76 75 75 LYS LYS A . n A 1 77 GLY 77 76 76 GLY GLY A . n A 1 78 PRO 78 77 77 PRO PRO A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 MET 80 79 79 MET MET A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 THR 83 82 82 THR THR A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 VAL 85 84 84 VAL VAL A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 LEU 87 86 86 LEU LEU A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 ASP 89 88 88 ASP ASP A . n A 1 90 ARG 90 89 89 ARG ARG A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 VAL 92 91 91 VAL VAL A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 ALA 95 94 94 ALA ALA A . n A 1 96 VAL 96 95 95 VAL VAL A . n A 1 97 LYS 97 96 96 LYS LYS A . n A 1 98 ALA 98 97 97 ALA ALA A . n A 1 99 LEU 99 98 98 LEU LEU A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 ARG 102 101 101 ARG ARG A . n A 1 103 ALA 103 102 102 ALA ALA A . n A 1 104 TYR 104 103 103 TYR TYR A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 LEU 106 105 105 LEU LEU A . n A 1 107 ARG 107 106 106 ARG ARG A . n A 1 108 PHE 108 107 107 PHE PHE A . n A 1 109 ASP 109 108 108 ASP ASP A . n A 1 110 PRO 110 109 109 PRO PRO A . n A 1 111 GLU 111 110 110 GLU GLU A . n A 1 112 VAL 112 111 111 VAL VAL A . n A 1 113 ALA 113 112 112 ALA ALA A . n A 1 114 TYR 114 113 113 TYR TYR A . n A 1 115 SER 115 114 114 SER SER A . n A 1 116 ASP 116 115 115 ASP ASP A . n A 1 117 GLU 117 116 116 GLU GLU A . n A 1 118 PHE 118 117 117 PHE PHE A . n A 1 119 ASN 119 118 118 ASN ASN A . n A 1 120 THR 120 119 119 THR THR A . n A 1 121 THR 121 120 120 THR THR A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 GLN 123 122 122 GLN GLN A . n A 1 124 ASP 124 123 123 ASP ASP A . n A 1 125 HIS 125 124 124 HIS HIS A . n A 1 126 GLY 126 125 125 GLY GLY A . n A 1 127 TYR 127 126 126 TYR TYR A . n A 1 128 VAL 128 127 127 VAL VAL A . n A 1 129 THR 129 128 128 THR THR A . n A 1 130 ARG 130 129 129 ARG ARG A . n A 1 131 ASN 131 130 130 ASN ASN A . n A 1 132 ARG 132 131 131 ARG ARG A . n A 1 133 ASN 133 132 132 ASN ASN A . n A 1 134 VAL 134 133 133 VAL VAL A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 ASP 136 135 135 ASP ASP A . n A 1 137 ALA 137 136 136 ALA ALA A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 MET 139 138 138 MET MET A . n A 1 140 HIS 140 139 139 HIS HIS A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 THR 142 141 141 THR THR A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 GLN 144 143 143 GLN GLN A . n A 1 145 PRO 145 144 144 PRO PRO A . n A 1 146 ARG 146 145 145 ARG ARG A . n A 1 147 LEU 147 146 146 LEU LEU A . n A 1 148 ASN 148 147 147 ASN ASN A . n A 1 149 MET 149 148 148 MET MET A . n A 1 150 VAL 150 149 149 VAL VAL A . n A 1 151 LEU 151 150 150 LEU LEU A . n A 1 152 ASP 152 151 151 ASP ASP A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 THR 154 153 153 THR THR A . n A 1 155 LYS 155 154 154 LYS LYS A . n A 1 156 PHE 156 155 155 PHE PHE A . n A 1 157 PRO 157 156 156 PRO PRO A . n A 1 158 ASP 158 157 157 ASP ASP A . n A 1 159 ALA 159 158 158 ALA ALA A . n A 1 160 LYS 160 159 159 LYS LYS A . n A 1 161 THR 161 160 160 THR THR A . n A 1 162 THR 162 161 161 THR THR A . n A 1 163 LEU 163 162 162 LEU LEU A . n A 1 164 ASP 164 163 163 ASP ASP A . n A 1 165 LEU 165 164 164 LEU LEU A . n A 1 166 TYR 166 165 165 TYR TYR A . n A 1 167 PRO 167 166 166 PRO PRO A . n A 1 168 SER 168 167 167 SER SER A . n A 1 169 LYS 169 168 168 LYS LYS A . n A 1 170 THR 170 169 169 THR THR A . n A 1 171 LYS 171 170 170 LYS LYS A . n A 1 172 SER 172 171 171 SER SER A . n A 1 173 LYS 173 172 172 LYS LYS A . n A 1 174 ILE 174 173 173 ILE ILE A . n A 1 175 LYS 175 174 174 LYS LYS A . n A 1 176 ARG 176 175 175 ARG ARG A . n A 1 177 PRO 177 176 176 PRO PRO A . n A 1 178 PHE 178 177 177 PHE PHE A . n A 1 179 ARG 179 178 178 ARG ARG A . n A 1 180 ASP 180 179 179 ASP ASP A . n A 1 181 GLY 181 180 180 GLY GLY A . n A 1 182 VAL 182 181 181 VAL VAL A . n A 1 183 GLU 183 182 182 GLU GLU A . n A 1 184 VAL 184 183 183 VAL VAL A . n A 1 185 HIS 185 184 184 HIS HIS A . n A 1 186 SER 186 185 185 SER SER A . n A 1 187 GLY 187 186 186 GLY GLY A . n A 1 188 ASN 188 187 187 ASN ASN A . n A 1 189 SER 189 188 188 SER SER A . n A 1 190 ALA 190 189 189 ALA ALA A . n A 1 191 THR 191 190 190 THR THR A . n A 1 192 GLU 192 191 191 GLU GLU A . n A 1 193 LEU 193 192 192 LEU LEU A . n A 1 194 ASP 194 193 193 ASP ASP A . n A 1 195 GLU 195 194 194 GLU GLU A . n A 1 196 PHE 196 195 195 PHE PHE A . n A 1 197 PHE 197 196 196 PHE PHE A . n A 1 198 LYS 198 197 197 LYS LYS A . n A 1 199 THR 199 198 198 THR THR A . n A 1 200 TYR 200 199 199 TYR TYR A . n A 1 201 THR 201 200 200 THR THR A . n A 1 202 THR 202 201 201 THR THR A . n A 1 203 MET 203 202 202 MET MET A . n A 1 204 ALA 204 203 203 ALA ALA A . n A 1 205 GLU 205 204 204 GLU GLU A . n A 1 206 ARG 206 205 205 ARG ARG A . n A 1 207 HIS 207 206 206 HIS HIS A . n A 1 208 GLY 208 207 207 GLY GLY A . n A 1 209 ILE 209 208 208 ILE ILE A . n A 1 210 THR 210 209 209 THR THR A . n A 1 211 HIS 211 210 210 HIS HIS A . n A 1 212 ARG 212 211 211 ARG ARG A . n A 1 213 PRO 213 212 212 PRO PRO A . n A 1 214 ILE 214 213 213 ILE ILE A . n A 1 215 GLU 215 214 214 GLU GLU A . n A 1 216 TYR 216 215 215 TYR TYR A . n A 1 217 PHE 217 216 216 PHE PHE A . n A 1 218 GLN 218 217 217 GLN GLN A . n A 1 219 ARG 219 218 218 ARG ARG A . n A 1 220 MET 220 219 219 MET MET A . n A 1 221 GLN 221 220 220 GLN GLN A . n A 1 222 ALA 222 221 221 ALA ALA A . n A 1 223 ALA 223 222 222 ALA ALA A . n A 1 224 PHE 224 223 223 PHE PHE A . n A 1 225 ASP 225 224 224 ASP ASP A . n A 1 226 ALA 226 225 225 ALA ALA A . n A 1 227 ASP 227 226 226 ASP ASP A . n A 1 228 THR 228 227 227 THR THR A . n A 1 229 MET 229 228 228 MET MET A . n A 