data_4IKM # _entry.id 4IKM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4IKM pdb_00004ikm 10.2210/pdb4ikm/pdb RCSB RCSB076870 ? ? WWPDB D_1000076870 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-08 2 'Structure model' 1 1 2013-06-05 3 'Structure model' 1 2 2017-08-02 4 'Structure model' 1 3 2017-11-15 5 'Structure model' 2 0 2020-07-29 6 'Structure model' 2 1 2023-09-20 7 'Structure model' 2 2 2024-10-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Source and taxonomy' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Non-polymer description' 11 5 'Structure model' 'Structure summary' 12 6 'Structure model' Advisory 13 6 'Structure model' 'Data collection' 14 6 'Structure model' 'Database references' 15 6 'Structure model' 'Refinement description' 16 6 'Structure model' 'Structure summary' 17 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 3 'Structure model' software 4 4 'Structure model' software 5 5 'Structure model' atom_site 6 5 'Structure model' chem_comp 7 5 'Structure model' entity 8 5 'Structure model' entity_name_com 9 5 'Structure model' pdbx_branch_scheme 10 5 'Structure model' pdbx_chem_comp_identifier 11 5 'Structure model' pdbx_entity_branch 12 5 'Structure model' pdbx_entity_branch_descriptor 13 5 'Structure model' pdbx_entity_branch_link 14 5 'Structure model' pdbx_entity_branch_list 15 5 'Structure model' pdbx_entity_nonpoly 16 5 'Structure model' pdbx_molecule_features 17 5 'Structure model' pdbx_nonpoly_scheme 18 5 'Structure model' struct_conn 19 5 'Structure model' struct_ref_seq_dif 20 5 'Structure model' struct_site 21 5 'Structure model' struct_site_gen 22 6 'Structure model' chem_comp 23 6 'Structure model' chem_comp_atom 24 6 'Structure model' chem_comp_bond 25 6 'Structure model' database_2 26 6 'Structure model' pdbx_initial_refinement_model 27 6 'Structure model' pdbx_unobs_or_zero_occ_atoms 28 7 'Structure model' pdbx_entry_details 29 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_atom_site.B_iso_or_equiv' 3 5 'Structure model' '_atom_site.Cartn_x' 4 5 'Structure model' '_atom_site.Cartn_y' 5 5 'Structure model' '_atom_site.Cartn_z' 6 5 'Structure model' '_atom_site.auth_asym_id' 7 5 'Structure model' '_atom_site.auth_atom_id' 8 5 'Structure model' '_atom_site.auth_comp_id' 9 5 'Structure model' '_atom_site.auth_seq_id' 10 5 'Structure model' '_atom_site.label_atom_id' 11 5 'Structure model' '_atom_site.label_comp_id' 12 5 'Structure model' '_chem_comp.formula' 13 5 'Structure model' '_chem_comp.formula_weight' 14 5 'Structure model' '_chem_comp.id' 15 5 'Structure model' '_chem_comp.mon_nstd_flag' 16 5 'Structure model' '_chem_comp.name' 17 5 'Structure model' '_chem_comp.type' 18 5 'Structure model' '_entity.formula_weight' 19 5 'Structure model' '_entity.pdbx_description' 20 5 'Structure model' '_entity.type' 21 5 'Structure model' '_struct_ref_seq_dif.details' 22 6 'Structure model' '_chem_comp.pdbx_synonyms' 23 6 'Structure model' '_database_2.pdbx_DOI' 24 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4IKM _pdbx_database_status.recvd_initial_deposition_date 2012-12-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jin, T.' 1 'Huang, M.' 2 'Smith, P.' 3 'Jiang, J.' 4 'Xiao, T.' 5 # _citation.id primary _citation.title ;The structure of the CARD8 caspase-recruitment domain suggests its association with the FIIND domain and procaspases through adjacent surfaces. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 69 _citation.page_first 482 _citation.page_last 487 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23695559 _citation.pdbx_database_id_DOI 10.1107/S1744309113010075 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jin, T.' 1 ? primary 'Huang, M.' 2 ? primary 'Smith, P.' 3 ? primary 'Jiang, J.' 4 ? primary 'Xiao, T.S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Maltose-binding periplasmic protein, Caspase recruitment domain-containing protein 8' 53368.055 1 ? ? 'MBP tagged human CARD8 CARD domain' ? 2 branched man 'alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 3 non-polymer syn 'IODIDE ION' 126.904 2 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 5 water nat water 18.015 69 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;MBP, MMBP, Maltodextrin-binding protein, Apoptotic protein NDPP1, CARD-inhibitor of NF-kappa-B-activating ligand, CARDINAL, DACAR, Tumor up-regulated CARD-containing antagonist of CASP9, TUCAN ; 2 alpha-maltose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEI TPAAAFQDKLYPFTWDAVR(IYR)NGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPY FTWPLIAADGGYAFK(TYI)AAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTD(TYI)SIAEAAFNKGETAMTIN GPWAWSNIDTSAVN(IYR)GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVA LKS(TYI)EEELAKDPRIAATMENAQKGEIMPNIPQMSAFW(TYI)AVRTAVINAASGRQTVDAALAAAQTNAVDAAFVK ENHRQLQARMGDLKGVLDDLQDNEVLTENEKELVEQEKTRQSKNEALLSMVEKKGDLALDVLFRSISERDP(TYI)LVS (IYR)LRQQNLAAALEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEI TPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP LIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSA VNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAA TMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAVDAAFVKENHRQLQARMGDLKGVLDDLQDNE VLTENEKELVEQEKTRQSKNEALLSMVEKKGDLALDVLFRSISERDPYLVSYLRQQNLAAALEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'IODIDE ION' IOD 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 ILE n 1 4 GLU n 1 5 GLU n 1 6 GLY n 1 7 LYS n 1 8 LEU n 1 9 VAL n 1 10 ILE n 1 11 TRP n 1 12 ILE n 1 13 ASN n 1 14 GLY n 1 15 ASP n 1 16 LYS n 1 17 GLY n 1 18 TYR n 1 19 ASN n 1 20 GLY n 1 21 LEU n 1 22 ALA n 1 23 GLU n 1 24 VAL n 1 25 GLY n 1 26 LYS n 1 27 LYS n 1 28 PHE n 1 29 GLU n 1 30 LYS n 1 31 ASP n 1 32 THR n 1 33 GLY n 1 34 ILE n 1 35 LYS n 1 36 VAL n 1 37 THR n 1 38 VAL n 1 39 GLU n 1 40 HIS n 1 41 PRO n 1 42 ASP n 1 43 LYS n 1 44 LEU n 1 45 GLU n 1 46 GLU n 1 47 LYS n 1 48 PHE n 1 49 PRO n 1 50 GLN n 1 51 VAL n 1 52 ALA n 1 53 ALA n 1 54 THR n 1 55 GLY n 1 56 ASP n 1 57 GLY n 1 58 PRO n 1 59 ASP n 1 60 ILE n 1 61 ILE n 1 62 PHE n 1 63 TRP n 1 64 ALA n 1 65 HIS n 1 66 ASP n 1 67 ARG n 1 68 PHE n 1 69 GLY n 1 70 GLY n 1 71 TYR n 1 72 ALA n 1 73 GLN n 1 74 SER n 1 75 GLY n 1 76 LEU n 1 77 LEU n 1 78 ALA n 1 79 GLU n 1 80 ILE n 1 81 THR n 1 82 PRO n 1 83 ALA n 1 84 ALA n 1 85 ALA n 1 86 PHE n 1 87 GLN n 1 88 ASP n 1 89 LYS n 1 90 LEU n 1 91 TYR n 1 92 PRO n 1 93 PHE n 1 94 THR n 1 95 TRP n 1 96 ASP n 1 97 ALA n 1 98 VAL n 1 99 ARG n 1 100 IYR n 1 101 ASN n 1 102 GLY n 1 103 LYS n 1 104 LEU n 1 105 ILE n 1 106 ALA n 1 107 TYR n 1 108 PRO n 1 109 ILE n 1 110 ALA n 1 111 VAL n 1 112 GLU n 1 113 ALA n 1 114 LEU n 1 115 SER n 1 116 LEU n 1 117 ILE n 1 118 TYR n 1 119 ASN n 1 120 LYS n 1 121 ASP n 1 122 LEU n 1 123 LEU n 1 124 PRO n 1 125 ASN n 1 126 PRO n 1 127 PRO n 1 128 LYS n 1 129 THR n 1 130 TRP n 1 131 GLU n 1 132 GLU n 1 133 ILE n 1 134 PRO n 1 135 ALA n 1 136 LEU n 1 137 ASP n 1 138 LYS n 1 139 GLU n 1 140 LEU n 1 