HEADER OXIDOREDUCTASE 21-DEC-12 4IJC TITLE CRYSTAL STRUCTURE OF ARABINOSE DEHYDROGENASE ARA1 FROM SACCHAROMYCES TITLE 2 CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ARABINOSE DEHYDROGENASE [NAD(P)+] HEAVY CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AKR3C, NADP+ DEPENDENT ARABINOSE DEHYDROGENASE; COMPND 5 EC: 1.1.1.117; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: ARA1, YBR1127, YBR149W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BETA BARREL, TIM BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.Q.HU,P.C.GUO,W.F.LI,C.Z.ZHOU REVDAT 2 08-NOV-23 4IJC 1 REMARK REVDAT 1 27-NOV-13 4IJC 0 JRNL AUTH X.Q.HU,P.C.GUO,J.D.MA,W.F.LI JRNL TITL STRUCTURES OF SACCHAROMYCES CEREVISIAED-ARABINOSE JRNL TITL 2 DEHYDROGENASE ARA1 AND ITS COMPLEX WITH NADPH: IMPLICATIONS JRNL TITL 3 FOR COFACTOR-ASSISTED SUBSTRATE RECOGNITION JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 1190 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 24192347 JRNL DOI 10.1107/S1744309113026857 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 39323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2084 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2777 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5288 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : -2.44000 REMARK 3 B33 (A**2) : 1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.278 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.810 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5437 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7383 ; 0.985 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 658 ; 4.990 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;35.491 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 958 ;12.396 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;12.423 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 822 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4074 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3304 ; 0.284 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5370 ; 0.551 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2133 ; 0.898 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2013 ; 1.518 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 344 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9660 17.8920 15.0150 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.1371 REMARK 3 T33: 0.0194 T12: -0.0508 REMARK 3 T13: 0.0124 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.7286 L22: 2.0471 REMARK 3 L33: 0.7473 L12: 0.4029 REMARK 3 L13: -0.1767 L23: -0.4134 REMARK 3 S TENSOR REMARK 3 S11: 0.1537 S12: -0.0815 S13: 0.0754 REMARK 3 S21: 0.2099 S22: -0.1208 S23: -0.0751 REMARK 3 S31: -0.0954 S32: 0.0303 S33: -0.0329 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 344 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2300 -18.1110 14.3970 REMARK 3 T TENSOR REMARK 3 T11: 0.0800 T22: 