1 230 ARG 230 229 229 ARG ARG A . n A 1 231 ILE 231 230 230 ILE ILE A . n A 1 232 PHE 232 231 231 PHE PHE A . n A 1 233 VAL 233 232 232 VAL VAL A . n A 1 234 ALA 234 233 233 ALA ALA A . n A 1 235 GLU 235 234 234 GLU GLU A . n A 1 236 ARG 236 235 235 ARG ARG A . n A 1 237 GLU 237 236 236 GLU GLU A . n A 1 238 GLY 238 237 237 GLY GLY A . n A 1 239 LYS 239 238 238 LYS LYS A . n A 1 240 LEU 240 239 239 LEU LEU A . n A 1 241 LEU 241 240 240 LEU LEU A . n A 1 242 SER 242 241 241 SER SER A . n A 1 243 THR 243 242 242 THR THR A . n A 1 244 GLY 244 243 243 GLY GLY A . n A 1 245 ILE 245 244 244 ILE ILE A . n A 1 246 ALA 246 245 245 ALA ALA A . n A 1 247 LEU 247 246 246 LEU LEU A . n A 1 248 LYS 248 247 247 LYS LYS A . n A 1 249 TYR 249 248 248 TYR TYR A . n A 1 250 GLY 250 249 249 GLY GLY A . n A 1 251 ARG 251 250 250 ARG ARG A . n A 1 252 LYS 252 251 251 LYS LYS A . n A 1 253 ILE 253 252 252 ILE ILE A . n A 1 254 TRP 254 253 253 TRP TRP A . n A 1 255 TYR 255 254 254 TYR TYR A . n A 1 256 MET 256 255 255 MET MET A . n A 1 257 TYR 257 256 256 TYR TYR A . n A 1 258 ALA 258 257 257 ALA ALA A . n A 1 259 GLY 259 258 258 GLY GLY A . n A 1 260 SER 260 259 259 SER SER A . n A 1 261 MET 261 260 260 MET MET A . n A 1 262 ASP 262 261 261 ASP ASP A . n A 1 263 GLY 263 262 262 GLY GLY A . n A 1 264 ASN 264 263 263 ASN ASN A . n A 1 265 THR 265 264 264 THR THR A . n A 1 266 TYR 266 265 265 TYR TYR A . n A 1 267 TYR 267 266 266 TYR TYR A . n A 1 268 ALA 268 267 267 ALA ALA A . n A 1 269 PRO 269 268 268 PRO PRO A . n A 1 270 TYR 270 269 269 TYR TYR A . n A 1 271 ALA 271 270 270 ALA ALA A . n A 1 272 VAL 272 271 271 VAL VAL A . n A 1 273 GLN 273 272 272 GLN GLN A . n A 1 274 SER 274 273 273 SER SER A . n A 1 275 GLU 275 274 274 GLU GLU A . n A 1 276 MET 276 275 275 MET MET A . n A 1 277 ILE 277 276 276 ILE ILE A . n A 1 278 GLN 278 277 277 GLN GLN A . n A 1 279 TRP 279 278 278 TRP TRP A . n A 1 280 ALA 280 279 279 ALA ALA A . n A 1 281 LEU 281 280 280 LEU LEU A . n A 1 282 ASP 282 281 281 ASP ASP A . n A 1 283 THR 283 282 282 THR THR A . n A 1 284 ASN 284 283 283 ASN ASN A . n A 1 285 THR 285 284 284 THR THR A . n A 1 286 ASP 286 285 285 ASP ASP A . n A 1 287 LEU 287 286 286 LEU LEU A . n A 1 288 TYR 288 287 287 TYR TYR A . n A 1 289 ASP 289 288 288 ASP ASP A . n A 1 290 LEU 290 289 289 LEU LEU A . n A 1 291 GLY 291 290 290 GLY GLY A . n A 1 292 GLY 292 291 291 GLY GLY A . n A 1 293 ILE 293 292 292 ILE ILE A . n A 1 294 GLU 294 293 293 GLU GLU A . n A 1 295 SER 295 294 294 SER SER A . n A 1 296 GLU 296 295 295 GLU GLU A . n A 1 297 SER 297 296 296 SER SER A . n A 1 298 THR 298 297 297 THR THR A . n A 1 299 ASP 299 298 298 ASP ASP A . n A 1 300 ASP 300 299 299 ASP ASP A . n A 1 301 SER 301 300 300 SER SER A . n A 1 302 LEU 302 301 301 LEU LEU A . n A 1 303 TYR 303 302 302 TYR TYR A . n A 1 304 VAL 304 303 303 VAL VAL A . n A 1 305 PHE 305 304 304 PHE PHE A . n A 1 306 LYS 306 305 305 LYS LYS A . n A 1 307 HIS 307 306 306 HIS HIS A . n A 1 308 VAL 308 307 307 VAL VAL A . n A 1 309 PHE 309 308 308 PHE PHE A . n A 1 310 VAL 310 309 309 VAL VAL A . n A 1 311 LYS 311 310 310 LYS LYS A . n A 1 312 ASP 312 311 311 ASP ASP A . n A 1 313 ALA 313 312 312 ALA ALA A . n A 1 314 PRO 314 313 313 PRO PRO A . n A 1 315 ARG 315 314 314 ARG ARG A . n A 1 316 GLU 316 315 315 GLU GLU A . n A 1 317 TYR 317 316 316 TYR TYR A . n A 1 318 ILE 318 317 317 ILE ILE A . n A 1 319 GLY 319 318 318 GLY GLY A . n A 1 320 GLU 320 319 319 GLU GLU A . n A 1 321 ILE 321 320 320 ILE ILE A . n A 1 322 ASP 322 321 321 ASP ASP A . n A 1 323 LYS 323 322 322 LYS LYS A . n A 1 324 VAL 324 323 323 VAL VAL A . n A 1 325 LEU 325 324 324 LEU LEU A . n A 1 326 ASP 326 325 325 ASP ASP A . n A 1 327 PRO 327 326 326 PRO PRO A . n A 1 328 GLU 328 327 327 GLU GLU A . n A 1 329 VAL 329 328 328 VAL VAL A . n A 1 330 TYR 330 329 329 TYR TYR A . n A 1 331 ALA 331 330 330 ALA ALA A . n A 1 332 GLU 332 331 331 GLU GLU A . n A 1 333 LEU 333 332 332 LEU LEU A . n A 1 334 VAL 334 333 333 VAL VAL A . n A 1 335 LYS 335 334 334 LYS LYS A . n A 1 336 ASP 336 335 335 ASP ASP A . n A 1 337 GLY 337 336 336 GLY GLY A . n A 1 338 HIS 338 337 337 HIS ALA A . n A 1 339 HIS 339 338 ? ? ? A . n A 1 340 HIS 340 339 ? ? ? A . n A 1 341 HIS 341 340 ? ? ? A . n A 1 342 HIS 342 341 ? ? ? A . n A 1 343 HIS 343 342 ? ? ? A . n B 2 1 ALA 1 3 1 ALA UAG B . n B 2 2 FGA 2 4 1 FGA UAG B . n B 2 3 CYS 3 5 3 CYS CYS B . n B 2 4 DAL 4 6 4 DAL DAL B . n B 2 5 DAL 5 7 5 DAL DAL B . n C 3 1 C 1 8 7 C CR C . n C 3 2 C 2 9 8 C CR C . n C 3 3 A9Z 3 10 6 A9Z A9Z C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL 1 402 1 GOL GOL A . E 5 UDP 1 101 1 UDP UAG B . F 6 MUB 1 102 1 MUB UAG B . G 7 HOH 1 501 1 HOH HOH A . G 7 HOH 2 502 2 HOH HOH A . G 7 HOH 3 503 3 HOH HOH A . G 7 HOH 4 504 5 HOH HOH A . G 7 HOH 5 505 6 HOH HOH A . G 7 HOH 6 506 7 HOH HOH A . G 7 HOH 7 507 8 HOH HOH A . G 7 HOH 8 508 9 HOH HOH A . G 7 HOH 9 509 10 HOH HOH A . G 7 HOH 10 510 11 HOH HOH A . G 7 HOH 11 511 12 HOH HOH A . G 7 HOH 12 512 13 HOH HOH A . G 7 HOH 13 513 14 HOH HOH A . G 7 HOH 14 514 15 HOH HOH A . G 7 HOH 15 515 16 HOH HOH A . G 7 HOH 16 516 17 HOH HOH A . G 7 HOH 17 517 18 HOH HOH A . G 7 HOH 18 518 19 HOH HOH A . G 7 HOH 19 519 20 HOH HOH A . G 7 HOH 20 520 21 HOH HOH A . G 7 HOH 21 521 22 HOH HOH A . G 7 HOH 22 522 23 HOH HOH A . G 7 HOH 23 523 24 HOH HOH A . G 7 HOH 24 524 25 HOH HOH A . G 7 HOH 25 525 26 HOH HOH A . G 7 HOH 26 526 27 HOH HOH A . G 7 HOH 27 527 28 HOH HOH A . G 7 HOH 28 528 29 HOH HOH A . G 7 HOH 29 529 30 HOH HOH A . G 7 HOH 30 530 31 HOH HOH A . G 7 HOH 31 531 32 HOH HOH A . G 7 HOH 32 532 33 HOH HOH A . G 7 HOH 33 533 34 HOH HOH A . G 7 HOH 34 534 35 HOH HOH A . G 7 HOH 35 535 36 HOH HOH A . G 7 HOH 36 536 37 HOH HOH A . G 