HEADER TRANSPORT PROTEIN 28-DEC-12 4IKW TITLE CRYSTAL STRUCTURE OF PEPTIDE TRANSPORTER POT IN COMPLEX WITH SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DI-TRIPEPTIDE ABC TRANSPORTER (PERMEASE); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 1462; SOURCE 4 STRAIN: BD53; SOURCE 5 GENE: GK2020; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3)DELTA-ACRB; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCGFP-BC KEYWDS MAJOR FACILITATOR SUPERFAMILY, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.DOKI,H.E.KATO,R.ISHITANI,O.NUREKI REVDAT 3 29-MAY-24 4IKW 1 REMARK REVDAT 2 24-AUG-22 4IKW 1 JRNL REMARK REVDAT 1 10-JUL-13 4IKW 0 JRNL AUTH S.DOKI,H.E.KATO,N.SOLCAN,M.IWAKI,M.KOYAMA,M.HATTORI,N.IWASE, JRNL AUTH 2 T.TSUKAZAKI,Y.SUGITA,H.KANDORI,S.NEWSTEAD,R.ISHITANI, JRNL AUTH 3 O.NUREKI JRNL TITL STRUCTURAL BASIS FOR DYNAMIC MECHANISM OF PROTON-COUPLED JRNL TITL 2 SYMPORT BY THE PEPTIDE TRANSPORTER POT. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 11343 2013 JRNL REFN ESSN 1091-6490 JRNL PMID 23798427 JRNL DOI 10.1073/PNAS.1301079110 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.510 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 33030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1280 - 4.5860 0.99 2771 141 0.1964 0.2177 REMARK 3 2 4.5860 - 3.6405 1.00 2734 142 0.1720 0.1930 REMARK 3 3 3.6405 - 3.1805 0.99 2707 141 0.1720 0.2067 REMARK 3 4 3.1805 - 2.8897 0.99 2686 138 0.1765 0.2216 REMARK 3 5 2.8897 - 2.6826 0.98 2690 134 0.1796 0.2306 REMARK 3 6 2.6826 - 2.5245 0.98 2655 148 0.1841 0.2468 REMARK 3 7 2.5245 - 2.3981 0.97 2629 134 0.1906 0.2606 REMARK 3 8 2.3981 - 2.2937 0.95 2581 139 0.2114 0.2544 REMARK 3 9 2.2937 - 2.2054 0.95 2600 143 0.2336 0.2549 REMARK 3 10 2.2054 - 2.1293 0.93 2526 131 0.2445 0.3199 REMARK 3 11 2.1293 - 2.0627 0.90 2465 134 0.2749 0.2888 REMARK 3 12 2.0627 - 2.0037 0.86 2340 121 0.2899 0.3242 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 70.72 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.47110 REMARK 3 B22 (A**2) : 0.53780 REMARK 3 B33 (A**2) : -10.00890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.16090 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3995 REMARK 3 ANGLE : 1.019 5390 REMARK 3 CHIRALITY : 0.070 610 REMARK 3 PLANARITY : 0.004 644 REMARK 3 DIHEDRAL : 15.785 1424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 3:51) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7710 26.5051 10.2667 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.2166 REMARK 3 T33: 0.2009 T12: 0.0244 REMARK 3 T13: 0.0436 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.4595 L22: 0.8306 REMARK 3 L33: 0.1631 L12: 0.0595 REMARK 3 L13: 0.2613 L23: 0.0753 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.2256 S13: 0.1449 REMARK 3 S21: 0.1420 S22: 0.1266 S23: 0.0466 REMARK 3 S31: 0.1791 S32: 0.1315 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 52:90) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5455 20.1110 -4.0789 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.1623 REMARK 3 T33: 0.2102 T12: 0.0254 REMARK 3 T13: 0.0163 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.5803 L22: 0.9033 REMARK 3 L33: 0.1435 L12: 0.4094 REMARK 3 L13: -0.2103 L23: 0.0613 REMARK 3 S TENSOR REMARK 3 S11: -0.1891 S12: -0.0484 S13: -0.0030 REMARK 3 S21: -0.1130 S22: 0.0178 S23: -0.0666 REMARK 3 S31: -0.2507 S32: 