141 LYS n 1 142 ALA n 1 143 LYS n 1 144 GLY n 1 145 LYS n 1 146 SER n 1 147 ALA n 1 148 LEU n 1 149 MET n 1 150 PHE n 1 151 ASN n 1 152 LEU n 1 153 GLN n 1 154 GLU n 1 155 PRO n 1 156 TYR n 1 157 PHE n 1 158 THR n 1 159 TRP n 1 160 PRO n 1 161 LEU n 1 162 ILE n 1 163 ALA n 1 164 ALA n 1 165 ASP n 1 166 GLY n 1 167 GLY n 1 168 TYR n 1 169 ALA n 1 170 PHE n 1 171 LYS n 1 172 TYI n 1 173 ALA n 1 174 ALA n 1 175 GLY n 1 176 LYS n 1 177 TYR n 1 178 ASP n 1 179 ILE n 1 180 LYS n 1 181 ASP n 1 182 VAL n 1 183 GLY n 1 184 VAL n 1 185 ASP n 1 186 ASN n 1 187 ALA n 1 188 GLY n 1 189 ALA n 1 190 LYS n 1 191 ALA n 1 192 GLY n 1 193 LEU n 1 194 THR n 1 195 PHE n 1 196 LEU n 1 197 VAL n 1 198 ASP n 1 199 LEU n 1 200 ILE n 1 201 LYS n 1 202 ASN n 1 203 LYS n 1 204 HIS n 1 205 MET n 1 206 ASN n 1 207 ALA n 1 208 ASP n 1 209 THR n 1 210 ASP n 1 211 TYI n 1 212 SER n 1 213 ILE n 1 214 ALA n 1 215 GLU n 1 216 ALA n 1 217 ALA n 1 218 PHE n 1 219 ASN n 1 220 LYS n 1 221 GLY n 1 222 GLU n 1 223 THR n 1 224 ALA n 1 225 MET n 1 226 THR n 1 227 ILE n 1 228 ASN n 1 229 GLY n 1 230 PRO n 1 231 TRP n 1 232 ALA n 1 233 TRP n 1 234 SER n 1 235 ASN n 1 236 ILE n 1 237 ASP n 1 238 THR n 1 239 SER n 1 240 ALA n 1 241 VAL n 1 242 ASN n 1 243 IYR n 1 244 GLY n 1 245 VAL n 1 246 THR n 1 247 VAL n 1 248 LEU n 1 249 PRO n 1 250 THR n 1 251 PHE n 1 252 LYS n 1 253 GLY n 1 254 GLN n 1 255 PRO n 1 256 SER n 1 257 LYS n 1 258 PRO n 1 259 PHE n 1 260 VAL n 1 261 GLY n 1 262 VAL n 1 263 LEU n 1 264 SER n 1 265 ALA n 1 266 GLY n 1 267 ILE n 1 268 ASN n 1 269 ALA n 1 270 ALA n 1 271 SER n 1 272 PRO n 1 273 ASN n 1 274 LYS n 1 275 GLU n 1 276 LEU n 1 277 ALA n 1 278 LYS n 1 279 GLU n 1 280 PHE n 1 281 LEU n 1 282 GLU n 1 283 ASN n 1 284 TYR n 1 285 LEU n 1 286 LEU n 1 287 THR n 1 288 ASP n 1 289 GLU n 1 290 GLY n 1 291 LEU n 1 292 GLU n 1 293 ALA n 1 294 VAL n 1 295 ASN n 1 296 LYS n 1 297 ASP n 1 298 LYS n 1 299 PRO n 1 300 LEU n 1 301 GLY n 1 302 ALA n 1 303 VAL n 1 304 ALA n 1 305 LEU n 1 306 LYS n 1 307 SER n 1 308 TYI n 1 309 GLU n 1 310 GLU n 1 311 GLU n 1 312 LEU n 1 313 ALA n 1 314 LYS n 1 315 ASP n 1 316 PRO n 1 317 ARG n 1 318 ILE n 1 319 ALA n 1 320 ALA n 1 321 THR n 1 322 MET n 1 323 GLU n 1 324 ASN n 1 325 ALA n 1 326 GLN n 1 327 LYS n 1 328 GLY n 1 329 GLU n 1 330 ILE n 1 331 MET n 1 332 PRO n 1 333 ASN n 1 334 ILE n 1 335 PRO n 1 336 GLN n 1 337 MET n 1 338 SER n 1 339 ALA n 1 340 PHE n 1 341 TRP n 1 342 TYI n 1 343 ALA n 1 344 VAL n 1 345 ARG n 1 346 THR n 1 347 ALA n 1 348 VAL n 1 349 ILE n 1 350 ASN n 1 351 ALA n 1 352 ALA n 1 353 SER n 1 354 GLY n 1 355 ARG n 1 356 GLN n 1 357 THR n 1 358 VAL n 1 359 ASP n 1 360 ALA n 1 361 ALA n 1 362 LEU n 1 363 ALA n 1 364 ALA n 1 365 ALA n 1 366 GLN n 1 367 THR n 1 368 ASN n 1 369 ALA n 1 370 VAL n 1 371 ASP n 1 372 ALA n 1 373 ALA n 1 374 PHE n 1 375 VAL n 1 376 LYS n 1 377 GLU n 1 378 ASN n 1 379 HIS n 1 380 ARG n 1 381 GLN n 1 382 LEU n 1 383 GLN n 1 384 ALA n 1 385 ARG n 1 386 MET n 1 387 GLY n 1 388 ASP n 1 389 LEU n 1 390 LYS n 1 391 GLY n 1 392 VAL n 1 393 LEU n 1 394 ASP n 1 395 ASP n 1 396 LEU n 1 397 GLN n 1 398 ASP n 1 399 ASN n 1 400 GLU n 1 401 VAL n 1 402 LEU n 1 403 THR n 1 404 GLU n 1 405 ASN n 1 406 GLU n 1 407 LYS n 1 408 GLU n 1 409 LEU n 1 410 VAL n 1 411 GLU n 1 412 GLN n 1 413 GLU n 1 414 LYS n 1 415 THR n 1 416 ARG n 1 417 GLN n 1 418 SER n 1 419 LYS n 1 420 ASN n 1 421 GLU n 1 422 ALA n 1 423 LEU n 1 424 LEU n 1 425 SER n 1 426 MET n 1 427 VAL n 1 428 GLU n 1 429 LYS n 1 430 LYS n 1 431 GLY n 1 432 ASP n 1 433 LEU n 1 434 ALA n 1 435 LEU n 1 436 ASP n 1 437 VAL n 1 438 LEU n 1 439 PHE n 1 440 ARG n 1 441 SER n 1 442 ILE n 1 443 SER n 1 444 GLU n 1 445 ARG n 1 446 ASP n 1 447 PRO n 1 448 TYI n 1 449 LEU n 1 450 VAL n 1 451 SER n 1 452 IYR n 1 453 LEU n 1 454 ARG n 1 455 GLN n 1 456 GLN n 1 457 ASN n 1 458 LEU n 1 459 ALA n 1 460 ALA n 1 461 ALA n 1 462 LEU n 1 463 GLU n 1 464 HIS n 1 465 HIS n 1 466 HIS n 1 467 HIS n 1 468 HIS n 1 469 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 2 367 human ? 'b4034, CARD8, TUCAN, CARDINAL, JW3994, malE, KIAA0955, NDPP1' ? K12 ? ? ? ? 'Escherichia coli' 83333 ? ? ? ? ? ? ? ? 'Escherichia coli' 511693 ? ? ? ? ? ? BL21 ? ? ? ? ? ? ? plasmid ? ? ? pET30a ? ? 1 2 sample ? 372 458 human ? 'b4034, CARD8, TUCAN, CARDINAL, JW3994, malE, KIAA0955, NDPP1' ? K12 ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 511693 ? ? ? ? ? ? BL21 ? ? ? ? ? ? ? plasmid ? ? ? pET30a ? ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpa1-4DGlcpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1a_1-5]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Glcp]{[(4+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 IYR 'L-peptide linking' n 3-IODO-TYROSINE ? 'C9 H10 I N O3' 307.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYI 'L-peptide linking' n 3,5-DIIODOTYROSINE ? 'C9 H9 I2 N O3' 432.982 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 TRP 95 95 95 TRP TRP A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 IYR 100 100 100 IYR IYR A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 ASN 125 125 125 ASN ASN A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 THR 129 129 129 THR THR A . n A 1 130 TRP 130 130 130 TRP TRP A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 PRO 134 134 134 PRO PRO A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 MET 149 149 149 MET MET A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 PRO 155 155 155 PRO PRO A . n A 1 156 TYR 156 156 156 TYR TYR A . n A 1 157 PHE 157 157 157 PHE PHE A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 TRP 159 159 159 TRP TRP A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 TYR 168 168 168 TYR TYR A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 PHE 170 170 170 PHE PHE A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 TYI 172 172 172 TYI TYI A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 ASP 178 178 178 ASP ASP A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 VAL 182 182 182 VAL VAL A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 ASP 185 185 185 ASP ASP A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 ALA 187 187 187 ALA ALA A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 LYS 190 190 190 LYS LYS A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 THR 194 194 194 THR THR A . n A 1 195 PHE 195 195 195 PHE PHE A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 VAL 197 197 197 VAL VAL A . n A 1 198 ASP 198 198 198 ASP ASP A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 ILE 200 200 200 ILE ILE A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 ASN 202 202 202 ASN ASN A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 HIS 204 204 204 HIS HIS A . n A 1 205 MET 205 205 205 MET MET A . n A 1 206 ASN 206 206 206 ASN ASN A . n A 1 207 ALA 207 207 207 ALA ALA A . n A 1 208 ASP 208 208 208 ASP ASP A . n A 1 209 THR 209 209 209 THR THR A . n A 1 210 ASP 210 210 210 ASP ASP A . n A 1 211 TYI 211 211 211 TYI TYI A . n A 1 212 SER 