7 HOH 37 537 38 HOH HOH A . G 7 HOH 38 538 39 HOH HOH A . G 7 HOH 39 539 40 HOH HOH A . G 7 HOH 40 540 41 HOH HOH A . G 7 HOH 41 541 42 HOH HOH A . G 7 HOH 42 542 43 HOH HOH A . G 7 HOH 43 543 44 HOH HOH A . G 7 HOH 44 544 45 HOH HOH A . G 7 HOH 45 545 46 HOH HOH A . G 7 HOH 46 546 48 HOH HOH A . G 7 HOH 47 547 49 HOH HOH A . G 7 HOH 48 548 50 HOH HOH A . G 7 HOH 49 549 51 HOH HOH A . G 7 HOH 50 550 52 HOH HOH A . G 7 HOH 51 551 53 HOH HOH A . G 7 HOH 52 552 54 HOH HOH A . G 7 HOH 53 553 56 HOH HOH A . G 7 HOH 54 554 58 HOH HOH A . G 7 HOH 55 555 59 HOH HOH A . G 7 HOH 56 556 60 HOH HOH A . G 7 HOH 57 557 61 HOH HOH A . G 7 HOH 58 558 62 HOH HOH A . G 7 HOH 59 559 63 HOH HOH A . G 7 HOH 60 560 64 HOH HOH A . G 7 HOH 61 561 65 HOH HOH A . G 7 HOH 62 562 66 HOH HOH A . G 7 HOH 63 563 67 HOH HOH A . G 7 HOH 64 564 68 HOH HOH A . G 7 HOH 65 565 69 HOH HOH A . G 7 HOH 66 566 70 HOH HOH A . G 7 HOH 67 567 71 HOH HOH A . G 7 HOH 68 568 72 HOH HOH A . G 7 HOH 69 569 73 HOH HOH A . G 7 HOH 70 570 74 HOH HOH A . G 7 HOH 71 571 75 HOH HOH A . G 7 HOH 72 572 76 HOH HOH A . G 7 HOH 73 573 77 HOH HOH A . G 7 HOH 74 574 78 HOH HOH A . G 7 HOH 75 575 79 HOH HOH A . G 7 HOH 76 576 80 HOH HOH A . G 7 HOH 77 577 81 HOH HOH A . G 7 HOH 78 578 83 HOH HOH A . G 7 HOH 79 579 84 HOH HOH A . G 7 HOH 80 580 85 HOH HOH A . G 7 HOH 81 581 86 HOH HOH A . G 7 HOH 82 582 87 HOH HOH A . G 7 HOH 83 583 88 HOH HOH A . G 7 HOH 84 584 89 HOH HOH A . G 7 HOH 85 585 90 HOH HOH A . G 7 HOH 86 586 91 HOH HOH A . G 7 HOH 87 587 92 HOH HOH A . G 7 HOH 88 588 93 HOH HOH A . G 7 HOH 89 589 94 HOH HOH A . G 7 HOH 90 590 95 HOH HOH A . G 7 HOH 91 591 96 HOH HOH A . G 7 HOH 92 592 98 HOH HOH A . G 7 HOH 93 593 99 HOH HOH A . G 7 HOH 94 594 100 HOH HOH A . G 7 HOH 95 595 101 HOH HOH A . G 7 HOH 96 596 102 HOH HOH A . G 7 HOH 97 597 103 HOH HOH A . G 7 HOH 98 598 104 HOH HOH A . G 7 HOH 99 599 105 HOH HOH A . G 7 HOH 100 600 106 HOH HOH A . G 7 HOH 101 601 107 HOH HOH A . G 7 HOH 102 602 109 HOH HOH A . G 7 HOH 103 603 110 HOH HOH A . G 7 HOH 104 604 111 HOH HOH A . G 7 HOH 105 605 112 HOH HOH A . G 7 HOH 106 606 113 HOH HOH A . G 7 HOH 107 607 114 HOH HOH A . G 7 HOH 108 608 115 HOH HOH A . G 7 HOH 109 609 116 HOH HOH A . G 7 HOH 110 610 117 HOH HOH A . G 7 HOH 111 611 118 HOH HOH A . G 7 HOH 112 612 119 HOH HOH A . G 7 HOH 113 613 120 HOH HOH A . G 7 HOH 114 614 121 HOH HOH A . G 7 HOH 115 615 122 HOH HOH A . G 7 HOH 116 616 123 HOH HOH A . G 7 HOH 117 617 124 HOH HOH A . G 7 HOH 118 618 125 HOH HOH A . G 7 HOH 119 619 126 HOH HOH A . G 7 HOH 120 620 127 HOH HOH A . G 7 HOH 121 621 129 HOH HOH A . G 7 HOH 122 622 130 HOH HOH A . G 7 HOH 123 623 131 HOH HOH A . G 7 HOH 124 624 132 HOH HOH A . G 7 HOH 125 625 133 HOH HOH A . G 7 HOH 126 626 134 HOH HOH A . G 7 HOH 127 627 135 HOH HOH A . G 7 HOH 128 628 136 HOH HOH A . G 7 HOH 129 629 137 HOH HOH A . G 7 HOH 130 630 138 HOH HOH A . G 7 HOH 131 631 139 HOH HOH A . G 7 HOH 132 632 140 HOH HOH A . G 7 HOH 133 633 141 HOH HOH A . G 7 HOH 134 634 142 HOH HOH A . G 7 HOH 135 635 143 HOH HOH A . G 7 HOH 136 636 144 HOH HOH A . G 7 HOH 137 637 145 HOH HOH A . G 7 HOH 138 638 147 HOH HOH A . G 7 HOH 139 639 148 HOH HOH A . G 7 HOH 140 640 149 HOH HOH A . G 7 HOH 141 641 150 HOH HOH A . G 7 HOH 142 642 151 HOH HOH A . G 7 HOH 143 643 152 HOH HOH A . G 7 HOH 144 644 153 HOH HOH A . G 7 HOH 145 645 154 HOH HOH A . G 7 HOH 146 646 155 HOH HOH A . G 7 HOH 147 647 156 HOH HOH A . G 7 HOH 148 648 157 HOH HOH A . G 7 HOH 149 649 158 HOH HOH A . G 7 HOH 150 650 159 HOH HOH A . G 7 HOH 151 651 160 HOH HOH A . G 7 HOH 152 652 161 HOH HOH A . G 7 HOH 153 653 162 HOH HOH A . G 7 HOH 154 654 163 HOH HOH A . G 7 HOH 155 655 164 HOH HOH A . G 7 HOH 156 656 165 HOH HOH A . G 7 HOH 157 657 166 HOH HOH A . G 7 HOH 158 658 167 HOH HOH A . G 7 HOH 159 659 168 HOH HOH A . G 7 HOH 160 660 169 HOH HOH A . G 7 HOH 161 661 170 HOH HOH A . G 7 HOH 162 662 171 HOH HOH A . G 7 HOH 163 663 172 HOH HOH A . G 7 HOH 164 664 173 HOH HOH A . G 7 HOH 165 665 174 HOH HOH A . G 7 HOH 166 666 175 HOH HOH A . G 7 HOH 167 667 176 HOH HOH A . G 7 HOH 168 668 177 HOH HOH A . G 7 HOH 169 669 178 HOH HOH A . G 7 HOH 170 670 179 HOH HOH A . G 7 HOH 171 671 180 HOH HOH A . G 7 HOH 172 672 181 HOH HOH A . G 7 HOH 173 673 183 HOH HOH A . G 7 HOH 174 674 184 HOH HOH A . G 7 HOH 175 675 185 HOH HOH A . G 7 HOH 176 676 186 HOH HOH A . G 7 HOH 177 677 187 HOH HOH A . G 7 HOH 178 678 188 HOH HOH A . G 7 HOH 179 679 189 HOH HOH A . G 7 HOH 180 680 190 HOH HOH A . G 7 HOH 181 681 191 HOH HOH A . G 7 HOH 182 682 192 HOH HOH A . G 7 HOH 183 683 193 HOH HOH A . G 7 HOH 184 684 194 HOH HOH A . G 7 HOH 185 685 195 HOH HOH A . G 7 HOH 186 686 196 HOH HOH A . G 7 HOH 187 687 197 HOH HOH A . G 7 HOH 188 688 198 HOH HOH A . G 7 HOH 189 689 199 HOH HOH A . G 7 HOH 190 690 200 HOH HOH A . G 7 HOH 191 691 201 HOH HOH A . G 7 HOH 192 692 202 HOH HOH A . G 7 HOH 193 693 204 HOH HOH A . G 7 HOH 194 694 205 HOH HOH A . G 7 HOH 195 695 206 HOH HOH A . G 7 HOH 196 696 207 HOH HOH A . G 7 HOH 197 697 208 HOH HOH A . G 7 HOH 198 698 209 HOH HOH A . G 7 HOH 199 699 210 HOH HOH A . G 7 HOH 200 700 211 HOH HOH A . G 7 HOH 201 701 212 HOH HOH A . G 7 HOH 202 702 213 HOH HOH A . G 7 HOH 203 703 214 HOH HOH A . G 7 HOH 204 704 215 HOH HOH A . G 7 HOH 205 705 216 HOH HOH A . G 7 HOH 206 706 217 HOH HOH A . G 7 HOH 207 707 218 HOH HOH A . G 7 HOH 208 708 219 HOH HOH A . G 7 HOH 209 709 220 HOH HOH A . G 7 HOH 210 710 221 HOH HOH A . G 7 HOH 211 711 222 HOH HOH A . G 7 HOH 212 712 223 HOH HOH A . G 7 HOH 213 713 224 HOH HOH A . G 7 HOH 214 714 225 HOH HOH A . G 7 HOH 215 715 226 HOH HOH A . G 7 HOH 216 716 227 HOH HOH A . G 7 HOH 217 717 228 HOH HOH A . G 7 HOH 218 718 229 HOH HOH A . G 7 HOH 219 719 