HEADER REPLICATION 25-DEC-12 4IKA TITLE CRYSTAL STRUCTURE OF EV71 3DPOL-VPG COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3DPOL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1732-2193; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VPG; COMPND 8 CHAIN: D; COMPND 9 FRAGMENT: UNP RESIDUES 1527-1548; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS 71; SOURCE 3 ORGANISM_TAXID: 39054; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS 71; SOURCE 8 ORGANISM_TAXID: 39054; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RDRP, REPLICATION, VPG EXPDTA X-RAY DIFFRACTION AUTHOR C.CHEN,Y.X.WANG,Z.Y.LOU REVDAT 2 08-NOV-23 4IKA 1 REMARK LINK REVDAT 1 04-SEP-13 4IKA 0 JRNL AUTH C.CHEN,Y.X.WANG,C.SHAN,Y.SUN,P.XU,H.G.ZHOU,C.YANG,P.Y.SHI, JRNL AUTH 2 Z.H.RAO,B.ZHANG,Z.Y.LOU JRNL TITL CRYSTAL STRUCTURE OF ENTEROVIRUS 71 RNA-DEPENDENT RNA JRNL TITL 2 POLYMERASE COMPLEXED WITH ITS PROTEIN PRIMER VPG: JRNL TITL 3 IMPLICATION FOR A TRANS MECHANISM OF VPG URIDYLYLATION JRNL REF J.VIROL. V. 87 5755 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23487447 JRNL DOI 10.1128/JVI.02733-12 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 22910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2344 - 5.3980 1.00 2897 140 0.1902 0.2517 REMARK 3 2 5.3980 - 4.2854 1.00 2745 144 0.1628 0.1925 REMARK 3 3 4.2854 - 3.7439 1.00 2730 150 0.1809 0.2305 REMARK 3 4 3.7439 - 3.4017 1.00 2722 149 0.2357 0.3216 REMARK 3 5 3.4017 - 3.1579 1.00 2707 126 0.2709 0.3905 REMARK 3 6 3.1579 - 2.9718 1.00 2703 129 0.2795 0.3696 REMARK 3 7 2.9718 - 2.8230 1.00 2682 159 0.3033 0.3864 REMARK 3 8 2.8230 - 2.7001 0.96 2582 145 0.4086 0.4130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 56.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.920 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70660 REMARK 3 B22 (A**2) : 0.70660 REMARK 3 B33 (A**2) : -1.41320 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3938 REMARK 3 ANGLE : 1.217 5337 REMARK 3 CHIRALITY : 0.079 579 REMARK 3 PLANARITY : 0.006 686 REMARK 3 DIHEDRAL : 16.439 1459 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3N6L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3M AMMONIUM SULFATE, 0.1M BIS-TRIS REMARK 280 (PH 6.1), 1MM DTT, 10MM NICL2 , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.11333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.05667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.05667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.11333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 635 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL D 21 REMARK 465 GLN D 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 261 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 290 O HOH A 700 1.43 REMARK 500 O HOH A 602 O HOH A 812 1.61 REMARK 500 O GLU A 366 O HOH A 801 1.87 REMARK 500 O HOH A 717 O HOH A 900 1.96 REMARK 500 OE1 GLU A 397 O HOH A 644 2.01 REMARK 500 OD2 ASP A 137 O HOH A 693 2.07 REMARK 500 O CYS A 291 OG1 THR A 294 2.07 REMARK 500 O HOH A 665 O HOH A 675 2.07 REMARK 500 O HOH A 603 O HOH A 699 2.10 REMARK 500 O HOH A 732 O HOH A 853 2.16 REMARK 500 OG SER A 60 O HOH A 687 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N ASP A 32 O HOH A 621 3565 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 