212 212 212 SER SER A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 ALA 214 214 214 ALA ALA A . n A 1 215 GLU 215 215 215 GLU GLU A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 ALA 217 217 217 ALA ALA A . n A 1 218 PHE 218 218 218 PHE PHE A . n A 1 219 ASN 219 219 219 ASN ASN A . n A 1 220 LYS 220 220 220 LYS LYS A . n A 1 221 GLY 221 221 221 GLY GLY A . n A 1 222 GLU 222 222 222 GLU GLU A . n A 1 223 THR 223 223 223 THR THR A . n A 1 224 ALA 224 224 224 ALA ALA A . n A 1 225 MET 225 225 225 MET MET A . n A 1 226 THR 226 226 226 THR THR A . n A 1 227 ILE 227 227 227 ILE ILE A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 PRO 230 230 230 PRO PRO A . n A 1 231 TRP 231 231 231 TRP TRP A . n A 1 232 ALA 232 232 232 ALA ALA A . n A 1 233 TRP 233 233 233 TRP TRP A . n A 1 234 SER 234 234 234 SER SER A . n A 1 235 ASN 235 235 235 ASN ASN A . n A 1 236 ILE 236 236 236 ILE ILE A . n A 1 237 ASP 237 237 237 ASP ASP A . n A 1 238 THR 238 238 238 THR THR A . n A 1 239 SER 239 239 239 SER SER A . n A 1 240 ALA 240 240 240 ALA ALA A . n A 1 241 VAL 241 241 241 VAL VAL A . n A 1 242 ASN 242 242 242 ASN ASN A . n A 1 243 IYR 243 243 243 IYR IYR A . n A 1 244 GLY 244 244 244 GLY GLY A . n A 1 245 VAL 245 245 245 VAL VAL A . n A 1 246 THR 246 246 246 THR THR A . n A 1 247 VAL 247 247 247 VAL VAL A . n A 1 248 LEU 248 248 248 LEU LEU A . n A 1 249 PRO 249 249 249 PRO PRO A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 PHE 251 251 251 PHE PHE A . n A 1 252 LYS 252 252 252 LYS LYS A . n A 1 253 GLY 253 253 253 GLY GLY A . n A 1 254 GLN 254 254 254 GLN GLN A . n A 1 255 PRO 255 255 255 PRO PRO A . n A 1 256 SER 256 256 256 SER SER A . n A 1 257 LYS 257 257 257 LYS LYS A . n A 1 258 PRO 258 258 258 PRO PRO A . n A 1 259 PHE 259 259 259 PHE PHE A . n A 1 260 VAL 260 260 260 VAL VAL A . n A 1 261 GLY 261 261 261 GLY GLY A . n A 1 262 VAL 262 262 262 VAL VAL A . n A 1 263 LEU 263 263 263 LEU LEU A . n A 1 264 SER 264 264 264 SER SER A . n A 1 265 ALA 265 265 265 ALA ALA A . n A 1 266 GLY 266 266 266 GLY GLY A . n A 1 267 ILE 267 267 267 ILE ILE A . n A 1 268 ASN 268 268 268 ASN ASN A . n A 1 269 ALA 269 269 269 ALA ALA A . n A 1 270 ALA 270 270 270 ALA ALA A . n A 1 271 SER 271 271 271 SER SER A . n A 1 272 PRO 272 272 272 PRO PRO A . n A 1 273 ASN 273 273 273 ASN ASN A . n A 1 274 LYS 274 274 274 LYS LYS A . n A 1 275 GLU 275 275 275 GLU GLU A . n A 1 276 LEU 276 276 276 LEU LEU A . n A 1 277 ALA 277 277 277 ALA ALA A . n A 1 278 LYS 278 278 278 LYS LYS A . n A 1 279 GLU 279 279 279 GLU GLU A . n A 1 280 PHE 280 280 280 PHE PHE A . n A 1 281 LEU 281 281 281 LEU LEU A . n A 1 282 GLU 282 282 282 GLU GLU A . n A 1 283 ASN 283 283 283 ASN ASN A . n A 1 284 TYR 284 284 284 TYR TYR A . n A 1 285 LEU 285 285 285 LEU LEU A . n A 1 286 LEU 286 286 286 LEU LEU A . n A 1 287 THR 287 287 287 THR THR A . n A 1 288 ASP 288 288 288 ASP ASP A . n A 1 289 GLU 289 289 289 GLU GLU A . n A 1 290 GLY 290 290 290 GLY GLY A . n A 1 291 LEU 291 291 291 LEU LEU A . n A 1 292 GLU 292 292 292 GLU GLU A . n A 1 293 ALA 293 293 293 ALA ALA A . n A 1 294 VAL 294 294 294 VAL VAL A . n A 1 295 ASN 295 295 295 ASN ASN A . n A 1 296 LYS 296 296 296 LYS LYS A . n A 1 297 ASP 297 297 297 ASP ASP A . n A 1 298 LYS 298 298 298 LYS LYS A . n A 1 299 PRO 299 299 299 PRO PRO A . n A 1 300 LEU 300 300 300 LEU LEU A . n A 1 301 GLY 301 301 301 GLY GLY A . n A 1 302 ALA 302 302 302 ALA ALA A . n A 1 303 VAL 303 303 303 VAL VAL A . n A 1 304 ALA 304 304 304 ALA ALA A . n A 1 305 LEU 305 305 305 LEU LEU A . n A 1 306 LYS 306 306 306 LYS LYS A . n A 1 307 SER 307 307 307 SER SER A . n A 1 308 TYI 308 308 308 TYI TYI A . n A 1 309 GLU 309 309 309 GLU GLU A . n A 1 310 GLU 310 310 310 GLU GLU A . n A 1 311 GLU 311 311 311 GLU GLU A . n A 1 312 LEU 312 312 312 LEU LEU A . n A 1 313 ALA 313 313 313 ALA ALA A . n A 1 314 LYS 314 314 314 LYS LYS A . n A 1 315 ASP 315 315 315 ASP ASP A . n A 1 316 PRO 316 316 316 PRO PRO A . n A 1 317 ARG 317 317 317 ARG ARG A . n A 1 318 ILE 318 318 318 ILE ILE A . n A 1 319 ALA 319 319 319 ALA ALA A . n A 1 320 ALA 320 320 320 ALA ALA A . n A 1 321 THR 321 321 321 THR THR A . n A 1 322 MET 322 322 322 MET MET A . n A 1 323 GLU 323 323 323 GLU GLU A . n A 1 324 ASN 324 324 324 ASN ASN A . n A 1 325 ALA 325 325 325 ALA ALA A . n A 1 326 GLN 326 326 326 GLN GLN A . n A 1 327 LYS 327 327 327 LYS LYS A . n A 1 328 GLY 328 328 328 GLY GLY A . n A 1 329 GLU 329 329 329 GLU GLU A . n A 1 330 ILE 330 330 330 ILE ILE A . n A 1 331 MET 331 331 331 MET MET A . n A 1 332 PRO 332 332 332 PRO PRO A . n A 1 333 ASN 333 333 333 ASN ASN A . n A 1 334 ILE 334 334 334 ILE ILE A . n A 1 335 PRO 335 335 335 PRO PRO A . n A 1 336 GLN 336 336 336 GLN GLN A . n A 1 337 MET 337 337 337 MET MET A . n A 1 338 SER 338 338 338 SER SER A . n A 1 339 ALA 339 339 339 ALA ALA A . n A 1 340 PHE 340 340 340 PHE PHE A . n A 1 341 TRP 341 341 341 TRP TRP A . n A 1 342 TYI 342 342 342 TYI TYI A . n A 1 343 ALA 343 343 343 ALA ALA A . n A 1 344 VAL 344 344 344 VAL VAL A . n A 1 345 ARG 345 345 345 ARG ARG A . n A 1 346 THR 346 346 346 THR THR A . n A 1 347 ALA 347 347 347 ALA ALA A . n A 1 348 VAL 348 348 348 VAL VAL A . n A 1 349 ILE 349 349 349 ILE ILE A . n A 1 350 ASN 350 350 350 ASN ASN A . n A 1 351 ALA 351 351 351 ALA ALA A . n A 1 352 ALA 352 352 352 ALA ALA A . n A 1 353 SER 353 353 353 SER SER A . n A 1 354 GLY 354 354 354 GLY GLY A . n A 1 355 ARG 355 355 355 ARG ARG A . n A 1 356 GLN 356 356 356 GLN GLN A . n A 1 357 THR 357 357 357 THR THR A . n A 1 358 VAL 358 358 358 VAL VAL A . n A 1 359 ASP 359 359 359 ASP ASP A . n A 1 360 ALA 360 360 360 ALA ALA A . n A 1 361 ALA 361 361 361 ALA ALA A . n A 1 362 LEU 362 362 362 LEU LEU A . n A 1 363 ALA 363 363 363 ALA ALA A . n A 1 364 ALA 364 364 364 ALA ALA A . n A 1 365 ALA 365 365 365 ALA ALA A . n A 1 366 GLN 366 366 366 GLN GLN A . n A 1 367 THR 367 367 367 THR THR A . n A 1 368 ASN 368 368 368 ASN ASN A . n A 1 369 ALA 369 369 369 ALA ALA A . n A 1 370 VAL 370 370 370 VAL VAL A . n A 1 371 ASP 371 371 371 ASP ASP A . n A 1 372 ALA 372 372 372 ALA ALA A . n A 1 373 ALA 373 373 373 ALA ALA A . n A 1 374 PHE 374 374 374 PHE PHE A . n A 1 375 VAL 375 375 375 VAL VAL A . n A 1 376 LYS 376 376 376 LYS LYS A . n A 1 377 GLU 377 377 377 GLU GLU A . n A 1 378 ASN 378 378 378 ASN ASN A . n A 1 379 HIS 379 379 379 HIS HIS A . n A 1 380 ARG 380 380 380 ARG ARG A . n A 1 381 GLN 381 381 381 GLN GLN A . n A 1 382 LEU 382 382 382 LEU LEU A . n A 1 383 GLN 383 383 383 GLN GLN A . n A 1 384 ALA 384 384 384 ALA ALA A . n A 1 385 ARG 385 385 385 ARG ARG A . n A 1 386 MET 386 386 386 MET MET A . n A 1 387 GLY 387 387 387 GLY GLY A . n A 1 388 ASP 388 388 388 ASP ASP A . n A 1 389 LEU 389 389 389 LEU LEU A . n A 1 390 LYS 390 390 390 LYS LYS A . n A 1 391 GLY 391 391 391 GLY GLY A . n A 1 392 VAL 392 392 392 VAL VAL A . n A 1 393 LEU 393 393 393 LEU LEU A . n A 1 394 ASP 394 394 394 ASP ASP A . n A 1 395 ASP 395 395 395 ASP ASP A . n A 1 396 LEU 396 396 396 