0.1226 REMARK 3 T33: 0.0459 T12: -0.0514 REMARK 3 T13: -0.0361 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 0.7626 L22: 1.4782 REMARK 3 L33: 0.9868 L12: 0.3080 REMARK 3 L13: 0.1714 L23: 0.2271 REMARK 3 S TENSOR REMARK 3 S11: 0.1480 S12: -0.0955 S13: -0.1233 REMARK 3 S21: 0.0680 S22: -0.0792 S23: 0.0530 REMARK 3 S31: 0.0924 S32: -0.0669 S33: -0.0688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4IJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 19.5570 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.25700 REMARK 200 R SYM FOR SHELL (I) : 0.25700 REMARK 200 FOR SHELL : 10.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZUA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% POLYETHYLENE GLYCOL 3350, 0.1M REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.44900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.82150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.78400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.82150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.44900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.78400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 GLU A 9 REMARK 465 ASN A 10 REMARK 465 ILE A 11 REMARK 465 VAL A 12 REMARK 465 GLU A 13 REMARK 465 ASN A 14 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 THR B 8 REMARK 465 GLU B 9 REMARK 465 ASN B 10 REMARK 465 ILE B 11 REMARK 465 VAL B 12 REMARK 465 GLU B 13 REMARK 465 ASN B 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 141 95.19 -161.26 REMARK 500 HIS A 218 -179.69 -179.82 REMARK 500 SER A 245 -150.83 62.52 REMARK 500 ALA A 248 61.11 38.29 REMARK 500 ASP A 322 74.81 -158.52 REMARK 500 ASP B 141 110.36 -160.57 REMARK 500 HIS B 218 173.25 172.40 REMARK 500 LEU B 221 75.97 -150.52 REMARK 500 SER B 245 -134.52 62.04 REMARK 500 ASP B 322 69.82 -156.33 REMARK 500 LYS B 343 52.63 -94.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IJR RELATED DB: PDB DBREF 4IJC A 1 344 UNP P38115 ARA1_YEAST 1 344 DBREF 4IJC B 1 344 UNP P38115 ARA1_YEAST 1 344 SEQRES 1 A 344 MET SER SER SER VAL ALA SER THR GLU ASN ILE VAL GLU SEQRES 2 A 344 ASN MET LEU HIS PRO LYS THR THR GLU ILE TYR PHE SER SEQRES 3 A 344 LEU ASN ASN GLY VAL ARG ILE PRO ALA LEU GLY LEU GLY SEQRES 4 A 344 THR ALA ASN PRO HIS GLU LYS LEU ALA GLU THR LYS GLN SEQRES 5 A 344 ALA VAL LYS ALA ALA ILE LYS ALA GLY TYR ARG HIS ILE SEQRES 6 A 344 ASP THR ALA TRP ALA TYR GLU THR GLU PRO PHE VAL GLY SEQRES 7 A 344 GLU ALA ILE LYS GLU LEU LEU GLU ASP GLY SER ILE LYS SEQRES 8 A 344 ARG GLU ASP LEU PHE ILE THR THR LYS VAL TRP PRO VAL SEQRES 9 A 344 LEU TRP ASP GLU VAL ASP ARG SER LEU ASN GLU SER LEU SEQRES 10 A 344 LYS ALA LEU GLY LEU GLU TYR VAL ASP LEU LEU LEU GLN SEQRES 11 A 344 HIS TRP PRO LEU CYS PHE GLU LYS ILE LYS ASP PRO LYS SEQRES 12 A 344 GLY ILE SER GLY LEU VAL LYS THR PRO VAL ASP ASP SER SEQRES 13 A 344 GLY LYS THR MET TYR ALA ALA ASP GLY ASP TYR LEU GLU SEQRES 14 A 344 THR TYR