230 HOH HOH A . G 7 HOH 220 720 232 HOH HOH A . G 7 HOH 221 721 233 HOH HOH A . G 7 HOH 222 722 234 HOH HOH A . G 7 HOH 223 723 235 HOH HOH A . G 7 HOH 224 724 237 HOH HOH A . G 7 HOH 225 725 239 HOH HOH A . G 7 HOH 226 726 240 HOH HOH A . G 7 HOH 227 727 242 HOH HOH A . G 7 HOH 228 728 243 HOH HOH A . G 7 HOH 229 729 244 HOH HOH A . G 7 HOH 230 730 245 HOH HOH A . G 7 HOH 231 731 246 HOH HOH A . G 7 HOH 232 732 247 HOH HOH A . G 7 HOH 233 733 248 HOH HOH A . G 7 HOH 234 734 250 HOH HOH A . G 7 HOH 235 735 251 HOH HOH A . G 7 HOH 236 736 253 HOH HOH A . G 7 HOH 237 737 254 HOH HOH A . G 7 HOH 238 738 255 HOH HOH A . G 7 HOH 239 739 256 HOH HOH A . G 7 HOH 240 740 257 HOH HOH A . G 7 HOH 241 741 258 HOH HOH A . G 7 HOH 242 742 259 HOH HOH A . G 7 HOH 243 743 260 HOH HOH A . G 7 HOH 244 744 261 HOH HOH A . G 7 HOH 245 745 263 HOH HOH A . G 7 HOH 246 746 264 HOH HOH A . G 7 HOH 247 747 265 HOH HOH A . G 7 HOH 248 748 266 HOH HOH A . G 7 HOH 249 749 267 HOH HOH A . G 7 HOH 250 750 268 HOH HOH A . G 7 HOH 251 751 269 HOH HOH A . G 7 HOH 252 752 270 HOH HOH A . G 7 HOH 253 753 271 HOH HOH A . G 7 HOH 254 754 272 HOH HOH A . G 7 HOH 255 755 273 HOH HOH A . G 7 HOH 256 756 274 HOH HOH A . G 7 HOH 257 757 275 HOH HOH A . G 7 HOH 258 758 276 HOH HOH A . G 7 HOH 259 759 277 HOH HOH A . G 7 HOH 260 760 278 HOH HOH A . G 7 HOH 261 761 279 HOH HOH A . G 7 HOH 262 762 280 HOH HOH A . G 7 HOH 263 763 281 HOH HOH A . G 7 HOH 264 764 282 HOH HOH A . G 7 HOH 265 765 283 HOH HOH A . G 7 HOH 266 766 285 HOH HOH A . G 7 HOH 267 767 286 HOH HOH A . G 7 HOH 268 768 287 HOH HOH A . G 7 HOH 269 769 288 HOH HOH A . G 7 HOH 270 770 289 HOH HOH A . G 7 HOH 271 771 290 HOH HOH A . G 7 HOH 272 772 291 HOH HOH A . G 7 HOH 273 773 292 HOH HOH A . G 7 HOH 274 774 293 HOH HOH A . G 7 HOH 275 775 294 HOH HOH A . G 7 HOH 276 776 296 HOH HOH A . G 7 HOH 277 777 4 HOH HOH A . G 7 HOH 278 778 108 HOH HOH A . G 7 HOH 279 779 284 HOH HOH A . H 7 HOH 1 201 47 HOH HOH B . H 7 HOH 2 202 55 HOH HOH B . H 7 HOH 3 203 57 HOH HOH B . H 7 HOH 4 204 128 HOH HOH B . H 7 HOH 5 205 182 HOH HOH B . H 7 HOH 6 206 236 HOH HOH B . H 7 HOH 7 207 238 HOH HOH B . H 7 HOH 8 208 241 HOH HOH B . H 7 HOH 9 209 249 HOH HOH B . H 7 HOH 10 210 252 HOH HOH B . H 7 HOH 11 211 262 HOH HOH B . H 7 HOH 12 212 295 HOH HOH B . I 7 HOH 1 101 82 HOH HOH C . I 7 HOH 2 102 97 HOH HOH C . I 7 HOH 3 103 146 HOH HOH C . I 7 HOH 4 104 203 HOH HOH C . I 7 HOH 5 105 231 HOH HOH C . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id C _pdbx_struct_mod_residue.label_comp_id A9Z _pdbx_struct_mod_residue.label_seq_id 3 _pdbx_struct_mod_residue.auth_asym_id C _pdbx_struct_mod_residue.auth_comp_id A9Z _pdbx_struct_mod_residue.auth_seq_id 10 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3630 ? 1 MORE -16 ? 1 'SSA (A^2)' 15040 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-03 2 'Structure model' 1 1 2013-08-07 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-11-08 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Refinement description' 11 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_chem_comp_identifier 5 3 'Structure model' pdbx_entity_nonpoly 6 3 'Structure model' pdbx_validate_polymer_linkage 7 3 'Structure model' pdbx_validate_rmsd_angle 8 3 'Structure model' struct_conn 9 3 'Structure model' struct_ref_seq_dif 10 3 'Structure model' struct_site 11 3 'Structure model' struct_site_gen 12 4 'Structure model' chem_comp 13 4 'Structure model' chem_comp_atom 14 4 'Structure model' chem_comp_bond 15 4 'Structure model' database_2 16 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_chem_comp.name' 6 3 'Structure model' '_chem_comp.type' 7 3 'Structure model' '_entity.pdbx_description' 8 3 'Structure model' '_pdbx_entity_nonpoly.name' 9 3 'Structure model' '_pdbx_validate_rmsd_angle.auth_atom_id_3' 10 3 'Structure model' '_struct_conn.pdbx_dist_value' 11 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 25 3 'Structure model' '_struct_ref_seq_dif.details' 26 4 'Structure model' '_chem_comp.pdbx_synonyms' 27 4 'Structure model' '_database_2.pdbx_DOI' 28 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MX 'data collection' Cube ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 THR _pdbx_validate_close_contact.auth_seq_id_1 64 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 573 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CE2 A TRP 278 ? ? CD2 A TRP 278 ? ? 1.491 1.409 0.082 0.012 N 2 1 "O3'" C C 9 ? ? P C A9Z 10 ? ? 1.726 1.607 0.119 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG A TYR 23 ? ? CD1 A TYR 23 ? ? CE1 A TYR 23 ? ? 116.16 121.30 -5.14 0.80 N 2 1 CB A ASP 88 ? ? CG A ASP 88 ? ? OD1 A ASP 88 ? ? 126.03 118.30 7.73 0.90 N 3 1 NE A ARG 89 ? ? CZ A ARG 89 ? ? NH1 A ARG 89 ? ? 123.94 120.30 3.64 0.50 N 4 1 CB A LEU 90 ? ? CG A LEU 90 ? ? CD2 A LEU 90 ? ? 98.54 111.00 -12.46 1.70 N 5 1 NE A ARG 101 ? ? CZ A ARG 101 ? ? NH1 A ARG 101 ? ? 116.40 120.30 -3.90 0.50 N 6 1 NE A ARG 145 ? ? CZ A ARG 145 ? ? NH2 A ARG 145 ? ? 117.02 120.30 -3.28 0.50 N 7 1 CA A MET 202 ? ? CB A MET 202 ? ? CG A MET 202 ? ? 126.52 113.30 13.22 1.70 N 8 1 NE A ARG 211 ? ? CZ A ARG 211 ? ? NH2 A ARG 211 ? ? 117.09 120.30 -3.21 0.50 N 9 1 "C3'" C C 9 ? ? "O3'" C C 9 ? ? P C A9Z 10 ? ? 107.73 119.70 -11.97 1.20 Y 10 1 "O3'" C C 9 ? ? P C A9Z 10 ? ? OP1 C A9Z 10 ? ? 121.27 110.50 10.77 1.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 79 ? ? 