LEU LEU A . n A 1 397 GLN 397 397 397 GLN GLN A . n A 1 398 ASP 398 398 398 ASP ASP A . n A 1 399 ASN 399 399 399 ASN ASN A . n A 1 400 GLU 400 400 400 GLU GLU A . n A 1 401 VAL 401 401 401 VAL VAL A . n A 1 402 LEU 402 402 402 LEU LEU A . n A 1 403 THR 403 403 403 THR THR A . n A 1 404 GLU 404 404 404 GLU GLU A . n A 1 405 ASN 405 405 405 ASN ASN A . n A 1 406 GLU 406 406 406 GLU GLU A . n A 1 407 LYS 407 407 407 LYS LYS A . n A 1 408 GLU 408 408 408 GLU GLU A . n A 1 409 LEU 409 409 409 LEU LEU A . n A 1 410 VAL 410 410 410 VAL VAL A . n A 1 411 GLU 411 411 411 GLU GLU A . n A 1 412 GLN 412 412 412 GLN GLN A . n A 1 413 GLU 413 413 413 GLU GLU A . n A 1 414 LYS 414 414 414 LYS LYS A . n A 1 415 THR 415 415 415 THR THR A . n A 1 416 ARG 416 416 416 ARG ARG A . n A 1 417 GLN 417 417 417 GLN GLN A . n A 1 418 SER 418 418 418 SER SER A . n A 1 419 LYS 419 419 419 LYS LYS A . n A 1 420 ASN 420 420 420 ASN ASN A . n A 1 421 GLU 421 421 421 GLU GLU A . n A 1 422 ALA 422 422 422 ALA ALA A . n A 1 423 LEU 423 423 423 LEU LEU A . n A 1 424 LEU 424 424 424 LEU LEU A . n A 1 425 SER 425 425 425 SER SER A . n A 1 426 MET 426 426 426 MET MET A . n A 1 427 VAL 427 427 427 VAL VAL A . n A 1 428 GLU 428 428 428 GLU GLU A . n A 1 429 LYS 429 429 429 LYS LYS A . n A 1 430 LYS 430 430 430 LYS LYS A . n A 1 431 GLY 431 431 431 GLY GLY A . n A 1 432 ASP 432 432 432 ASP ASP A . n A 1 433 LEU 433 433 433 LEU LEU A . n A 1 434 ALA 434 434 434 ALA ALA A . n A 1 435 LEU 435 435 435 LEU LEU A . n A 1 436 ASP 436 436 436 ASP ASP A . n A 1 437 VAL 437 437 437 VAL VAL A . n A 1 438 LEU 438 438 438 LEU LEU A . n A 1 439 PHE 439 439 439 PHE PHE A . n A 1 440 ARG 440 440 440 ARG ARG A . n A 1 441 SER 441 441 441 SER SER A . n A 1 442 ILE 442 442 442 ILE ILE A . n A 1 443 SER 443 443 443 SER SER A . n A 1 444 GLU 444 444 444 GLU GLU A . n A 1 445 ARG 445 445 445 ARG ARG A . n A 1 446 ASP 446 446 446 ASP ASP A . n A 1 447 PRO 447 447 447 PRO PRO A . n A 1 448 TYI 448 448 448 TYI TYI A . n A 1 449 LEU 449 449 449 LEU LEU A . n A 1 450 VAL 450 450 450 VAL VAL A . n A 1 451 SER 451 451 451 SER SER A . n A 1 452 IYR 452 452 452 IYR IYR A . n A 1 453 LEU 453 453 453 LEU LEU A . n A 1 454 ARG 454 454 454 ARG ARG A . n A 1 455 GLN 455 455 455 GLN GLN A . n A 1 456 GLN 456 456 456 GLN GLN A . n A 1 457 ASN 457 457 457 ASN ASN A . n A 1 458 LEU 458 458 458 LEU LEU A . n A 1 459 ALA 459 459 459 ALA ALA A . n A 1 460 ALA 460 460 460 ALA ALA A . n A 1 461 ALA 461 461 461 ALA ALA A . n A 1 462 LEU 462 462 462 LEU LEU A . n A 1 463 GLU 463 463 463 GLU GLU A . n A 1 464 HIS 464 464 ? ? ? A . n A 1 465 HIS 465 465 ? ? ? A . n A 1 466 HIS 466 466 ? ? ? A . n A 1 467 HIS 467 467 ? ? ? A . n A 1 468 HIS 468 468 ? ? ? A . n A 1 469 HIS 469 469 ? ? ? A . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GLC 1 B GLC 1 B MAL 70 n B 2 GLC 2 B GLC 2 B MAL 70 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IOD 1 502 71 IOD IOD A . D 3 IOD 1 503 72 IOD IOD A . E 4 EDO 1 504 73 EDO EDO A . F 4 EDO 1 505 74 EDO EDO A . G 5 HOH 1 601 1 HOH HOH A . G 5 HOH 2 602 2 HOH HOH A . G 5 HOH 3 603 3 HOH HOH A . G 5 HOH 4 604 4 HOH HOH A . G 5 HOH 5 605 5 HOH HOH A . G 5 HOH 6 606 6 HOH HOH A . G 5 HOH 7 607 7 HOH HOH A . G 5 HOH 8 608 8 HOH HOH A . G 5 HOH 9 609 9 HOH HOH A . G 5 HOH 10 610 10 HOH HOH A . G 5 HOH 11 611 11 HOH HOH A . G 5 HOH 12 612 12 HOH HOH A . G 5 HOH 13 613 13 HOH HOH A . G 5 HOH 14 614 14 HOH HOH A . G 5 HOH 15 615 15 HOH HOH A . G 5 HOH 16 616 16 HOH HOH A . G 5 HOH 17 617 17 HOH HOH A . G 5 HOH 18 618 18 HOH HOH A . G 5 HOH 19 619 19 HOH HOH A . G 5 HOH 20 620 20 HOH HOH A . G 5 HOH 21 621 21 HOH HOH A . G 5 HOH 22 622 22 HOH HOH A . G 5 HOH 23 623 23 HOH HOH A . G 5 HOH 24 624 24 HOH HOH A . G 5 HOH 25 625 25 HOH HOH A . G 5 HOH 26 626 26 HOH HOH A . G 5 HOH 27 627 27 HOH HOH A . G 5 HOH 28 628 28 HOH HOH A . G 5 HOH 29 629 29 HOH HOH A . G 5 HOH 30 630 30 HOH HOH A . G 5 HOH 31 631 31 HOH HOH A . G 5 HOH 32 632 32 HOH HOH A . G 5 HOH 33 633 33 HOH HOH A . G 5 HOH 34 634 34 HOH HOH A . G 5 HOH 35 635 35 HOH HOH A . G 5 HOH 36 636 36 HOH HOH A . G 5 HOH 37 637 37 HOH HOH A . G 5 HOH 38 638 38 HOH HOH A . G 5 HOH 39 639 39 HOH HOH A . G 5 HOH 40 640 40 HOH HOH A . G 5 HOH 41 641 41 HOH HOH A . G 5 HOH 42 642 42 HOH HOH A . G 5 HOH 43 643 43 HOH HOH A . G 5 HOH 44 644 44 HOH HOH A . G 5 HOH 45 645 45 HOH HOH A . G 5 HOH 46 646 46 HOH HOH A . G 5 HOH 47 647 47 HOH HOH A . G 5 HOH 48 648 48 HOH HOH A . G 5 HOH 49 649 49 HOH HOH A . G 5 HOH 50 650 50 HOH HOH A . G 5 HOH 51 651 51 HOH HOH A . G 5 HOH 52 652 52 HOH HOH A . G 5 HOH 53 653 53 HOH HOH A . G 5 HOH 54 654 54 HOH HOH A . G 5 HOH 55 655 55 HOH HOH A . G 5 HOH 56 656 56 HOH HOH A . G 5 HOH 57 657 57 HOH HOH A . G 5 HOH 58 658 58 HOH HOH A . G 5 HOH 59 659 59 HOH HOH A . G 5 HOH 60 660 60 HOH HOH A . G 5 HOH 61 661 61 HOH HOH A . G 5 HOH 62 662 62 HOH HOH A . G 5 HOH 63 663 63 HOH HOH A . G 5 HOH 64 664 64 HOH HOH A . G 5 HOH 65 665 65 HOH HOH A . G 5 HOH 66 666 66 HOH HOH A . G 5 HOH 67 667 67 HOH HOH A . G 5 HOH 68 668 68 HOH HOH A . G 5 HOH 69 669 69 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A TYI 172 ? CG ? A TYI 172 CG 2 1 Y 0 A TYI 172 ? CE2 ? A TYI 172 CE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: dev_1217)' ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 4IKM _cell.length_a 94.877 _cell.length_b 94.877 _cell.length_c 219.390 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IKM _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4IKM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_percent_sol 53.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '16% PEG8000, 0.1 M NaI, 0.1 M NaAc, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2012-07-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4IKM _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.45 _reflns.number_obs 21951 _reflns.number_all 21995 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.45 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.945 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.6 _reflns_shell.pdbx_redundancy 18.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4IKM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 21881 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.438 _refine.ls_d_res_high 2.4606 _refine.ls_percent_reflns_obs 99.34 _refine.ls_R_factor_obs 0.2032 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2007 _refine.ls_R_factor_R_free 0.2533 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.12 _refine.ls_number_reflns_R_free 1121 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3VD8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.37 _refine.pdbx_overall_phase_error 26.32 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3601 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 3703 _refine_hist.d_res_high 2.4606 _refine_hist.d_res_low 47.438 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 3706 'X-RAY DIFFRACTION' ? f_angle_d 0.853 ? ? 