LYS GLN LEU GLU LYS ILE TYR LEU ASP PRO ASN SEQRES 15 A 344 ASP HIS ARG VAL ARG ALA ILE GLY VAL SER ASN PHE SER SEQRES 16 A 344 ILE GLU TYR LEU GLU ARG LEU ILE LYS GLU CYS ARG VAL SEQRES 17 A 344 LYS PRO THR VAL ASN GLN VAL GLU THR HIS PRO HIS LEU SEQRES 18 A 344 PRO GLN MET GLU LEU ARG LYS PHE CYS PHE MET HIS ASP SEQRES 19 A 344 ILE LEU LEU THR ALA TYR SER PRO LEU GLY SER HIS GLY SEQRES 20 A 344 ALA PRO ASN LEU LYS ILE PRO LEU VAL LYS LYS LEU ALA SEQRES 21 A 344 GLU LYS TYR ASN VAL THR GLY ASN ASP LEU LEU ILE SER SEQRES 22 A 344 TYR HIS ILE ARG GLN GLY THR ILE VAL ILE PRO ARG SER SEQRES 23 A 344 LEU ASN PRO VAL ARG ILE SER SER SER ILE GLU PHE ALA SEQRES 24 A 344 SER LEU THR LYS ASP GLU LEU GLN GLU LEU ASN ASP PHE SEQRES 25 A 344 GLY GLU LYS TYR PRO VAL ARG PHE ILE ASP GLU PRO PHE SEQRES 26 A 344 ALA ALA ILE LEU PRO GLU PHE THR GLY ASN GLY PRO ASN SEQRES 27 A 344 LEU ASP ASN LEU LYS TYR SEQRES 1 B 344 MET SER SER SER VAL ALA SER THR GLU ASN ILE VAL GLU SEQRES 2 B 344 ASN MET LEU HIS PRO LYS THR THR GLU ILE TYR PHE SER SEQRES 3 B 344 LEU ASN ASN GLY VAL ARG ILE PRO ALA LEU GLY LEU GLY SEQRES 4 B 344 THR ALA ASN PRO HIS GLU LYS LEU ALA GLU THR LYS GLN SEQRES 5 B 344 ALA VAL LYS ALA ALA ILE LYS ALA GLY TYR ARG HIS ILE SEQRES 6 B 344 ASP THR ALA TRP ALA TYR GLU THR GLU PRO PHE VAL GLY SEQRES 7 B 344 GLU ALA ILE LYS GLU LEU LEU GLU ASP GLY SER ILE LYS SEQRES 8 B 344 ARG GLU ASP LEU PHE ILE THR THR LYS VAL TRP PRO VAL SEQRES 9 B 344 LEU TRP ASP GLU VAL ASP ARG SER LEU ASN GLU SER LEU SEQRES 10 B 344 LYS ALA LEU GLY LEU GLU TYR VAL ASP LEU LEU LEU GLN SEQRES 11 B 344 HIS TRP PRO LEU CYS PHE GLU LYS ILE LYS ASP PRO LYS SEQRES 12 B 344 GLY ILE SER GLY LEU VAL LYS THR PRO VAL ASP ASP SER SEQRES 13 B 344 GLY LYS THR MET TYR ALA ALA ASP GLY ASP TYR LEU GLU SEQRES 14 B 344 THR TYR LYS GLN LEU GLU LYS ILE TYR LEU ASP PRO ASN SEQRES 15 B 344 ASP HIS ARG VAL ARG ALA ILE GLY VAL SER ASN PHE SER SEQRES 16 B 344 ILE GLU TYR LEU GLU ARG LEU ILE LYS GLU CYS ARG VAL SEQRES 17 B 344 LYS PRO THR VAL ASN GLN VAL GLU THR HIS PRO HIS LEU SEQRES 18 B 344 PRO GLN MET GLU LEU ARG LYS PHE CYS PHE MET HIS ASP SEQRES 19 B 344 ILE LEU LEU THR ALA TYR SER PRO LEU GLY SER HIS GLY SEQRES 20 B 344 ALA PRO ASN LEU LYS ILE PRO LEU VAL LYS LYS LEU ALA SEQRES 21 B 344 GLU LYS TYR ASN VAL THR GLY ASN ASP LEU LEU ILE SER SEQRES 22 B 344 TYR HIS ILE ARG GLN GLY THR ILE VAL ILE PRO ARG SER SEQRES 23 B 344 LEU ASN PRO VAL ARG ILE SER SER SER ILE GLU PHE ALA SEQRES 24 B 344 SER LEU THR LYS ASP GLU LEU GLN GLU LEU ASN ASP PHE SEQRES 25 B 344 GLY GLU LYS TYR PRO VAL ARG PHE ILE ASP GLU PRO PHE SEQRES 26 B 344 ALA ALA ILE LEU PRO GLU PHE THR GLY ASN GLY PRO ASN SEQRES 27 B 344 LEU ASP ASN LEU LYS TYR HET SO4 A 401 5 HET SO4 A 402 5 HET GOL A 403 6 HET SO4 B 401 5 HET SO4 B 402 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 8 HOH *338(H2 O) HELIX 1 1 LYS A 19 GLU A 22 5 4 HELIX 2 2 PRO A 43 ALA A 48 5 6 HELIX 3 3 GLU A 