172.16 -178.19 2 1 ASN A 130 ? ? -151.32 -102.40 3 1 LEU A 240 ? ? -120.24 -54.20 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 337 ? CG ? A HIS 338 CG 2 1 Y 1 A HIS 337 ? ND1 ? A HIS 338 ND1 3 1 Y 1 A HIS 337 ? CD2 ? A HIS 338 CD2 4 1 Y 1 A HIS 337 ? CE1 ? A HIS 338 CE1 5 1 Y 1 A HIS 337 ? NE2 ? A HIS 338 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A HIS 338 ? A HIS 339 3 1 Y 1 A HIS 339 ? A HIS 340 4 1 Y 1 A HIS 340 ? A HIS 341 5 1 Y 1 A HIS 341 ? A HIS 342 6 1 Y 1 A HIS 342 ? A HIS 343 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A9Z OP1 O N N 1 A9Z P P N N 2 A9Z OP2 O N N 3 A9Z "O5'" O N N 4 A9Z "C5'" C N N 5 A9Z "C4'" C N R 6 A9Z "C3'" C N S 7 A9Z "O3'" O N N 8 A9Z "C2'" C N R 9 A9Z N1T N Y N 10 A9Z C5T C Y N 11 A9Z C4T C Y N 12 A9Z C6T C N N 13 A9Z C7T C N N 14 A9Z N3T N Y N 15 A9Z N2T N Y N 16 A9Z "C1'" C N R 17 A9Z "O4'" O N N 18 A9Z N9 N Y N 19 A9Z C4 C Y N 20 A9Z C5 C Y N 21 A9Z N7 N Y N 22 A9Z C8 C Y N 23 A9Z N3 N Y N 24 A9Z C2 C Y N 25 A9Z N1 N Y N 26 A9Z C6 C Y N 27 A9Z N6 N N N 28 A9Z OP3 O N N 29 A9Z H1 H N N 30 A9Z H2 H N N 31 A9Z H3 H N N 32 A9Z H4 H N N 33 A9Z H5 H N N 34 A9Z H6 H N N 35 A9Z H7 H N N 36 A9Z H8 H N N 37 A9Z H9 H N N 38 A9Z H10 H N N 39 A9Z H11 H N N 40 A9Z H12 H N N 41 A9Z H13 H N N 42 A9Z H14 H N N 43 A9Z H15 H N N 44 A9Z H16 H N N 45 A9Z H17 H N N 46 A9Z H18 H N N 47 A9Z H19 H N N 48 ALA N N N N 49 ALA CA C N S 50 ALA C C N N 51 ALA O O N N 52 ALA CB C N N 53 ALA OXT O N N 54 ALA H H N N 55 ALA H2 H N N 56 ALA HA H N N 57 ALA HB1 H N N 58 ALA HB2 H N N 59 ALA HB3 H N N 60 ALA HXT H N N 61 ARG N N N N 62 ARG CA C N S 63 ARG C C N N 64 ARG O O N N 65 ARG CB C N N 66 ARG CG C N N 67 ARG CD C N N 68 ARG NE N N N 69 ARG CZ C N N 70 ARG NH1 N N N 71 ARG NH2 N N N 72 ARG OXT O N N 73 ARG H H N N 74 ARG H2 H N N 75 ARG HA H N N 76 ARG HB2 H N N 77 ARG HB3 H N N 78 ARG HG2 H N N 79 ARG HG3 H N N 80 ARG HD2 H N N 81 ARG HD3 H N N 82 ARG HE H N N 83 ARG HH11 H N N 84 ARG HH12 H N N 85 ARG HH21 H N N 86 ARG HH22 H N N 87 ARG HXT H N N 88 ASN N N N N 89 ASN CA C N S 90 ASN C C N N 91 ASN O O N N 92 ASN CB C N N 93 ASN CG C N N 94 ASN OD1 O N N 95 ASN ND2 N N N 96 ASN OXT O N N 97 ASN H H N N 98 ASN H2 H N N 99 ASN HA H N N 100 ASN HB2 H N N 101 ASN HB3 H N N 102 ASN HD21 H N N 103 ASN HD22 H N N 104 ASN HXT H N N 105 ASP N N N N 106 ASP CA C N S 107 ASP C C N N 108 ASP O O N N 109 ASP CB C N N 110 ASP CG C N N 111 ASP OD1 O N N 112 ASP OD2 O N N 113 ASP OXT O N N 114 ASP H H N N 115 ASP H2 H N N 116 ASP HA H N N 117 ASP HB2 H N N 118 ASP HB3 H N N 119 ASP HD2 H N N 120 ASP HXT H N N 121 C OP3 O N N 122 C P P N N 123 C OP1 O N N 124 C OP2 O N N 125 C "O5'" O N N 126 C "C5'" C N N 127 C "C4'" C N R 128 C "O4'" O N N 129 C "C3'" C N S 130 C "O3'" O N N 131 C "C2'" C N R 132 C "O2'" O N N 133 C "C1'" C N R 134 C N1 N N N 135 C C2 C N N 136 C O2 O N N 137 C N3 N N N 138 C C4 C N N 139 C N4 N N N 140 C C5 C N N 141 C C6 C N N 142 C HOP3 H N N 143 C HOP2 H N N 144 C "H5'" H N N 145 C "H5''" H N N 146 C "H4'" H N N 147 C "H3'" H N N 148 C "HO3'" H N N 149 C "H2'" H N N 150 C "HO2'" H N N 151 C "H1'" H N N 152 C H41 H N N 153 C H42 H N N 154 C H5 H N N 155 C H6 H N N 156 CYS N N N N 157 CYS CA C N R 158 CYS C C N N 159 CYS O O N N 160 CYS CB C N N 161 CYS SG S N N 162 CYS OXT O N N 163 CYS H H N N 164 CYS H2 H N N 165 CYS HA H N N 166 CYS HB2 H N N 167 CYS HB3 H N N 168 CYS HG H N N 169 CYS HXT H N N 170 DAL N N N N 171 DAL CA C N R 172 DAL CB C N N 173 DAL C C N N 174 DAL O O N N 175 DAL OXT O N N 176 DAL H H N N 177 DAL H2 H N N 178 DAL HA H N N 179 DAL HB1 H N N 180 DAL HB2 H N N 181 DAL HB3 H N N 182 DAL HXT H N N 183 FGA N N N N 184 FGA CA C N R 185 FGA C C N N 186 FGA O O N N 187 FGA CB C N N 188 FGA CG C N N 189 FGA CD C N N 190 FGA OE1 O N N 191 FGA OE2 O N N 192 FGA OXT O N N 193 FGA H H N N 194 FGA H2 H N N 195 FGA HA H N N 196 FGA HB2 H N N 197 FGA HB3 H N N 198 FGA HG2 H N N 199 FGA HG3 H N N 200 FGA HE2 H N N 201 FGA HXT H N N 202 GLN N N N N 203 GLN CA C N S 204 GLN C C N N 205 GLN O O N N 206 GLN CB C N N 207 GLN CG C N N 208 GLN CD C N N 209 GLN OE1 O N N 210 GLN NE2 N N N 211 GLN OXT O N N 212 GLN H H N N 213 GLN H2 H N N 214 GLN HA H N N 215 GLN HB2 H N N 216 GLN HB3 H N N 217 GLN HG2 H N N 218 GLN HG3 H N N 219 GLN HE21 H N N 220 GLN HE22 H N N 221 GLN HXT H N N 222 GLU N N N N 223 GLU CA C N S 224 GLU C C N N 225 GLU O O N N 226 GLU CB C N N 227 GLU CG C N N 228 GLU CD C N N 229 GLU OE1 O N N 230 GLU OE2 O N N 231 GLU OXT O N N 232 GLU H H N N 233 GLU H2 H N N 234 GLU HA H N N 235 GLU HB2 H N N 236 GLU HB3 H N N 237 GLU HG2 H N N 238 GLU HG3 H N N 239 GLU HE2 H N N 240 GLU HXT H N N 241 GLY N N N N 242 GLY CA C N N 243 GLY C C N N 244 GLY O O N N 245 GLY OXT O N N 246 GLY H H N N 247 GLY H2 H N N 248 GLY HA2 H N N 249 GLY HA3 H N N 250 GLY HXT H N N 251 GOL C1 C N N 252 GOL O1 O N N 253 GOL C2 C N N 254 GOL O2 O N N 255 GOL C3 C N N 256 GOL O3 O N N 257 GOL H11 H N N 258 GOL H12 H N N 259 GOL HO1 H N N 260 GOL H2 H N N 261 GOL HO2 H N N 262 GOL H31 H N N 263 GOL H32 H N N 264 GOL HO3 H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 MUB C1 C N S 379 MUB C2 C N R 380 MUB C3 C N R 381 MUB C4 C N S 382 MUB C5 C N R 383 MUB C6 C N N 384 MUB C7 C N N 385 MUB C8 C N N 386 MUB C9 C N R 387 MUB C10 C N N 388 MUB C11 C N N 389 MUB O1 O N N 390 MUB O3 O N N 391 MUB O4 O N N 392 MUB O5 O N N 393 MUB O6 O N N 394 MUB O7 O N N 395 MUB O11 O N N 396 MUB O10 O N N 397 MUB N2 N N N 398 MUB H1 H N N 399 MUB H2 H N N 400 MUB HN2 H N N 401 MUB H81 H N N 402 MUB H82 H N N 403 MUB H83 H N N 404 MUB H3 H N N 405 MUB H9 H N N 406 MUB H111 H N N 407 MUB H112 H N N 408 MUB H113 H N N 409 MUB H4 H N N 410 MUB H5 H N N 411 MUB H61 H N N 412 MUB H62 H N N 413 MUB HO6 H N N 414 MUB HO4 H N N 415 MUB HO11 H N N 416 MUB HO1 H N N 417 PHE N N N N 418 PHE CA C N S 419 PHE C C N N 420 PHE O O N N 421 PHE CB C N N 422 PHE CG C Y N 423 PHE CD1 C Y N 424 PHE CD2 C Y N 425 PHE CE1 C Y N 426 PHE CE2 C Y N 427 PHE CZ C Y N 428 PHE OXT O N N 429 PHE H H N N 430 PHE H2 H N N 431 PHE HA H N N 432 PHE HB2 H N