5033 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 11.586 ? ? 1343 'X-RAY DIFFRACTION' ? f_chiral_restr 0.057 ? ? 558 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 649 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.4606 2.5726 2443 0.2859 96.00 0.3700 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.5726 2.7082 2543 0.2606 100.00 0.3379 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.7082 2.8779 2548 0.2417 100.00 0.2972 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.8779 3.1001 2555 0.2403 100.00 0.2855 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.1001 3.4120 2582 0.2162 100.00 0.2706 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.4120 3.9055 2614 0.1886 100.00 0.2809 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.9055 4.9197 2648 0.1676 100.00 0.1991 . . 144 . . . . 'X-RAY DIFFRACTION' . 4.9197 47.4473 2827 0.1982 99.00 0.2408 . . 131 . . . . # _database_PDB_matrix.entry_id 4IKM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4IKM _struct.title 'X-ray structure of CARD8 CARD domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IKM _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'Death fold superfamily, six-helix bundle, inflammasome, apoptosis, innate immune system, signal transduction, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MALE_ECOLI P0AEX9 1 ;KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT MENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQT ; 27 ? 2 UNP CARD8_HUMAN Q9Y2G2 1 ;AAFVKENHRQLQARMGDLKGVLDDLQDNEVLTENEKELVEQEKTRQSKNEALLSMVEKKGDLALDVLFRSISERDPYLVS YLRQQNL ; 345 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4IKM A 2 ? 367 ? P0AEX9 27 ? 392 ? 2 367 2 2 4IKM A 372 ? 458 ? Q9Y2G2 345 ? 431 ? 372 458 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4IKM MET A 1 ? UNP P0AEX9 ? ? 'expression tag' 1 1 1 4IKM ALA A 83 ? UNP P0AEX9 ASP 108 conflict 83 2 1 4IKM ALA A 84 ? UNP P0AEX9 LYS 109 conflict 84 3 1 4IKM ALA A 173 ? UNP P0AEX9 GLU 198 conflict 173 4 1 4IKM ALA A 174 ? UNP P0AEX9 ASN 199 conflict 174 5 1 4IKM ALA A 240 ? UNP P0AEX9 LYS 265 conflict 240 6 1 4IKM ALA A 360 ? UNP P0AEX9 GLU 385 conflict 360 7 1 4IKM ALA A 363 ? UNP P0AEX9 LYS 388 conflict 363 8 1 4IKM ALA A 364 ? UNP P0AEX9 ASP 389 conflict 364 9 1 4IKM ASN A 368 ? UNP P0AEX9 ? ? 'expression tag' 368 10 1 4IKM ALA A 369 ? UNP P0AEX9 ? ? 'expression tag' 369 11 1 4IKM VAL A 370 ? UNP P0AEX9 ? ? 'expression tag' 370 12 1 4IKM ASP A 371 ? UNP P0AEX9 ? ? 'expression tag' 371 13 2 4IKM ALA A 459 ? UNP Q9Y2G2 ? ? 'expression tag' 459 14 2 4IKM ALA A 460 ? UNP Q9Y2G2 ? ? 'expression tag' 460 15 2 4IKM ALA A 461 ? UNP Q9Y2G2 ? ? 'expression tag' 461 16 2 4IKM LEU A 462 ? UNP Q9Y2G2 ? ? 'expression tag' 462 17 2 4IKM GLU A 463 ? UNP Q9Y2G2 ? ? 'expression tag' 463 18 2 4IKM HIS A 464 ? UNP Q9Y2G2 ? ? 'expression tag' 464 19 2 4IKM HIS A 465 ? UNP Q9Y2G2 ? ? 'expression tag' 465 20 2 4IKM HIS A 466 ? UNP Q9Y2G2 ? ? 'expression tag' 466 21 2 4IKM HIS A 467 ? UNP Q9Y2G2 ? ? 'expression tag' 467 22 2 4IKM HIS A 468 ? UNP Q9Y2G2 ? ? 'expression tag' 468 23 2 4IKM HIS A 469 ? UNP Q9Y2G2 ? ? 'expression tag' 469 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 17 ? GLY A 33 ? GLY A 17 GLY A 33 1 ? 17 HELX_P HELX_P2 2 LYS A 43 ? ALA A 53 ? LYS A 43 ALA A 53 1 ? 11 HELX_P HELX_P3 3 ARG A 67 ? SER A 74 ? ARG A 67 SER A 74 1 ? 8 HELX_P HELX_P4 4 ALA A 83 ? ASP A 88 ? ALA A 83 ASP A 88 1 ? 6 HELX_P HELX_P5 5 TYR A 91 ? VAL A 98 ? TYR A 91 VAL A 98 1 ? 8 HELX_P HELX_P6 6 GLU A 132 ? LYS A 141 ? GLU A 132 LYS A 141 1 ? 10 HELX_P HELX_P7 7 ALA A 142 ? GLY A 144 ? ALA A 142 GLY A 144 5 ? 3 HELX_P HELX_P8 8 GLU A 154 ? ASP A 165 ? GLU A 154 ASP A 165 1 ? 12 HELX_P HELX_P9 9 ASN A 186 ? ASN A 202 ? ASN A 186 ASN A 202 1 ? 17 HELX_P HELX_P10 10 ASP A 210 ? LYS A 220 ? ASP A 210 LYS A 220 1 ? 11 HELX_P HELX_P11 11 GLY A 229 ? TRP A 231 ? GLY A 229 TRP A 231 5 ? 3 HELX_P HELX_P12 12 ALA A 232 ? SER A 239 ? ALA A 232 SER A 239 1 ? 8 HELX_P HELX_P13 13 ASN A 273 ? TYR A 284 ? ASN A 273 TYR A 284 1 ? 12 HELX_P HELX_P14 14 THR A 287 ? LYS A 298 ? THR A 287 LYS A 298 1 ? 12 HELX_P HELX_P15 15 LEU A 305 ? ALA A 313 ? LEU A 305 ALA A 313 1 ? 9 HELX_P HELX_P16 16 ASP A 315 ? LYS A 327 ? ASP A 315 LYS A 327 1 ? 13 HELX_P HELX_P17 17 GLN A 336 ? SER A 353 ? GLN A 336 SER A 353 1 ? 18 HELX_P HELX_P18 18 THR A 357 ? ALA A 369 ? THR A 357 ALA A 369 1 ? 13 HELX_P HELX_P19 19 VAL A 370 ? ASN A 378 ? VAL A 370 ASN A 378 1 ? 9 HELX_P HELX_P20 20 ASN A 378 ? MET A 386 ? ASN A 378 MET A 386 1 ? 9 HELX_P HELX_P21 21 LEU A 389 ? ASN A 399 ? LEU A 389 ASN A 399 1 ? 11 HELX_P HELX_P22 22 THR A 403 ? GLU A 413 ? THR A 403 GLU A 413 1 ? 11 HELX_P HELX_P23 23 THR A 415 ? LYS A 429 ? THR A 415 LYS A 429 1 ? 15 HELX_P HELX_P24 24 GLY A 431 ? ASP A 446 ? GLY A 431 ASP A 446 1 ? 16 HELX_P HELX_P25 25 ASP A 446 ? GLU A 463 ? ASP A 446 GLU A 463 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ARG 99 C ? ? ? 1_555 A IYR 100 N ? ? A ARG 99 A IYR 100 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A IYR 100 C ? ? ? 1_555 A ASN 101 N ? ? A IYR 100 A ASN 101 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A LYS 171 C ? ? ? 1_555 A TYI 172 N ? ? A LYS 171 A TYI 172 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A TYI 172 C ? ? ? 1_555 A ALA 173 N ? ? A TYI 172 A ALA 173 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A ASP 210 C ? ? ? 1_555 A TYI 211 N ? ? A ASP 210 A TYI 211 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? A TYI 211 C ? ? ? 1_555 A SER 212 N ? ? A TYI 211 A SER 212 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale7 covale both ? A ASN 242 C ? ? ? 1_555 A IYR 243 N ? ? A ASN 242 A IYR 243 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? A IYR 243 C ? ? ? 1_555 A GLY 244 N ? ? A IYR 243 A GLY 244 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? A SER 307 C ? ? ? 1_555 A TYI 308 N ? ? A SER 307 A TYI 308 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? A TYI 308 C ? ? ? 1_555 A GLU 309 N ? ? A TYI 308 A GLU 309 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale11 covale both ? A TRP 341 C ? ? ? 1_555 A TYI 342 N ? ? A TRP 341 A TYI 342 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale12 covale both ? A TYI 342 C ? ? ? 1_555 A ALA 343 N ? ? A TYI 342 A ALA 343 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale13 covale both ? A PRO 447 C ? ? ? 1_555 A TYI 448 N ? ? A PRO 447 A TYI 448 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? A TYI 448 C ? ? ? 1_555 A LEU 449 N ? ? A TYI 448 A LEU 449 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? A SER 451 C ? ? ? 1_555 A IYR 452 N ? ? A SER 451 A IYR 452 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale16 covale both ? A IYR 452 C ? ? ? 1_555 A LEU 453 N ? ? A IYR 452 A LEU 453 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale17 covale both ? B GLC . O4 ? ? ? 1_555 B GLC . C1 ? ? B GLC 1 B GLC 2 1_555 ? ? ? ? ? ? ? 1.359 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 IYR A 100 ? . . . . IYR A 100 ? 