362 CD PRO A 362 N 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 18 CB - CA - C ANGL. DEV. = -34.4 DEGREES REMARK 500 PRO A 20 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 ASN A 106 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 SER A 289 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 PRO A 362 C - N - CD ANGL. DEV. = -15.4 DEGREES REMARK 500 SER D 4 N - CA - CB ANGL. DEV. = -14.3 DEGREES REMARK 500 SER D 4 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 ALA D 19 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 THR D 20 N - CA - CB ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 21 19.75 85.43 REMARK 500 PHE A 54 -71.50 -57.09 REMARK 500 ASP A 71 -163.59 -78.54 REMARK 500 ASN A 106 13.28 86.99 REMARK 500 LEU A 107 106.09 -160.48 REMARK 500 LEU A 225 69.27 -119.68 REMARK 500 ALA A 231 147.65 -177.14 REMARK 500 ARG A 277 -126.81 49.76 REMARK 500 ASN A 278 53.95 -113.91 REMARK 500 LYS A 360 19.30 46.08 REMARK 500 LYS A 376 -6.92 80.81 REMARK 500 PRO A 386 -19.71 -46.97 REMARK 500 ALA D 2 -49.90 172.23 REMARK 500 TYR D 3 -178.52 -62.73 REMARK 500 ALA D 6 -69.10 -163.93 REMARK 500 LYS D 8 27.10 -148.14 REMARK 500 ALA D 19 -120.76 58.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 502 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 31 NE2 REMARK 620 2 HOH A 730 O 157.5 REMARK 620 3 HOH A 742 O 94.7 95.4 REMARK 620 4 HOH A 827 O 127.7 74.7 61.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 502 DBREF 4IKA A 1 462 UNP I3UIB4 I3UIB4_9ENTO 1732 2193 DBREF 4IKA D 1 22 UNP Q0ZSY4 Q0ZSY4_9ENTO 1527 1548 SEQRES 1 A 462 GLY GLU ILE GLN TRP VAL LYS PRO ASN LYS GLU THR GLY SEQRES 2 A 462 ARG LEU SER ILE ASN GLY PRO THR ARG THR LYS LEU GLU SEQRES 3 A 462 PRO SER VAL PHE HIS ASP VAL PHE GLU GLY ASN LYS GLU SEQRES 4 A 462 PRO ALA VAL LEU HIS SER LYS ASP PRO ARG LEU GLU VAL SEQRES 5 A 462 ASP PHE GLU GLN ALA LEU PHE SER LYS TYR VAL GLY ASN SEQRES 6 A 462 THR LEU TYR GLU PRO ASP GLU TYR ILE LYS GLU ALA ALA SEQRES 7 A 462 LEU HIS TYR ALA ASN GLN LEU LYS GLN LEU GLU ILE ASN SEQRES 8 A 462 THR SER GLN MET SER MET GLU GLU ALA CYS TYR GLY THR SEQRES 9 A 462 GLU ASN LEU GLU ALA ILE ASP LEU HIS THR SER ALA GLY SEQRES 10 A 462 TYR PRO TYR SER ALA LEU GLY ILE LYS LYS ARG ASP ILE SEQRES 11 A 462 LEU ASP PRO THR THR ARG ASP VAL SER LYS MET LYS PHE SEQRES 12 A 462 TYR MET ASP LYS TYR GLY LEU ASP LEU PRO TYR SER THR SEQRES 13 A 462 TYR VAL LYS ASP GLU LEU ARG SER ILE ASP LYS ILE LYS SEQRES 14 A 462 LYS GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 462 ASP SER VAL TYR LEU ARG MET ALA PHE GLY HIS LEU TYR SEQRES 16 A 462 GLU THR PHE HIS ALA ASN PRO GLY THR ILE THR GLY SER SEQRES 17 A 462 ALA VAL GLY CYS ASN PRO ASP THR PHE TRP SER LYS LEU SEQRES 18 A 462 PRO ILE LEU LEU PRO GLY SER LEU PHE ALA PHE ASP TYR SEQRES 19 A 462 SER GLY TYR ASP ALA SER LEU SER PRO VAL TRP PHE ARG SEQRES 20 A 462 ALA LEU GLU LEU VAL LEU ARG GLU ILE GLY TYR SER GLU SEQRES 21 A 462 GLU ALA ILE SER LEU ILE GLU GLY ILE ASN HIS THR HIS SEQRES 22 A 462 HIS VAL TYR ARG ASN LYS THR TYR CYS VAL LEU GLY GLY SEQRES 23 A 462 MET PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER SEQRES 24 A 462 MET ILE ASN ASN ILE ILE ILE ARG ALA LEU LEU ILE LYS SEQRES 25 A 462 THR PHE LYS GLY ILE ASP