0.1319 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 91:146) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1950 29.8499 4.6798 REMARK 3 T TENSOR REMARK 3 T11: 0.2119 T22: 0.1497 REMARK 3 T33: 0.2342 T12: 0.0018 REMARK 3 T13: 0.0122 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.1312 L22: 0.7427 REMARK 3 L33: 0.3516 L12: -0.0354 REMARK 3 L13: 0.5113 L23: -0.3198 REMARK 3 S TENSOR REMARK 3 S11: -0.0807 S12: -0.1907 S13: 0.0333 REMARK 3 S21: 0.0370 S22: 0.0248 S23: -0.1865 REMARK 3 S31: -0.1040 S32: -0.1551 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 147:211) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6057 26.3579 6.7071 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.1883 REMARK 3 T33: 0.1722 T12: 0.0130 REMARK 3 T13: 0.0307 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.4199 L22: 0.6312 REMARK 3 L33: 0.2157 L12: -0.3578 REMARK 3 L13: -0.5023 L23: -0.0193 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.2200 S13: 0.1155 REMARK 3 S21: 0.0738 S22: 0.0516 S23: 0.0665 REMARK 3 S31: -0.1986 S32: -0.0169 S33: -0.0010 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 212:250) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5997 30.4693 10.9793 REMARK 3 T TENSOR REMARK 3 T11: 0.3115 T22: 0.4017 REMARK 3 T33: 0.4012 T12: -0.0699 REMARK 3 T13: -0.0799 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.3452 L22: 0.5992 REMARK 3 L33: 0.0538 L12: 0.2079 REMARK 3 L13: 0.0820 L23: 0.1865 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: 0.1274 S13: -0.0636 REMARK 3 S21: 0.2076 S22: -0.1758 S23: -0.2644 REMARK 3 S31: 0.0863 S32: -0.1038 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 251:280) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1503 11.9966 2.8413 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.4880 REMARK 3 T33: 0.2350 T12: -0.1506 REMARK 3 T13: -0.0747 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.3387 L22: 1.1121 REMARK 3 L33: 0.0846 L12: -0.3759 REMARK 3 L13: -0.1528 L23: 0.2779 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: 0.1405 S13: 0.0529 REMARK 3 S21: -0.2670 S22: 0.1366 S23: -0.2100 REMARK 3 S31: -0.0355 S32: 0.5172 S33: 0.1205 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 281:313) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4929 3.4957 12.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.1563 T22: 0.1732 REMARK 3 T33: 0.1912 T12: 0.0155 REMARK 3 T13: -0.0480 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.3700 L22: 0.3945 REMARK 3 L33: 0.2281 L12: 0.3883 REMARK 3 L13: 0.1871 L23: 0.1678 REMARK 3 S TENSOR REMARK 3 S11: 0.0997 S12: -0.0559 S13: 0.0597 REMARK 3 S21: 0.1676 S22: -0.0896 S23: -0.0615 REMARK 3 S31: 0.2759 S32: -0.0160 S33: -0.0232 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 314:427) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5123 3.7280 -0.3624 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.1505 REMARK 3 T33: 0.1647 T12: 0.0114 REMARK 3 T13: -0.0066 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.0699 L22: 1.8576 REMARK 3 L33: 0.5800 L12: -0.3404 REMARK 3 L13: -0.0684 L23: -0.5802 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: 0.0353 S13: -0.1606 REMARK 3 S21: -0.0402 S22: 0.0324 S23: 0.2093 REMARK 3 S31: 0.0422 S32: -0.2135 S33: 0.0013 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 428:462) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5050 