1_555 . . . . . . . TYR 1 IYR Iodination 'Named protein modification' 2 TYI A 172 ? . . . . TYI A 172 ? 1_555 . . . . . . . TYR 1 TYI Iodination 'Named protein modification' 3 TYI A 211 ? . . . . TYI A 211 ? 1_555 . . . . . . . TYR 1 TYI Iodination 'Named protein modification' 4 IYR A 243 ? . . . . IYR A 243 ? 1_555 . . . . . . . TYR 1 IYR Iodination 'Named protein modification' 5 TYI A 308 ? . . . . TYI A 308 ? 1_555 . . . . . . . TYR 1 TYI Iodination 'Named protein modification' 6 TYI A 342 ? . . . . TYI A 342 ? 1_555 . . . . . . . TYR 1 TYI Iodination 'Named protein modification' 7 TYI A 448 ? . . . . TYI A 448 ? 1_555 . . . . . . . TYR 1 TYI Iodination 'Named protein modification' 8 IYR A 452 ? . . . . IYR A 452 ? 1_555 . . . . . . . TYR 1 IYR Iodination 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 2 ? D ? 4 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 35 ? GLU A 39 ? LYS A 35 GLU A 39 A 2 LYS A 7 ? TRP A 11 ? LYS A 7 TRP A 11 A 3 ILE A 60 ? ALA A 64 ? ILE A 60 ALA A 64 A 4 PHE A 259 ? ILE A 267 ? PHE A 259 ILE A 267 A 5 TYR A 107 ? GLU A 112 ? TYR A 107 GLU A 112 A 6 ALA A 302 ? VAL A 303 ? ALA A 302 VAL A 303 B 1 LYS A 35 ? GLU A 39 ? LYS A 35 GLU A 39 B 2 LYS A 7 ? TRP A 11 ? LYS A 7 TRP A 11 B 3 ILE A 60 ? ALA A 64 ? ILE A 60 ALA A 64 B 4 PHE A 259 ? ILE A 267 ? PHE A 259 ILE A 267 B 5 GLU A 329 ? ILE A 330 ? GLU A 329 ILE A 330 C 1 ARG A 99 ? IYR A 100 ? ARG A 99 IYR A 100 C 2 LYS A 103 ? LEU A 104 ? LYS A 103 LEU A 104 D 1 SER A 146 ? LEU A 148 ? SER A 146 LEU A 148 D 2 THR A 223 ? ASN A 228 ? THR A 223 ASN A 228 D 3 SER A 115 ? ASN A 119 ? SER A 115 ASN A 119 D 4 IYR A 243 ? THR A 246 ? IYR A 243 THR A 246 E 1 TYR A 168 ? TYI A 172 ? TYR A 168 TYI A 172 E 2 TYR A 177 ? GLY A 183 ? TYR A 177 GLY A 183 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 39 ? O GLU A 39 N ILE A 10 ? N ILE A 10 A 2 3 N TRP A 11 ? N TRP A 11 O PHE A 62 ? O PHE A 62 A 3 4 N ILE A 61 ? N ILE A 61 O GLY A 266 ? O GLY A 266 A 4 5 O GLY A 261 ? O GLY A 261 N GLU A 112 ? N GLU A 112 A 5 6 N VAL A 111 ? N VAL A 111 O ALA A 302 ? O ALA A 302 B 1 2 O GLU A 39 ? O GLU A 39 N ILE A 10 ? N ILE A 10 B 2 3 N TRP A 11 ? N TRP A 11 O PHE A 62 ? O PHE A 62 B 3 4 N ILE A 61 ? N ILE A 61 O GLY A 266 ? O GLY A 266 B 4 5 N VAL A 260 ? N VAL A 260 O GLU A 329 ? O GLU A 329 C 1 2 N IYR A 100 ? N IYR A 100 O LYS A 103 ? O LYS A 103 D 1 2 N SER A 146 ? N SER A 146 O ALA A 224 ? O ALA A 224 D 2 3 O THR A 226 ? O THR A 226 N ILE A 117 ? N ILE A 117 D 3 4 N LEU A 116 ? N LEU A 116 O THR A 246 ? O THR A 246 E 1 2 N LYS A 171 ? N LYS A 171 O ASP A 178 ? O ASP A 178 # _pdbx_entry_details.entry_id 4IKM _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 109 ? ? -125.73 -58.75 2 1 LEU A 122 ? ? -152.11 -20.69 3 1 LEU A 123 ? ? -151.78 85.48 4 1 ALA A 169 ? ? -77.96 -76.29 5 1 ALA A 173 ? ? -115.05 65.50 6 1 ASP A 210 ? ? -122.94 -161.97 7 1 ALA A 240 ? ? 57.93 6.07 8 1 VAL A 370 ? ? -114.13 70.37 # _pdbx_molecule_features.prd_id PRD_900001 _pdbx_molecule_features.name alpha-maltose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details oligosaccharide # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900001 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A IYR 100 A IYR 100 ? TYR 3-IODO-TYROSINE 2 A TYI 172 A TYI 172 ? TYR 3,5-DIIODOTYROSINE 3 A TYI 211 A TYI 211 ? TYR 3,5-DIIODOTYROSINE 4 A IYR 243 A IYR 243 ? TYR 3-IODO-TYROSINE 5 A TYI 308 A TYI 308 ? TYR 3,5-DIIODOTYROSINE 6 A TYI 342 A TYI 342 ? TYR 3,5-DIIODOTYROSINE 7 A TYI 448 A TYI 448 ? TYR 3,5-DIIODOTYROSINE 8 A IYR 452 A IYR 452 ? TYR 3-IODO-TYROSINE # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 3.3915 -54.1861 -0.7869 0.5570 0.6295 0.9253 -0.1394 0.2736 0.0302 2.8538 9.7868 5.5406 -4.0879 1.4802 0.0740 -0.1107 -0.0562 -1.1750 -0.8014 0.4890 -0.4247 0.7249 -0.2100 -0.2991 'X-RAY DIFFRACTION' 2 ? refined -0.6181 -32.6164 -3.8111 0.5223 0.6059 0.5155 -0.1290 0.1508 0.1409 3.2509 5.3941 2.8044 -0.8980 -0.2151 0.1123 -0.2167 0.6090 -0.0013 -0.7146 0.3009 -0.0615 -0.1726 -0.2153 -0.0813 'X-RAY DIFFRACTION' 3 ? refined -3.3901 -27.0186 3.0953 0.4260 0.5770 0.6639 0.0038 0.0943 0.1715 3.4275 5.9774 3.9627 -1.9999 1.2763 0.6829 -0.6122 0.1362 -0.0490 0.2632 0.3205 0.5543 0.3059 -0.4721 0.2812 'X-RAY DIFFRACTION' 4 ? refined -5.4126 -30.7957 28.1006 0.7837 0.6148 0.8813 0.1477 0.2124 0.0716 3.2551 5.4574 6.9699 -0.1134 1.5750 -5.6011 0.3380 -0.2455 0.8755 0.5682 -0.3100 -0.4824 -0.6356 -0.2489 0.0265 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 43 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 44 through 315 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 316 through 357 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 358 through 463 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 464 ? A HIS 464 2 1 Y 1 A HIS 465 ? A HIS 465 3 1 Y 1 A HIS 466 ? A HIS 466 4 1 Y 1 A HIS 467 ? A HIS 467 5 1 Y 1 A HIS 468 ? A HIS 468 6 1 Y 1 A HIS 469 ? A HIS 469 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 EDO C1 C N N 74 EDO O1 O N N 75 EDO C2 C N N 76 EDO O2 O N N 77 EDO H11 H N N 78 EDO H12 H N N 79 EDO HO1 H N N 80 EDO H21 H N N 81 EDO H22 H N N 82 EDO HO2 H N N 83 GLC C1 C N S 84 GLC C2 C N R 85 GLC C3 C N S 86 GLC C4 C N S 87 GLC C5 C N R 88 GLC C6 C N N 89 GLC O1 O N N 90 GLC O2 O N N 91 GLC O3 O N N 92 GLC O4 O N N 93 GLC O5 O N N 94 GLC O6 O N N 95 GLC H1 H N N 96 GLC H2 H N N 97 GLC H3 H N N 98 GLC H4 H N N 99 GLC H5 H N N 100 GLC H61 H N N 101 GLC H62 H N N 102 GLC HO1 H N N 103 GLC HO2 H N N 104 GLC HO3 H N N 105 GLC HO4 H N N 106 GLC HO6 H N N 107 GLN N N N N 108 GLN CA C N S 109 GLN C C N N 110 GLN O O N N 111 GLN CB C N N 112 GLN CG C N N 113 GLN CD C N N 114 GLN OE1 O N N 115 GLN NE2 N N N 116 GLN OXT O N N 117 GLN H H N N 118 GLN H2 H N N 119 GLN HA H N N 120 GLN HB2 H N N 121 GLN HB3 H N N 122 GLN HG2 H N N 123 GLN HG3 H N N 124 GLN HE21 H N N 125 GLN HE22 H N N 126 GLN HXT H N N 127 GLU N N N N 128 GLU CA C N S 129 GLU C C N N 130 GLU O O N N 131 GLU CB C N N 132 GLU CG C N N 133 GLU CD C N N 134 GLU OE1 O N N 135 GLU OE2 O N N 136 GLU OXT O N N 137 GLU H H N N 138 GLU H2 H N N 139 GLU HA H N N 140 GLU HB2 H N N 141 GLU HB3 H N N 142 GLU HG2 H N N 143 GLU HG3 H N N 144 GLU HE2 H N N 145 GLU HXT H N N 146 GLY N N N N 147 GLY CA C N N 148 GLY C C N N 149 GLY O O N N 150 GLY OXT O N N 151 GLY H H N N 152 GLY H2 H N N 153 GLY HA2 H N N 154 GLY HA3 H N N 155 GLY HXT H N N 156 HIS N N N N 157 HIS CA C N S 158 HIS C C N N 159 HIS O O N N 160 HIS CB C N N 161 HIS CG C Y N 162 HIS ND1 N Y N 163 HIS CD2 C Y N 164 HIS CE1 C Y N 165 HIS NE2 N Y N 166 HIS OXT O N N 167 HIS H H N N 168 HIS H2 H N N 169 HIS HA H N N 170 HIS HB2 H N N 171 HIS HB3 H N N 172 HIS HD1 H N N 173 HIS HD2 H N N 174 HIS HE1 H N N 175 HIS HE2 H N N 176 HIS HXT H N N 177 HOH O O N N 178 HOH H1 H N N 179 HOH H2 H N N 180 ILE N N N N 181 ILE CA C N S 182 ILE C C N N 183 ILE O O N N 184 ILE CB C N S 185 ILE CG1 C N N 186 ILE CG2 C N N 187 ILE CD1 C N N 188 ILE OXT O