N 433 PHE HB3 H N N 434 PHE HD1 H N N 435 PHE HD2 H N N 436 PHE HE1 H N N 437 PHE HE2 H N N 438 PHE HZ H N N 439 PHE HXT H N N 440 PRO N N N N 441 PRO CA C N S 442 PRO C C N N 443 PRO O O N N 444 PRO CB C N N 445 PRO CG C N N 446 PRO CD C N N 447 PRO OXT O N N 448 PRO H H N N 449 PRO HA H N N 450 PRO HB2 H N N 451 PRO HB3 H N N 452 PRO HG2 H N N 453 PRO HG3 H N N 454 PRO HD2 H N N 455 PRO HD3 H N N 456 PRO HXT H N N 457 SER N N N N 458 SER CA C N S 459 SER C C N N 460 SER O O N N 461 SER CB C N N 462 SER OG O N N 463 SER OXT O N N 464 SER H H N N 465 SER H2 H N N 466 SER HA H N N 467 SER HB2 H N N 468 SER HB3 H N N 469 SER HG H N N 470 SER HXT H N N 471 THR N N N N 472 THR CA C N S 473 THR C C N N 474 THR O O N N 475 THR CB C N R 476 THR OG1 O N N 477 THR CG2 C N N 478 THR OXT O N N 479 THR H H N N 480 THR H2 H N N 481 THR HA H N N 482 THR HB H N N 483 THR HG1 H N N 484 THR HG21 H N N 485 THR HG22 H N N 486 THR HG23 H N N 487 THR HXT H N N 488 TRP N N N N 489 TRP CA C N S 490 TRP C C N N 491 TRP O O N N 492 TRP CB C N N 493 TRP CG C Y N 494 TRP CD1 C Y N 495 TRP CD2 C Y N 496 TRP NE1 N Y N 497 TRP CE2 C Y N 498 TRP CE3 C Y N 499 TRP CZ2 C Y N 500 TRP CZ3 C Y N 501 TRP CH2 C Y N 502 TRP OXT O N N 503 TRP H H N N 504 TRP H2 H N N 505 TRP HA H N N 506 TRP HB2 H N N 507 TRP HB3 H N N 508 TRP HD1 H N N 509 TRP HE1 H N N 510 TRP HE3 H N N 511 TRP HZ2 H N N 512 TRP HZ3 H N N 513 TRP HH2 H N N 514 TRP HXT H N N 515 TYR N N N N 516 TYR CA C N S 517 TYR C C N N 518 TYR O O N N 519 TYR CB C N N 520 TYR CG C Y N 521 TYR CD1 C Y N 522 TYR CD2 C Y N 523 TYR CE1 C Y N 524 TYR CE2 C Y N 525 TYR CZ C Y N 526 TYR OH O N N 527 TYR OXT O N N 528 TYR H H N N 529 TYR H2 H N N 530 TYR HA H N N 531 TYR HB2 H N N 532 TYR HB3 H N N 533 TYR HD1 H N N 534 TYR HD2 H N N 535 TYR HE1 H N N 536 TYR HE2 H N N 537 TYR HH H N N 538 TYR HXT H N N 539 UDP N1 N N N 540 UDP C2 C N N 541 UDP N3 N N N 542 UDP C4 C N N 543 UDP C5 C N N 544 UDP C6 C N N 545 UDP O2 O N N 546 UDP O4 O N N 547 UDP "C1'" C N R 548 UDP "C2'" C N R 549 UDP "O2'" O N N 550 UDP "C3'" C N S 551 UDP "C4'" C N R 552 UDP "O4'" O N N 553 UDP "O3'" O N N 554 UDP "C5'" C N N 555 UDP "O5'" O N N 556 UDP PA P N N 557 UDP O1A O N N 558 UDP O2A O N N 559 UDP O3A O N N 560 UDP PB P N N 561 UDP O1B O N N 562 UDP O2B O N N 563 UDP O3B O N N 564 UDP HN3 H N N 565 UDP H5 H N N 566 UDP H6 H N N 567 UDP "H1'" H N N 568 UDP "H2'" H N N 569 UDP "HO2'" H N N 570 UDP "H3'" H N N 571 UDP "H4'" H N N 572 UDP "HO3'" H N N 573 UDP "H5'1" H N N 574 UDP "H5'2" H N N 575 UDP HOA2 H N N 576 UDP HOB2 H N N 577 UDP HOB3 H N N 578 VAL N N N N 579 VAL CA C N S 580 VAL C C N N 581 VAL O O N N 582 VAL CB C N N 583 VAL CG1 C N N 584 VAL CG2 C N N 585 VAL OXT O N N 586 VAL H H N N 587 VAL H2 H N N 588 VAL HA H N N 589 VAL HB H N N 590 VAL HG11 H N N 591 VAL HG12 H N N 592 VAL HG13 H N N 593 VAL HG21 H N N 594 VAL HG22 H N N 595 VAL HG23 H N N 596 VAL HXT H N N 597 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A9Z "O3'" "C3'" sing N N 1 A9Z "C3'" "C4'" sing N N 2 A9Z "C3'" "C2'" sing N N 3 A9Z "C4'" "C5'" sing N N 4 A9Z "C4'" "O4'" sing N N 5 A9Z "C5'" "O5'" sing N N 6 A9Z C6T C4T sing N N 7 A9Z C6T C7T sing N N 8 A9Z C4T C5T doub Y N 9 A9Z C4T N3T sing Y N 10 A9Z C5T N1T sing Y N 11 A9Z OP1 P doub N N 12 A9Z N3T N2T doub Y N 13 A9Z N1T "C2'" sing N N 14 A9Z N1T N2T sing Y N 15 A9Z "C2'" "C1'" sing N N 16 A9Z "O4'" "C1'" sing N N 17 A9Z "O5'" P sing N N 18 A9Z "C1'" N9 sing N N 19 A9Z P OP3 sing N N 20 A9Z P OP2 sing N N 21 A9Z N3 C4 doub Y N 22 A9Z N3 C2 sing Y N 23 A9Z N9 C4 sing Y N 24 A9Z N9 C8 sing Y N 25 A9Z C4 C5 sing Y N 26 A9Z C2 N1 doub Y N 27 A9Z C8 N7 doub Y N 28 A9Z C5 N7 sing Y N 29 A9Z C5 C6 doub Y N 30 A9Z N1 C6 sing Y N 31 A9Z C6 N6 sing N N 32 A9Z OP2 H1 sing N N 33 A9Z "C5'" H2 sing N N 34 A9Z "C5'" H3 sing N N 35 A9Z "C4'" H4 sing N N 36 A9Z "C3'" H5 sing N N 37 A9Z "O3'" H6 sing N N 38 A9Z "C2'" H7 sing N N 39 A9Z C5T H8 sing N N 40 A9Z C6T H9 sing N N 41 A9Z C6T H10 sing N N 42 A9Z C7T H11 sing N N 43 A9Z C7T H12 sing N N 44 A9Z C7T H13 sing N N 45 A9Z "C1'" H14 sing N N 46 A9Z C8 H15 sing N N 47 A9Z C2 H16 sing N N 48 A9Z N6 H17 sing N N 49 A9Z N6 H18 sing N N 50 A9Z OP3 H19 sing N N 51 ALA N CA sing N N 52 ALA N H sing N N 53 ALA N H2 sing N N 54 ALA CA C sing N N 55 ALA CA CB sing N N 56 ALA CA HA sing N N 57 ALA C O doub N N 58 ALA C OXT sing N N 59 ALA CB HB1 sing N N 60 ALA CB HB2 sing N N 61 ALA CB HB3 sing N N 62 ALA OXT HXT sing N N 63 ARG N CA sing N N 64 ARG N H sing N N 65 ARG N H2 sing N N 66 ARG CA C sing N N 67 ARG CA CB sing N N 68 ARG CA HA sing N N 69 ARG C O doub N N 70 ARG C OXT sing N N 71 ARG CB CG sing N N 72 ARG CB HB2 sing N N 73 ARG CB HB3 sing N N 74 ARG CG CD sing N N 75 ARG CG HG2 sing N N 76 ARG CG HG3 sing N N 77 ARG CD NE sing N N 78 ARG CD HD2 sing N N 79 ARG CD HD3 sing N N 80 ARG NE CZ sing N N 81 ARG NE HE sing N N 82 ARG CZ NH1 sing N N 83 ARG CZ NH2 doub N N 84 ARG NH1 HH11 sing N N 85 ARG NH1 HH12 sing N N 86 ARG NH2 HH21 sing N N 87 ARG NH2 HH22 sing N N 88 ARG OXT HXT sing N N 89 ASN N CA sing N N 90 ASN N H sing N N 91 ASN N H2 sing N N 92 ASN CA C sing N N 93 ASN CA CB sing N N 94 ASN CA HA sing N N 95 ASN C O doub N N 96 ASN C OXT sing N N 97 ASN CB CG sing N N 98 ASN CB HB2 sing N N 99 ASN CB HB3 sing N N 100 ASN CG OD1 doub N N 101 ASN CG ND2 sing N N 102 ASN ND2 HD21 sing N N 103 ASN ND2 HD22 sing N N 104 ASN OXT HXT sing N N 105 ASP N CA sing N N 106 ASP N H sing N N 107 ASP N H2 sing N N 108 ASP CA C sing N N 109 ASP CA CB sing N N 110 ASP CA HA sing N N 111 ASP C O doub N N 112 ASP C OXT sing N N 113 ASP CB CG sing N N 114 ASP CB HB2 sing N N 115 ASP CB HB3 sing N N 116 ASP CG OD1 doub N N 117 ASP CG OD2 sing N N 118 ASP OD2 HD2 sing N N 119 