49 GLY A 61 1 13 HELIX 4 4 ALA A 68 GLU A 72 5 5 HELIX 5 5 THR A 73 ASP A 87 1 15 HELIX 6 6 LYS A 91 LEU A 95 5 5 HELIX 7 7 TRP A 102 TRP A 106 5 5 HELIX 8 8 GLU A 108 GLY A 121 1 14 HELIX 9 9 GLY A 144 LEU A 148 5 5 HELIX 10 10 TYR A 167 ASP A 180 1 14 HELIX 11 11 SER A 195 CYS A 206 1 12 HELIX 12 12 GLN A 223 HIS A 233 1 11 HELIX 13 13 ALA A 248 LYS A 252 5 5 HELIX 14 14 ILE A 253 TYR A 263 1 11 HELIX 15 15 THR A 266 GLN A 278 1 13 HELIX 16 16 ASN A 288 SER A 295 1 8 HELIX 17 17 THR A 302 TYR A 316 1 15 HELIX 18 18 GLU A 323 ALA A 327 5 5 HELIX 19 19 ASN A 338 LYS A 343 5 6 HELIX 20 20 LYS B 19 GLU B 22 5 4 HELIX 21 21 PRO B 43 ALA B 48 5 6 HELIX 22 22 GLU B 49 GLY B 61 1 13 HELIX 23 23 ALA B 68 GLU B 72 5 5 HELIX 24 24 THR B 73 ASP B 87 1 15 HELIX 25 25 LYS B 91 LEU B 95 5 5 HELIX 26 26 TRP B 102 TRP B 106 5 5 HELIX 27 27 GLU B 108 GLY B 121 1 14 HELIX 28 28 TYR B 167 ASP B 180 1 14 HELIX 29 29 SER B 195 CYS B 206 1 12 HELIX 30 30 GLN B 223 HIS B 233 1 11 HELIX 31 31 ALA B 248 LYS B 252 5 5 HELIX 32 32 ILE B 253 TYR B 263 1 11 HELIX 33 33 THR B 266 GLN B 278 1 13 HELIX 34 34 ASN B 288 SER B 295 1 8 HELIX 35 35 THR B 302 TYR B 316 1 15 HELIX 36 36 GLU B 323 ALA B 327 5 5 HELIX 37 37 ASN B 338 LYS B 343 5 6 SHEET 1 A 2 TYR A 24 SER A 26 0 SHEET 2 A 2 ARG A 32 PRO A 34 -1 O ILE A 33 N PHE A 25 SHEET 1 B 8 LEU A 38 GLY A 39 0 SHEET 2 B 8 HIS A 64 ASP A 66 1 O ASP A 66 N LEU A 38 SHEET 3 B 8 PHE A 96 VAL A 101 1 O PHE A 96 N ILE A 65 SHEET 4 B 8 LEU A 127 GLN A 130 1 O LEU A 129 N VAL A 101 SHEET 5 B 8 ILE A 189 SER A 192 1 O GLY A 190 N GLN A 130 SHEET 6 B 8 VAL A 212 GLU A 216 1 O GLN A 214 N VAL A 191 SHEET 7 B 8 LEU A 236 TYR A 240 1 O THR A 238 N VAL A 215 SHEET 8 B 8 ILE A 281 VAL A 282 1 O ILE A 281 N ALA A 239 SHEET 1 C 2 TYR B 24 SER B 26 0 SHEET 2 C 2 ARG B 32 PRO B 34 -1 O ILE B 33 N PHE B 25 SHEET 1 D 8 LEU B 38 GLY B 39 0 SHEET 2 D 8 HIS B 64 ASP B 66 1 O ASP B 66 N LEU B 38 SHEET 3 D 8 PHE B 96 VAL B 101 1 O THR B 98 N ILE B 65 SHEET 4 D 8 LEU B 127 GLN B 130 1 O LEU B 129 N VAL B 101 SHEET 5 D 8 ILE B 189 SER B 192 1 O GLY B 190 N GLN B 130 SHEET 6 D 8 VAL B 212 GLU B 216 1 O VAL B 212 N VAL B 191 SHEET 7 D 8 LEU B 236 TYR B 240 1 O THR B 238 N VAL B 215 SHEET 8 D 8 ILE B 281 VAL B 282 1 O ILE B 281 N ALA B 239 CISPEP 1 HIS A 17 PRO A 18 0 -2.96 CISPEP 2 HIS B 17 PRO B 18 0 -2.36 CISPEP 3 SER B 156 GLY B 157 0 2.12 SITE 1 AC1 6 SER A 241 SER A 245 ARG A 285 SO4 A 402 SITE 2 AC1 6 HOH A 530 HOH A 628 SITE 1 AC2 7 SER A 241 PRO A 242 LEU A 243 GLY A 244 SITE 2 AC2 7 ARG A 285 SO4 A 401 HOH A 629 SITE 1 AC3 6 VAL A 31 ARG A 187 HOH A 637 HOH A 665 SITE 2 AC3 6 LYS B 91 HOH B 628 SITE 1 AC4 10 SER B 241 PRO B 242 LEU B 243 GLY B 244 SITE 2 AC4 10 SER B 245 ARG B 285 SO4 B 402 HOH B 552 SITE 3 AC4 10 HOH B 592 HOH B 634 SITE 1 AC5 4 SER B 241 SER B 245 ARG B 285 SO4 B 401 CRYST1 70.898 91.568 107.643 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009290 0.00000