N N 189 ILE H H N N 190 ILE H2 H N N 191 ILE HA H N N 192 ILE HB H N N 193 ILE HG12 H N N 194 ILE HG13 H N N 195 ILE HG21 H N N 196 ILE HG22 H N N 197 ILE HG23 H N N 198 ILE HD11 H N N 199 ILE HD12 H N N 200 ILE HD13 H N N 201 ILE HXT H N N 202 IOD I I N N 203 IYR N N N N 204 IYR CA C N S 205 IYR CB C N N 206 IYR CC C Y N 207 IYR CD C Y N 208 IYR CE C Y N 209 IYR IE I N N 210 IYR CF C Y N 211 IYR OF O N N 212 IYR CG C Y N 213 IYR CH C Y N 214 IYR C C N N 215 IYR O O N N 216 IYR OXT O N N 217 IYR H H N N 218 IYR H2 H N N 219 IYR HA H N N 220 IYR HB2 H N N 221 IYR HB3 H N N 222 IYR HD H N N 223 IYR HF H N N 224 IYR HG H N N 225 IYR HH H N N 226 IYR HXT H N N 227 LEU N N N N 228 LEU CA C N S 229 LEU C C N N 230 LEU O O N N 231 LEU CB C N N 232 LEU CG C N N 233 LEU CD1 C N N 234 LEU CD2 C N N 235 LEU OXT O N N 236 LEU H H N N 237 LEU H2 H N N 238 LEU HA H N N 239 LEU HB2 H N N 240 LEU HB3 H N N 241 LEU HG H N N 242 LEU HD11 H N N 243 LEU HD12 H N N 244 LEU HD13 H N N 245 LEU HD21 H N N 246 LEU HD22 H N N 247 LEU HD23 H N N 248 LEU HXT H N N 249 LYS N N N N 250 LYS CA C N S 251 LYS C C N N 252 LYS O O N N 253 LYS CB C N N 254 LYS CG C N N 255 LYS CD C N N 256 LYS CE C N N 257 LYS NZ N N N 258 LYS OXT O N N 259 LYS H H N N 260 LYS H2 H N N 261 LYS HA H N N 262 LYS HB2 H N N 263 LYS HB3 H N N 264 LYS HG2 H N N 265 LYS HG3 H N N 266 LYS HD2 H N N 267 LYS HD3 H N N 268 LYS HE2 H N N 269 LYS HE3 H N N 270 LYS HZ1 H N N 271 LYS HZ2 H N N 272 LYS HZ3 H N N 273 LYS HXT H N N 274 MET N N N N 275 MET CA C N S 276 MET C C N N 277 MET O O N N 278 MET CB C N N 279 MET CG C N N 280 MET SD S N N 281 MET CE C N N 282 MET OXT O N N 283 MET H H N N 284 MET H2 H N N 285 MET HA H N N 286 MET HB2 H N N 287 MET HB3 H N N 288 MET HG2 H N N 289 MET HG3 H N N 290 MET HE1 H N N 291 MET HE2 H N N 292 MET HE3 H N N 293 MET HXT H N N 294 PHE N N N N 295 PHE CA C N S 296 PHE C C N N 297 PHE O O N N 298 PHE CB C N N 299 PHE CG C Y N 300 PHE CD1 C Y N 301 PHE CD2 C Y N 302 PHE CE1 C Y N 303 PHE CE2 C Y N 304 PHE CZ C Y N 305 PHE OXT O N N 306 PHE H H N N 307 PHE H2 H N N 308 PHE HA H N N 309 PHE HB2 H N N 310 PHE HB3 H N N 311 PHE HD1 H N N 312 PHE HD2 H N N 313 PHE HE1 H N N 314 PHE HE2 H N N 315 PHE HZ H N N 316 PHE HXT H N N 317 PRO N N N N 318 PRO CA C N S 319 PRO C C N N 320 PRO O O N N 321 PRO CB C N N 322 PRO CG C N N 323 PRO CD C N N 324 PRO OXT O N N 325 PRO H H N N 326 PRO HA H N N 327 PRO HB2 H N N 328 PRO HB3 H N N 329 PRO HG2 H N N 330 PRO HG3 H N N 331 PRO HD2 H N N 332 PRO HD3 H N N 333 PRO HXT H N N 334 SER N N N N 335 SER CA C N S 336 SER C C N N 337 SER O O N N 338 SER CB C N N 339 SER OG O N N 340 SER OXT O N N 341 SER H H N N 342 SER H2 H N N 343 SER HA H N N 344 SER HB2 H N N 345 SER HB3 H N N 346 SER HG H N N 347 SER HXT H N N 348 THR N N N N 349 THR CA C N S 350 THR C C N N 351 THR O O N N 352 THR CB C N R 353 THR OG1 O N N 354 THR CG2 C N N 355 THR OXT O N N 356 THR H H N N 357 THR H2 H N N 358 THR HA H N N 359 THR HB H N N 360 THR HG1 H N N 361 THR HG21 H N N 362 THR HG22 H N N 363 THR HG23 H N N 364 THR HXT H N N 365 TRP N N N N 366 TRP CA C N S 367 TRP C C N N 368 TRP O O N N 369 TRP CB C N N 370 TRP CG C Y N 371 TRP CD1 C Y N 372 TRP CD2 C Y N 373 TRP NE1 N Y N 374 TRP CE2 C Y N 375 TRP CE3 C Y N 376 TRP CZ2 C Y N 377 TRP CZ3 C Y N 378 TRP CH2 C Y N 379 TRP OXT O N N 380 TRP H H N N 381 TRP H2 H N N 382 TRP HA H N N 383 TRP HB2 H N N 384 TRP HB3 H N N 385 TRP HD1 H N N 386 TRP HE1 H N N 387 TRP HE3 H N N 388 TRP HZ2 H N N 389 TRP HZ3 H N N 390 TRP HH2 H N N 391 TRP HXT H N N 392 TYI N N N N 393 TYI CA C N S 394 TYI CB C N N 395 TYI CG C Y N 396 TYI CD1 C Y N 397 TYI CE1 C Y N 398 TYI CD2 C Y N 399 TYI CE2 C Y N 400 TYI CZ C Y N 401 TYI OH O N N 402 TYI C C N N 403 TYI O O N N 404 TYI OXT O N N 405 TYI I1 I N N 406 TYI I2 I N N 407 TYI H H N N 408 TYI H2 H N N 409 TYI HA H N N 410 TYI HB2 H N N 411 TYI HB3 H N N 412 TYI HD1 H N N 413 TYI HD2 H N N 414 TYI HH H N N 415 TYI HXT H N N 416 TYR N N N N 417 TYR CA C N S 418 TYR C C N N 419 TYR O O N N 420 TYR CB C N N 421 TYR CG C Y N 422 TYR CD1 C Y N 423 TYR CD2 C Y N 424 TYR CE1 C Y N 425 TYR CE2 C Y N 426 TYR CZ C Y N 427 TYR OH O N N 428 TYR OXT O N N 429 TYR H H N N 430 TYR H2 H N N 431 TYR HA H N N 432 TYR HB2 H N N 433 TYR HB3 H N N 434 TYR HD1 H N N 435 TYR HD2 H N N 436 TYR HE1 H N N 437 TYR HE2 H N N 438 TYR HH H N N 439 TYR HXT H N N 440 VAL N N N N 441 VAL CA C N S 442 VAL C C N N 443 VAL O O N N 444 VAL CB C N N 445 VAL CG1 C N N 446 VAL CG2 C N N 447 VAL OXT O N N 448 VAL H H N N 449 VAL H2 H N N 450 VAL HA H N N 451 VAL HB H N N 452 VAL HG11 H N N 453 VAL HG12 H N N 454 VAL HG13 H N N 455 VAL HG21 H N N 456 VAL HG22 H N N 457 VAL HG23 H N N 458 VAL HXT H N N 459 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 EDO C1 O1 sing N N 70 EDO C1 C2 sing N N 71 EDO C1 H11 sing N N 72 EDO C1 H12 sing N N 73 EDO O1 HO1 sing N N 74 EDO C2 O2 sing N N 75 EDO C2 H21 sing N N 76 EDO C2 H22 sing N N 77 EDO O2 HO2 sing N N 78 GLC C1 C2 sing N N 79 GLC C1 O1 sing N N 80 GLC C1 O5 sing N N 81 GLC C1 H1 sing N N 82 GLC C2 C3 sing N N 83 GLC C2 O2 sing N N 84 GLC C2 H2 sing N N 85 GLC C3 C4 sing N N 86 GLC C3 O3 sing N N 87 GLC C3 H3 sing N N 88 GLC C4 C5 sing N N 89 GLC C4 O4 sing N N 90 GLC C4 H4 sing N N 91 GLC C5 C6 sing N N 92 GLC C5 O5 sing N N 93 GLC C5 H5 sing N N 94 GLC C6 O6 sing N N 95 GLC C6 H61 sing N N 96 GLC C6 H62 sing N N 97 GLC O1 HO1 sing N N 98 GLC O2 HO2 sing N N 99 GLC O3 HO3 sing N N 100 GLC O4 HO4 sing N N 101 GLC O6 HO6 sing N N 102 GLN N CA sing N N 103 GLN N H sing N N 104 GLN N H2 sing N N 105 GLN CA C sing N N 106 GLN CA CB sing N N 107 GLN CA HA sing N N 108 GLN C O doub N N 109 GLN C OXT sing N N 110 GLN CB CG sing N N 111 GLN CB HB2 sing N N 112 GLN CB HB3 sing N N 113 GLN CG CD sing N N 114 GLN CG HG2 sing N N 115 GLN CG HG3 sing N N 116 GLN CD OE1 doub N N 117 GLN CD NE2 sing N N 118 GLN NE2 HE21 sing N N 119 GLN NE2 HE22 sing N N 120 GLN OXT HXT sing N N 121 GLU N CA sing N N 122 GLU N H sing N N 123 GLU N H2 sing N N 124 GLU CA C sing N N 125 GLU CA CB sing N N 126 GLU CA HA sing N N 127 GLU C O doub N N 128 GLU C OXT sing N N 129 GLU CB CG sing N N 130 GLU CB HB2 sing N N 131 GLU CB HB3 sing N N 132 GLU CG CD sing N N 133 GLU CG HG2 sing N N 134 GLU CG HG3 sing N N 135 GLU CD OE1 doub N N 136 GLU CD OE2 sing N N 137 GLU OE2 HE2 sing N N 138 GLU OXT HXT sing N N 139 GLY N CA sing N N 140 GLY N H sing N N 141 GLY N H2 sing N N 142 GLY CA C sing N N 143 GLY CA HA2 sing N N 144 GLY CA HA3 sing N N 145 GLY C O doub N N 146 GLY C OXT sing N N 147 GLY OXT HXT sing N N 148 HIS N CA sing N N 149 HIS N H sing N N 150 HIS N H2 sing N N 151 HIS CA C sing N N 152 HIS CA CB sing N N 153 HIS CA HA sing N N 154 HIS C O doub N N 155 HIS C OXT sing N N 156 HIS CB CG sing N N 157 HIS CB HB2 sing N N 158 HIS CB HB3 sing N N 159 HIS CG ND1 sing Y N 160 HIS CG CD2 doub Y N 161 HIS ND1 CE1 doub Y N 162 HIS ND1 HD1 sing N N 163 HIS CD2 NE2 sing Y N 164 HIS CD2 HD2 sing N N 165 HIS CE1 NE2 sing Y N 