ASP OXT HXT sing N N 120 C OP3 P sing N N 121 C OP3 HOP3 sing N N 122 C P OP1 doub N N 123 C P OP2 sing N N 124 C P "O5'" sing N N 125 C OP2 HOP2 sing N N 126 C "O5'" "C5'" sing N N 127 C "C5'" "C4'" sing N N 128 C "C5'" "H5'" sing N N 129 C "C5'" "H5''" sing N N 130 C "C4'" "O4'" sing N N 131 C "C4'" "C3'" sing N N 132 C "C4'" "H4'" sing N N 133 C "O4'" "C1'" sing N N 134 C "C3'" "O3'" sing N N 135 C "C3'" "C2'" sing N N 136 C "C3'" "H3'" sing N N 137 C "O3'" "HO3'" sing N N 138 C "C2'" "O2'" sing N N 139 C "C2'" "C1'" sing N N 140 C "C2'" "H2'" sing N N 141 C "O2'" "HO2'" sing N N 142 C "C1'" N1 sing N N 143 C "C1'" "H1'" sing N N 144 C N1 C2 sing N N 145 C N1 C6 sing N N 146 C C2 O2 doub N N 147 C C2 N3 sing N N 148 C N3 C4 doub N N 149 C C4 N4 sing N N 150 C C4 C5 sing N N 151 C N4 H41 sing N N 152 C N4 H42 sing N N 153 C C5 C6 doub N N 154 C C5 H5 sing N N 155 C C6 H6 sing N N 156 CYS N CA sing N N 157 CYS N H sing N N 158 CYS N H2 sing N N 159 CYS CA C sing N N 160 CYS CA CB sing N N 161 CYS CA HA sing N N 162 CYS C O doub N N 163 CYS C OXT sing N N 164 CYS CB SG sing N N 165 CYS CB HB2 sing N N 166 CYS CB HB3 sing N N 167 CYS SG HG sing N N 168 CYS OXT HXT sing N N 169 DAL N CA sing N N 170 DAL N H sing N N 171 DAL N H2 sing N N 172 DAL CA CB sing N N 173 DAL CA C sing N N 174 DAL CA HA sing N N 175 DAL CB HB1 sing N N 176 DAL CB HB2 sing N N 177 DAL CB HB3 sing N N 178 DAL C O doub N N 179 DAL C OXT sing N N 180 DAL OXT HXT sing N N 181 FGA N CA sing N N 182 FGA N H sing N N 183 FGA N H2 sing N N 184 FGA CA C sing N N 185 FGA CA CB sing N N 186 FGA CA HA sing N N 187 FGA C O doub N N 188 FGA C OXT sing N N 189 FGA CB CG sing N N 190 FGA CB HB2 sing N N 191 FGA CB HB3 sing N N 192 FGA CG CD sing N N 193 FGA CG HG2 sing N N 194 FGA CG HG3 sing N N 195 FGA CD OE1 doub N N 196 FGA CD OE2 sing N N 197 FGA OE2 HE2 sing N N 198 FGA OXT HXT sing N N 199 GLN N CA sing N N 200 GLN N H sing N N 201 GLN N H2 sing N N 202 GLN CA C sing N N 203 GLN CA CB sing N N 204 GLN CA HA sing N N 205 GLN C O doub N N 206 GLN C OXT sing N N 207 GLN CB CG sing N N 208 GLN CB HB2 sing N N 209 GLN CB HB3 sing N N 210 GLN CG CD sing N N 211 GLN CG HG2 sing N N 212 GLN CG HG3 sing N N 213 GLN CD OE1 doub N N 214 GLN CD NE2 sing N N 215 GLN NE2 HE21 sing N N 216 GLN NE2 HE22 sing N N 217 GLN OXT HXT sing N N 218 GLU N CA sing N N 219 GLU N H sing N N 220 GLU N H2 sing N N 221 GLU CA C sing N N 222 GLU CA CB sing N N 223 GLU CA HA sing N N 224 GLU C O doub N N 225 GLU C OXT sing N N 226 GLU CB CG sing N N 227 GLU CB HB2 sing N N 228 GLU CB HB3 sing N N 229 GLU CG CD sing N N 230 GLU CG HG2 sing N N 231 GLU CG HG3 sing N N 232 GLU CD OE1 doub N N 233 GLU CD OE2 sing N N 234 GLU OE2 HE2 sing N N 235 GLU OXT HXT sing N N 236 GLY N CA sing N N 237 GLY N H sing N N 238 GLY N H2 sing N N 239 GLY CA C sing N N 240 GLY CA HA2 sing N N 241 GLY CA HA3 sing N N 242 GLY C O doub N N 243 GLY C OXT sing N N 244 GLY OXT HXT sing N N 245 GOL C1 O1 sing N N 246 GOL C1 C2 sing N N 247 GOL C1 H11 sing N N 248 GOL C1 H12 sing N N 249 GOL O1 HO1 sing N N 250 GOL C2 O2 sing N N 251 GOL C2 C3 sing N N 252 GOL C2 H2 sing N N 253 GOL O2 HO2 sing N N 254 GOL C3 O3 sing N N 255 GOL C3 H31 sing N N 256 GOL C3 H32 sing N N 257 GOL O3 HO3 sing N N 258 HIS N CA sing N N 259 HIS N H sing N N 260 HIS N H2 sing N N 261 HIS CA C sing N N 262 HIS CA CB sing N N 263 HIS CA HA sing N N 264 HIS C O doub N N 265 HIS C OXT sing N N 266 HIS CB CG sing N N 267 HIS CB HB2 sing N N 268 HIS CB HB3 sing N N 269 HIS CG ND1 sing Y N 270 HIS CG CD2 doub Y N 271 HIS ND1 CE1 doub Y N 272 HIS ND1 HD1 sing N N 273 HIS CD2 NE2 sing Y N 274 HIS CD2 HD2 sing N N 275 HIS CE1 NE2 sing Y N 276 HIS CE1 HE1 sing N N 277 HIS NE2 HE2 sing N N 278 HIS OXT HXT sing N N 279 HOH O H1 sing N N 280 HOH O H2 sing N N 281 ILE N CA sing N N 282 ILE N H sing N N 283 ILE N H2 sing N N 284 ILE CA C sing N N 285 ILE CA CB sing N N 286 ILE CA HA sing N N 287 ILE C O doub N N 288 ILE C OXT sing N N 289 ILE CB CG1 sing N N 290 ILE CB CG2 sing N N 291 ILE CB HB sing N N 292 ILE CG1 CD1 sing N N 293 ILE CG1 HG12 sing N N 294 ILE CG1 HG13 sing N N 295 ILE CG2 HG21 sing N N 296 ILE CG2 HG22 sing N N 297 ILE CG2 HG23 sing N N 298 ILE CD1 HD11 sing N N 299 ILE CD1 HD12 sing N N 300 ILE CD1 HD13 sing N N 301 ILE OXT HXT sing N N 302 LEU N CA sing N N 303 LEU N H sing N N 304 LEU N H2 sing N N 305 LEU CA C sing N N 306 LEU CA CB sing N N 307 LEU CA HA sing N N 308 LEU C O doub N N 309 LEU C OXT sing N N 310 LEU CB CG sing N N 311 LEU CB HB2 sing N N 312 LEU CB HB3 sing N N 313 LEU CG CD1 sing N N 314 LEU CG CD2 sing N N 315 LEU CG HG sing N N 316 LEU CD1 HD11 sing N N 317 LEU CD1 HD12 sing N N 318 LEU CD1 HD13 sing N N 319 LEU CD2 HD21 sing N N 320 LEU CD2 HD22 sing N N 321 LEU CD2 HD23 sing N N 322 LEU OXT HXT sing N N 323 LYS N CA sing N N 324 LYS N H sing N N 325 LYS N H2 sing N N 326 LYS CA C sing N N 327 LYS CA CB sing N N 328 LYS CA HA sing N N 329 LYS C O doub N N 330 LYS C OXT sing N N 331 LYS CB CG sing N N 332 LYS CB HB2 sing N N 333 LYS CB HB3 sing N N 334 LYS CG CD sing N N 335 LYS CG HG2 sing N N 336 LYS CG HG3 sing N N 337 LYS CD CE sing N N 338 LYS CD HD2 sing N N 339 LYS CD HD3 sing N N 340 LYS CE NZ sing N N 341 LYS CE HE2 sing N N 342 LYS CE HE3 sing N N 343 LYS NZ HZ1 sing N N 344 LYS NZ HZ2 sing N N 345 LYS NZ HZ3 sing N N 346 LYS OXT HXT sing N N 347 MET N CA sing N N 348 MET N H sing N N 349 MET N H2 sing N N 350 MET CA C sing N N 351 MET CA CB sing N N 352 MET CA HA sing N N 353 MET C O doub N N 354 MET C OXT sing N N 355 MET CB CG sing N N 356 MET CB HB2 sing N N 357 MET CB HB3 sing N N 358 MET CG SD sing N N 359 MET CG HG2 sing N N 360 MET CG HG3 sing N N 361 MET SD CE sing N N 362 MET CE HE1 sing