LEU ASP GLU LEU ASN MET VAL SEQRES 26 A 462 ALA TYR GLY ASP ASP VAL LEU ALA SER TYR PRO PHE PRO SEQRES 27 A 462 ILE ASP CYS LEU GLU LEU ALA LYS THR GLY LYS GLU TYR SEQRES 28 A 462 GLY LEU THR MET THR PRO ALA ASP LYS SER PRO CYS PHE SEQRES 29 A 462 ASN GLU VAL ASN TRP ASP ASN ALA THR PHE LEU LYS ARG SEQRES 30 A 462 GLY PHE LEU PRO ASP GLU GLN PHE PRO PHE LEU ILE HIS SEQRES 31 A 462 PRO THR MET PRO MET ARG GLU ILE HIS GLU SER ILE ARG SEQRES 32 A 462 TRP THR LYS ASP ALA ARG ASN THR GLN ASP HIS VAL ARG SEQRES 33 A 462 SER LEU CYS LEU LEU ALA TRP HIS ASN GLY LYS GLN GLU SEQRES 34 A 462 TYR GLU LYS PHE VAL SER THR ILE ARG SER VAL PRO VAL SEQRES 35 A 462 GLY ARG ALA LEU ALA ILE PRO ASN TYR GLU ASN LEU ARG SEQRES 36 A 462 ARG ASN TRP LEU GLU LEU PHE SEQRES 1 D 22 GLY ALA TYR SER GLY ALA PRO LYS GLN VAL LEU LYS LYS SEQRES 2 D 22 PRO ALA LEU ARG THR ALA THR VAL GLN HET NI A 501 1 HET NI A 502 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI 2(NI 2+) FORMUL 5 HOH *324(H2 O) HELIX 1 1 ASN A 9 GLY A 13 1 5 HELIX 2 2 ASP A 53 SER A 60 1 8 HELIX 3 3 ASP A 71 GLN A 87 1 17 HELIX 4 4 SER A 96 GLY A 103 1 8 HELIX 5 5 LYS A 126 LEU A 131 1 6 HELIX 6 6 VAL A 138 GLY A 149 1 12 HELIX 7 7 ILE A 165 LYS A 170 1 6 HELIX 8 8 SER A 180 ASN A 201 1 22 HELIX 9 9 ASN A 213 LEU A 225 1 13 HELIX 10 10 GLY A 236 LEU A 241 1 6 HELIX 11 11 PRO A 243 ILE A 256 1 14 HELIX 12 12 SER A 259 SER A 264 1 6 HELIX 13 13 ILE A 266 ASN A 270 1 5 HELIX 14 14 GLY A 293 THR A 313 1 21 HELIX 15 15 ASP A 318 LEU A 322 5 5 HELIX 16 16 ASP A 340 GLU A 350 1 11 HELIX 17 17 ASP A 359 SER A 361 5 3 HELIX 18 18 PRO A 394 ARG A 403 1 10 HELIX 19 19 ASP A 407 ARG A 409 5 3 HELIX 20 20 ASN A 410 TRP A 423 1 14 HELIX 21 21 GLY A 426 ARG A 438 1 13 HELIX 22 22 VAL A 440 LEU A 446 1 7 HELIX 23 23 ASN A 450 GLU A 460 1 11 SHEET 1 A 5 GLU A 2 PRO A 8 0 SHEET 2 A 5 LYS A 279 LEU A 284 -1 O THR A 280 N LYS A 7 SHEET 3 A 5 HIS A 271 TYR A 276 -1 N THR A 272 O VAL A 283 SHEET 4 A 5 TYR A 154 VAL A 158 1 N TYR A 154 O HIS A 273 SHEET 5 A 5 LEU A 175 ALA A 178 -1 O ILE A 176 N TYR A 157 SHEET 1 B 2 GLU A 26 PRO A 27 0 SHEET 2 B 2 TRP A 404 THR A 405 -1 O THR A 405 N GLU A 26 SHEET 1 C 2 LYS A 38 PRO A 40 0 SHEET 2 C 2 LEU A 162 SER A 164 -1 O ARG A 163 N GLU A 39 SHEET 1 D 3 SER A 228 PHE A 230 0 SHEET 2 D 3 ASP A 330 TYR A 335 -1 O TYR A 335 N SER A 228 SHEET 3 D 3 ASN A 323 TYR A 327 -1 N TYR A 327 O ASP A 330 SHEET 1 E 2 PHE A 232 TYR A 234 0 SHEET 2 E 2 MET A 355 PRO A 357 -1 O THR A 356 N ASP A 233 SHEET 1 F 2 PHE A 314 LYS A 315 0 SHEET 2 F 2 ALA D 15 LEU D 16 -1 O ALA D 15 N LYS A 315 SHEET 1 G 2 GLY A 378 PRO A 381 0 SHEET 2 G 2 ILE A 389 THR A 392 -1 O HIS A 390 N LEU A 380 LINK NE2 HIS A 31 NI NI A 502 1555 1555 2.24 LINK NI NI A 501 O HOH A 621 1555 1555 2.62 LINK NI NI A 502 O HOH A 730 1555 1555 2.37 LINK NI NI A 502 O HOH A 742 1555 1555 2.19 LINK NI NI A 502 O HOH A 827 1555 1555 2.34 CISPEP 1 TYR A 118 PRO A 119 0 -4.79 CISPEP 2 PRO D 7 LYS D 8 0 -3.53 SITE 1 AC1 4 HIS A 271 HIS A 273 CYS A 282 HOH A 621 SITE 1 AC2 4 HIS A 31 HOH A 730 HOH A 742 HOH A 827 CRYST1 103.596 103.596 132.170 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009653 0.005573 0.000000 0.00000 SCALE2 0.000000 0.011146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007566 0.00000