8.8793 3.4588 REMARK 3 T TENSOR REMARK 3 T11: 0.1730 T22: 0.1633 REMARK 3 T33: 0.1791 T12: -0.0084 REMARK 3 T13: -0.0203 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.5229 L22: 0.8303 REMARK 3 L33: 0.2557 L12: -0.3933 REMARK 3 L13: 0.1239 L23: -0.4420 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: 0.0036 S13: -0.0229 REMARK 3 S21: 0.0393 S22: -0.0315 S23: -0.2151 REMARK 3 S31: -0.1472 S32: -0.0511 S33: -0.0004 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 463:494) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9228 -5.5669 6.0519 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.1480 REMARK 3 T33: 0.1805 T12: 0.0108 REMARK 3 T13: -0.0333 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.8288 L22: 0.7848 REMARK 3 L33: 0.1611 L12: -0.2104 REMARK 3 L13: -0.3674 L23: 0.0852 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: -0.1966 S13: -0.1549 REMARK 3 S21: 0.1693 S22: -0.0578 S23: -0.0092 REMARK 3 S31: -0.0643 S32: -0.1934 S33: -0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97944 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33050 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 38% PEG 400, 300MM LI2SO4, 30MM SRCL2, REMARK 280 PH 7.0, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.86600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 495 REMARK 465 ARG A 496 REMARK 465 LEU A 497 REMARK 465 GLU A 498 REMARK 465 SER A 499 REMARK 465 SER A 500 REMARK 465 GLY A 501 REMARK 465 GLU A 502 REMARK 465 ASN A 503 REMARK 465 LEU A 504 REMARK 465 TYR A 505 REMARK 465 PHE A 506 REMARK 465 GLN A 507 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 2 N CA CB REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 229 CD CE NZ REMARK 470 ILE A 249 CG1 CG2 CD1 REMARK 470 ASN A 251 CG OD1 ND2 REMARK 470 TRP A 253 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 253 CZ3 CH2 REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 ARG A 456 CZ NH1 NH2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 LYS A 493 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 145 O HOH A 830 2.11 REMARK 500 NH1 ARG A 16 O3 SO4 A 602 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 91 -37.89 -135.79 REMARK 500 VAL A 175 -67.68 -98.11 REMARK 500 THR A 314 -88.34 -119.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 608 REMARK 610 OLA A 609 REMARK 610 OLA A 610 REMARK 610 OLA A 612 REMARK 610 OLA A 613 REMARK 610 OLA A 614 REMARK 610 OLA A 615 REMARK 610 OLA A 616 REMARK 610 OLC A 617 REMARK 610 OLC A 618 REMARK 610 OLC A 619 REMARK 610 OLC A 620 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 618 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 619 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 620 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IKV RELATED DB: PDB REMARK 900 RELATED ID: 4IKX RELATED DB: PDB REMARK 900 RELATED ID: 4IKY RELATED DB: PDB REMARK 900 RELATED ID: 4IKZ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE PROTEIN WAS ISOLATED FROM STRAIN BD53 OF REMARK 999 GEOBACILLUS SPECIES WHOSE SEQUENCE IS NOT AVAILABLE IN THE UNIPROT REMARK 999 DATABASE. THE SEQUENCE CONSTRUCT IS THE SAME AS Q5KYD1_GEOKA. C- REMARK 999 TERMINAL RESIDUES LESSGENLYFQ ARE EXPRESSION TAGS. DBREF 4IKW A 1 507 PDB 4IKW 4IKW 1 507 SEQRES 1 A 507 MET ALA SER ILE ASP LYS GLN GLN ILE ALA ALA SER VAL SEQRES 2 A 507 PRO