N N 363 MET CE HE2 sing N N 364 MET CE HE3 sing N N 365 MET OXT HXT sing N N 366 MUB C1 C2 sing N N 367 MUB C2 C3 sing N N 368 MUB C3 C4 sing N N 369 MUB C4 C5 sing N N 370 MUB C5 C6 sing N N 371 MUB C7 C8 sing N N 372 MUB C9 C10 sing N N 373 MUB C9 C11 sing N N 374 MUB C1 O1 sing N N 375 MUB C3 O3 sing N N 376 MUB C9 O3 sing N N 377 MUB C4 O4 sing N N 378 MUB C1 O5 sing N N 379 MUB C5 O5 sing N N 380 MUB C6 O6 sing N N 381 MUB C7 O7 doub N N 382 MUB C10 O11 sing N N 383 MUB C10 O10 doub N N 384 MUB C2 N2 sing N N 385 MUB C7 N2 sing N N 386 MUB C1 H1 sing N N 387 MUB C2 H2 sing N N 388 MUB N2 HN2 sing N N 389 MUB C8 H81 sing N N 390 MUB C8 H82 sing N N 391 MUB C8 H83 sing N N 392 MUB C3 H3 sing N N 393 MUB C9 H9 sing N N 394 MUB C11 H111 sing N N 395 MUB C11 H112 sing N N 396 MUB C11 H113 sing N N 397 MUB C4 H4 sing N N 398 MUB C5 H5 sing N N 399 MUB C6 H61 sing N N 400 MUB C6 H62 sing N N 401 MUB O6 HO6 sing N N 402 MUB O4 HO4 sing N N 403 MUB O11 HO11 sing N N 404 MUB O1 HO1 sing N N 405 PHE N CA sing N N 406 PHE N H sing N N 407 PHE N H2 sing N N 408 PHE CA C sing N N 409 PHE CA CB sing N N 410 PHE CA HA sing N N 411 PHE C O doub N N 412 PHE C OXT sing N N 413 PHE CB CG sing N N 414 PHE CB HB2 sing N N 415 PHE CB HB3 sing N N 416 PHE CG CD1 doub Y N 417 PHE CG CD2 sing Y N 418 PHE CD1 CE1 sing Y N 419 PHE CD1 HD1 sing N N 420 PHE CD2 CE2 doub Y N 421 PHE CD2 HD2 sing N N 422 PHE CE1 CZ doub Y N 423 PHE CE1 HE1 sing N N 424 PHE CE2 CZ sing Y N 425 PHE CE2 HE2 sing N N 426 PHE CZ HZ sing N N 427 PHE OXT HXT sing N N 428 PRO N CA sing N N 429 PRO N CD sing N N 430 PRO N H sing N N 431 PRO CA C sing N N 432 PRO CA CB sing N N 433 PRO CA HA sing N N 434 PRO C O doub N N 435 PRO C OXT sing N N 436 PRO CB CG sing N N 437 PRO CB HB2 sing N N 438 PRO CB HB3 sing N N 439 PRO CG CD sing N N 440 PRO CG HG2 sing N N 441 PRO CG HG3 sing N N 442 PRO CD HD2 sing N N 443 PRO CD HD3 sing N N 444 PRO OXT HXT sing N N 445 SER N CA sing N N 446 SER N H sing N N 447 SER N H2 sing N N 448 SER CA C sing N N 449 SER CA CB sing N N 450 SER CA HA sing N N 451 SER C O doub N N 452 SER C OXT sing N N 453 SER CB OG sing N N 454 SER CB HB2 sing N N 455 SER CB HB3 sing N N 456 SER OG HG sing N N 457 SER OXT HXT sing N N 458 THR N CA sing N N 459 THR N H sing N N 460 THR N H2 sing N N 461 THR CA C sing N N 462 THR CA CB sing N N 463 THR CA HA sing N N 464 THR C O doub N N 465 THR C OXT sing N N 466 THR CB OG1 sing N N 467 THR CB CG2 sing N N 468 THR CB HB sing N N 469 THR OG1 HG1 sing N N 470 THR CG2 HG21 sing N N 471 THR CG2 HG22 sing N N 472 THR CG2 HG23 sing N N 473 THR OXT HXT sing N N 474 TRP N CA sing N N 475 TRP N H sing N N 476 TRP N H2 sing N N 477 TRP CA C sing N N 478 TRP CA CB sing N N 479 TRP CA HA sing N N 480 TRP C O doub N N 481 TRP C OXT sing N N 482 TRP CB CG sing N N 483 TRP CB HB2 sing N N 484 TRP CB HB3 sing N N 485 TRP CG CD1 doub Y N 486 TRP CG CD2 sing Y N 487 TRP CD1 NE1 sing Y N 488 TRP CD1 HD1 sing N N 489 TRP CD2 CE2 doub Y N 490 TRP CD2 CE3 sing Y N 491 TRP NE1 CE2 sing Y N 492 TRP NE1 HE1 sing N N 493 TRP CE2 CZ2 sing Y N 494 TRP CE3 CZ3 doub Y N 495 TRP CE3 HE3 sing N N 496 TRP CZ2 CH2 doub Y N 497 TRP CZ2 HZ2 sing N N 498 TRP CZ3 CH2 sing Y N 499 TRP CZ3 HZ3 sing N N 500 TRP CH2 HH2 sing N N 501 TRP OXT HXT sing N N 502 TYR N CA sing N N 503 TYR N H sing N N 504 TYR N H2 sing N N 505 TYR CA C sing N N 506 TYR CA CB sing N N 507 TYR CA HA sing N N 508 TYR C O doub N N 509 TYR C OXT sing N N 510 TYR CB CG sing N N 511 TYR CB HB2 sing N N 512 TYR CB HB3 sing N N 513 TYR CG CD1 doub Y N 514 TYR CG CD2 sing Y N 515 TYR CD1 CE1 sing Y N 516 TYR CD1 HD1 sing N N 517 TYR CD2 CE2 doub Y N 518 TYR CD2 HD2 sing N N 519 TYR CE1 CZ doub Y N 520 TYR CE1 HE1 sing N N 521 TYR CE2 CZ sing Y N 522 TYR CE2 HE2 sing N N 523 TYR CZ OH sing N N 524 TYR OH HH sing N N 525 TYR OXT HXT sing N N 526 UDP N1 C2 sing N N 527 UDP N1 C6 sing N N 528 UDP N1 "C1'" sing N N 529 UDP C2 N3 sing N N 530 UDP C2 O2 doub N N 531 UDP N3 C4 sing N N 532 UDP N3 HN3 sing N N 533 UDP C4 C5 sing N N 534 UDP C4 O4 doub N N 535 UDP C5 C6 doub N N 536 UDP C5 H5 sing N N 537 UDP C6 H6 sing N N 538 UDP "C1'" "C2'" sing N N 539 UDP "C1'" "O4'" sing N N 540 UDP "C1'" "H1'" sing N N 541 UDP "C2'" "O2'" sing N N 542 UDP "C2'" "C3'" sing N N 543 UDP "C2'" "H2'" sing N N 544 UDP "O2'" "HO2'" sing N N 545 UDP "C3'" "C4'" sing N N 546 UDP "C3'" "O3'" sing N N 547 UDP "C3'" "H3'" sing N N 548 UDP "C4'" "O4'" sing N N 549 UDP "C4'" "C5'" sing N N 550 UDP "C4'" "H4'" sing N N 551 UDP "O3'" "HO3'" sing N N 552 UDP "C5'" "O5'" sing N N 553 UDP "C5'" "H5'1" sing N N 554 UDP "C5'" "H5'2" sing N N 555 UDP "O5'" PA sing N N 556 UDP PA O1A doub N N 557 UDP PA O2A sing N N 558 UDP PA O3A sing N N 559 UDP O2A HOA2 sing N N 560 UDP O3A PB sing N N 561 UDP PB O1B doub N N 562 UDP PB O2B sing N N 563 UDP PB O3B sing N N 564 UDP O2B HOB2 sing N N 565 UDP O3B HOB3 sing N N 566 VAL N CA sing N N 567 VAL N H sing N N 568 VAL N H2 sing N N 569 VAL CA C sing N N 570 VAL CA CB sing N N 571 VAL CA HA sing N N 572 VAL C O doub N N 573 VAL C OXT sing N N 574 VAL CB CG1 sing N N 575 VAL CB CG2 sing N N 576 VAL CB HB sing N N 577 VAL CG1 HG11 sing N N 578 VAL CG1 HG12 sing N N 579 VAL CG1 HG13 sing N N 580 VAL CG2 HG21 sing N N 581 VAL CG2 HG22 sing N N 582 VAL CG2 HG23 sing N N 583 VAL OXT HXT sing N N 584 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MUB 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpNAc3 MUB 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 MurNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 "URIDINE-5'-DIPHOSPHATE" UDP 6 'N-acetyl-alpha-muramic acid' MUB 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GKR _pdbx_initial_refinement_model.details ? #