166 HIS CE1 HE1 sing N N 167 HIS NE2 HE2 sing N N 168 HIS OXT HXT sing N N 169 HOH O H1 sing N N 170 HOH O H2 sing N N 171 ILE N CA sing N N 172 ILE N H sing N N 173 ILE N H2 sing N N 174 ILE CA C sing N N 175 ILE CA CB sing N N 176 ILE CA HA sing N N 177 ILE C O doub N N 178 ILE C OXT sing N N 179 ILE CB CG1 sing N N 180 ILE CB CG2 sing N N 181 ILE CB HB sing N N 182 ILE CG1 CD1 sing N N 183 ILE CG1 HG12 sing N N 184 ILE CG1 HG13 sing N N 185 ILE CG2 HG21 sing N N 186 ILE CG2 HG22 sing N N 187 ILE CG2 HG23 sing N N 188 ILE CD1 HD11 sing N N 189 ILE CD1 HD12 sing N N 190 ILE CD1 HD13 sing N N 191 ILE OXT HXT sing N N 192 IYR N CA sing N N 193 IYR N H sing N N 194 IYR N H2 sing N N 195 IYR CA CB sing N N 196 IYR CA C sing N N 197 IYR CA HA sing N N 198 IYR CB CC sing N N 199 IYR CB HB2 sing N N 200 IYR CB HB3 sing N N 201 IYR CC CD doub Y N 202 IYR CC CH sing Y N 203 IYR CD CE sing Y N 204 IYR CD HD sing N N 205 IYR CE IE sing N N 206 IYR CE CF doub Y N 207 IYR CF OF sing N N 208 IYR CF CG sing Y N 209 IYR OF HF sing N N 210 IYR CG CH doub Y N 211 IYR CG HG sing N N 212 IYR CH HH sing N N 213 IYR C O doub N N 214 IYR C OXT sing N N 215 IYR OXT HXT sing N N 216 LEU N CA sing N N 217 LEU N H sing N N 218 LEU N H2 sing N N 219 LEU CA C sing N N 220 LEU CA CB sing N N 221 LEU CA HA sing N N 222 LEU C O doub N N 223 LEU C OXT sing N N 224 LEU CB CG sing N N 225 LEU CB HB2 sing N N 226 LEU CB HB3 sing N N 227 LEU CG CD1 sing N N 228 LEU CG CD2 sing N N 229 LEU CG HG sing N N 230 LEU CD1 HD11 sing N N 231 LEU CD1 HD12 sing N N 232 LEU CD1 HD13 sing N N 233 LEU CD2 HD21 sing N N 234 LEU CD2 HD22 sing N N 235 LEU CD2 HD23 sing N N 236 LEU OXT HXT sing N N 237 LYS N CA sing N N 238 LYS N H sing N N 239 LYS N H2 sing N N 240 LYS CA C sing N N 241 LYS CA CB sing N N 242 LYS CA HA sing N N 243 LYS C O doub N N 244 LYS C OXT sing N N 245 LYS CB CG sing N N 246 LYS CB HB2 sing N N 247 LYS CB HB3 sing N N 248 LYS CG CD sing N N 249 LYS CG HG2 sing N N 250 LYS CG HG3 sing N N 251 LYS CD CE sing N N 252 LYS CD HD2 sing N N 253 LYS CD HD3 sing N N 254 LYS CE NZ sing N N 255 LYS CE HE2 sing N N 256 LYS CE HE3 sing N N 257 LYS NZ HZ1 sing N N 258 LYS NZ HZ2 sing N N 259 LYS NZ HZ3 sing N N 260 LYS OXT HXT sing N N 261 MET N CA sing N N 262 MET N H sing N N 263 MET N H2 sing N N 264 MET CA C sing N N 265 MET CA CB sing N N 266 MET CA HA sing N N 267 MET C O doub N N 268 MET C OXT sing N N 269 MET CB CG sing N N 270 MET CB HB2 sing N N 271 MET CB HB3 sing N N 272 MET CG SD sing N N 273 MET CG HG2 sing N N 274 MET CG HG3 sing N N 275 MET SD CE sing N N 276 MET CE HE1 sing N N 277 MET CE HE2 sing N N 278 MET CE HE3 sing N N 279 MET OXT HXT sing N N 280 PHE N CA sing N N 281 PHE N H sing N N 282 PHE N H2 sing N N 283 PHE CA C sing N N 284 PHE CA CB sing N N 285 PHE CA HA sing N N 286 PHE C O doub N N 287 PHE C OXT sing N N 288 PHE CB CG sing N N 289 PHE CB HB2 sing N N 290 PHE CB HB3 sing N N 291 PHE CG CD1 doub Y N 292 PHE CG CD2 sing Y N 293 PHE CD1 CE1 sing Y N 294 PHE CD1 HD1 sing N N 295 PHE CD2 CE2 doub Y N 296 PHE CD2 HD2 sing N N 297 PHE CE1 CZ doub Y N 298 PHE CE1 HE1 sing N N 299 PHE CE2 CZ sing Y N 300 PHE CE2 HE2 sing N N 301 PHE CZ HZ sing N N 302 PHE OXT HXT sing N N 303 PRO N CA sing N N 304 PRO N CD sing N N 305 PRO N H sing N N 306 PRO CA C sing N N 307 PRO CA CB sing N N 308 PRO CA HA sing N N 309 PRO C O doub N N 310 PRO C OXT sing N N 311 PRO CB CG sing N N 312 PRO CB HB2 sing N N 313 PRO CB HB3 sing N N 314 PRO CG CD sing N N 315 PRO CG HG2 sing N N 316 PRO CG HG3 sing N N 317 PRO CD HD2 sing N N 318 PRO CD HD3 sing N N 319 PRO OXT HXT sing N N 320 SER N CA sing N N 321 SER N H sing N N 322 SER N H2 sing N N 323 SER CA C sing N N 324 SER CA CB sing N N 325 SER CA HA sing N N 326 SER C O doub N N 327 SER C OXT sing N N 328 SER CB OG sing N N 329 SER CB HB2 sing N N 330 SER CB HB3 sing N N 331 SER OG HG sing N N 332 SER OXT HXT sing N N 333 THR N CA sing N N 334 THR N H sing N N 335 THR N H2 sing N N 336 THR CA C sing N N 337 THR CA CB sing N N 338 THR CA HA sing N N 339 THR C O doub N N 340 THR C OXT sing N N 341 THR CB OG1 sing N N 342 THR CB CG2 sing N N 343 THR CB HB sing N N 344 THR OG1 HG1 sing N N 345 THR CG2 HG21 sing N N 346 THR CG2 HG22 sing N N 347 THR CG2 HG23 sing N N 348 THR OXT HXT sing N N 349 TRP N CA sing N N 350 TRP N H sing N N 351 TRP N H2 sing N N 352 TRP CA C sing N N 353 TRP CA CB sing N N 354 TRP CA HA sing N N 355 TRP C O doub N N 356 TRP C OXT sing N N 357 TRP CB CG sing N N 358 TRP CB HB2 sing N N 359 TRP CB HB3 sing N N 360 TRP CG CD1 doub Y N 361 TRP CG CD2 sing Y N 362 TRP CD1 NE1 sing Y N 363 TRP CD1 HD1 sing N N 364 TRP CD2 CE2 doub Y N 365 TRP CD2 CE3 sing Y N 366 TRP NE1 CE2 sing Y N 367 TRP NE1 HE1 sing N N 368 TRP CE2 CZ2 sing Y N 369 TRP CE3 CZ3 doub Y N 370 TRP CE3 HE3 sing N N 371 TRP CZ2 CH2 doub Y N 372 TRP CZ2 HZ2 sing N N 373 TRP CZ3 CH2 sing Y N 374 TRP CZ3 HZ3 sing N N 375 TRP CH2 HH2 sing N N 376 TRP OXT HXT sing N N 377 TYI N CA sing N N 378 TYI N H sing N N 379 TYI N H2 sing N N 380 TYI CA CB sing N N 381 TYI CA C sing N N 382 TYI CA HA sing N N 383 TYI CB CG sing N N 384 TYI CB HB2 sing N N 385 TYI CB HB3 sing N N 386 TYI CG CD1 doub Y N 387 TYI CG CD2 sing Y N 388 TYI CD1 CE1 sing Y N 389 TYI CD1 HD1 sing N N 390 TYI CE1 CZ doub Y N 391 TYI CE1 I1 sing N N 392 TYI CD2 CE2 doub Y N 393 TYI CD2 HD2 sing N N 394 TYI CE2 CZ sing Y N 395 TYI CE2 I2 sing N N 396 TYI CZ OH sing N N 397 TYI OH HH sing N N 398 TYI C O doub N N 399 TYI C OXT sing N N 400 TYI OXT HXT sing N N 401 TYR N CA sing N N 402 TYR N H sing N N 403 TYR N H2 sing N N 404 TYR CA C sing N N 405 TYR CA CB sing N N 406 TYR CA HA sing N N 407 TYR C O doub N N 408 TYR C OXT sing N N 409 TYR CB CG sing N N 410 TYR CB HB2 sing N N 411 TYR CB HB3 sing N N 412 TYR CG CD1 doub Y N 413 TYR CG CD2 sing Y N 414 TYR CD1 CE1 sing Y N 415 TYR CD1 HD1 sing N N 416 TYR CD2 CE2 doub Y N 417 TYR CD2 HD2 sing N N 418 TYR CE1 CZ doub Y N 419 TYR CE1 HE1 sing N N 420 TYR CE2 CZ sing Y N 421 TYR CE2 HE2 sing N N 422 TYR CZ OH sing N N 423 TYR OH HH sing N N 424 TYR OXT HXT sing N N 425 VAL N CA sing N N 426 VAL N H sing N N 427 VAL N H2 sing N N 428 VAL CA C sing N N 429 VAL CA CB sing N N 430 VAL CA HA sing N N 431 VAL C O doub N N 432 VAL C OXT sing N N 433 VAL CB CG1 sing N N 434 VAL CB CG2 sing N N 435 VAL CB HB sing N N 436 VAL CG1 HG11 sing N N 437 VAL CG1 HG12 sing N N 438 VAL CG1 HG13 sing N N 439 VAL CG2 HG21 sing N N 440 VAL CG2 HG22 sing N N 441 VAL CG2 HG23 sing N N 442 VAL OXT HXT sing N N 443 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 GLC 2 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3VD8 _pdbx_initial_refinement_model.details 'PDB ENTRY 3VD8' # _atom_sites.entry_id 4IKM _atom_sites.fract_transf_matrix[1][1] 0.010540 _atom_sites.fract_transf_matrix[1][2] 0.006085 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012171 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004558 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_