GLN ARG GLY PHE PHE GLY HIS PRO LYS GLY LEU PHE SEQRES 3 A 507 THR LEU PHE PHE THR GLU PHE TRP GLU ARG PHE SER TYR SEQRES 4 A 507 TYR GLY MET ARG ALA ILE LEU VAL TYR TYR MET TYR TYR SEQRES 5 A 507 GLU VAL SER LYS GLY GLY LEU GLY LEU ASP GLU HIS LEU SEQRES 6 A 507 ALA LEU ALA ILE MET SER ILE TYR GLY ALA LEU VAL TYR SEQRES 7 A 507 MET SER GLY ILE ILE GLY GLY TRP LEU ALA ASP ARG VAL SEQRES 8 A 507 PHE GLY THR SER ARG ALA VAL PHE TYR GLY GLY LEU LEU SEQRES 9 A 507 ILE MET ALA GLY HIS ILE ALA LEU ALA ILE PRO GLY GLY SEQRES 10 A 507 VAL ALA ALA LEU PHE VAL SER MET ALA LEU ILE VAL LEU SEQRES 11 A 507 GLY THR GLY LEU LEU LYS PRO ASN VAL SER SER ILE VAL SEQRES 12 A 507 GLY ASP MET TYR LYS PRO GLY ASP ASP ARG ARG ASP ALA SEQRES 13 A 507 GLY PHE SER ILE PHE TYR MET GLY ILE ASN LEU GLY ALA SEQRES 14 A 507 PHE LEU ALA PRO LEU VAL VAL GLY THR ALA GLY MET LYS SEQRES 15 A 507 TYR ASN PHE HIS LEU GLY PHE GLY LEU ALA ALA VAL GLY SEQRES 16 A 507 MET PHE LEU GLY LEU VAL VAL PHE VAL ALA THR ARG LYS SEQRES 17 A 507 LYS ASN LEU GLY LEU ALA GLY THR TYR VAL PRO ASN PRO SEQRES 18 A 507 LEU THR PRO ALA GLU LYS LYS LYS ALA ALA ALA ILE MET SEQRES 19 A 507 ALA VAL GLY ALA VAL VAL ILE ALA VAL LEU LEU ALA ILE SEQRES 20 A 507 LEU ILE PRO ASN GLY TRP PHE THR VAL GLU THR PHE ILE SEQRES 21 A 507 SER LEU VAL GLY ILE LEU GLY ILE ILE ILE PRO ILE ILE SEQRES 22 A 507 TYR PHE VAL VAL MET TYR ARG SER PRO LYS THR THR ALA SEQRES 23 A 507 GLU GLU ARG SER ARG VAL ILE ALA TYR ILE PRO LEU PHE SEQRES 24 A 507 VAL ALA SER ALA MET PHE TRP ALA ILE GLN GLU GLN GLY SEQRES 25 A 507 SER THR ILE LEU ALA ASN TYR ALA ASP LYS ARG THR GLN SEQRES 26 A 507 LEU ASP VAL ALA GLY ILE HIS LEU SER PRO ALA TRP PHE SEQRES 27 A 507 GLN SER LEU ASN PRO LEU PHE ILE ILE ILE LEU ALA PRO SEQRES 28 A 507 VAL PHE ALA TRP MET TRP VAL LYS LEU GLY LYS ARG GLN SEQRES 29 A 507 PRO THR ILE PRO GLN LYS PHE ALA LEU GLY LEU LEU PHE SEQRES 30 A 507 ALA GLY LEU SER PHE ILE VAL ILE LEU VAL PRO GLY HIS SEQRES 31 A 507 LEU SER GLY GLY GLY LEU VAL HIS PRO ILE TRP LEU VAL SEQRES 32 A 507 LEU SER TYR PHE ILE VAL VAL LEU GLY GLU LEU CYS LEU SEQRES 33 A 507 SER PRO VAL GLY LEU SER ALA THR THR LYS LEU ALA PRO SEQRES 34 A 507 ALA ALA PHE SER ALA GLN THR MET SER LEU TRP PHE LEU SEQRES 35 A 507 SER ASN ALA ALA ALA GLN ALA ILE ASN ALA GLN LEU VAL SEQRES 36 A 507 ARG PHE TYR THR PRO GLU ASN GLU THR ALA TYR PHE GLY SEQRES 37 A 507 THR ILE GLY GLY ALA ALA LEU VAL LEU GLY LEU ILE LEU SEQRES 38 A 507 LEU ALA ILE ALA PRO ARG ILE GLY ARG LEU MET LYS GLY SEQRES 39 A 507 ILE ARG LEU GLU SER SER GLY GLU ASN LEU TYR PHE GLN HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET PG4 A 608 10 HET OLA A 609 11 HET OLA A 610 10 HET OLA A 611 20 HET OLA A 612 15 HET OLA A 613 8 HET OLA A 614 11 HET OLA A 615 7 HET OLA A 616 10 HET OLC A 617 19 HET OLC A 618 16 HET OLC A 619 21 HET OLC A 620 14 HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM OLA OLEIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 PG4 C8 H18 O5 FORMUL 10 OLA 8(C18 H34 O2) FORMUL 18 OLC 4(C21 H40 O4) FORMUL 22 HOH *131(H2 O) HELIX 1 1 ASP A 5 SER A 12 1 8 HELIX 2 2 LYS A 23 TYR A 52 1 30 HELIX 3 3 GLU A 53 GLY A 57 5 5 HELIX 4 4 ASP A 62 VAL A 91 1 30 HELIX 5 5 GLY A 93 ILE A 114 1 22 HELIX 6 6 GLY A 117 ASP A 145 1 29 HELIX 7 7 ARG A 153 TYR A 183 1 31 HELIX 8 8 ASN A 184 GLY A 212 1 29 HELIX 9 9 THR A 223 GLY A 252 1 30 HELIX 10 10 THR A 255 SER A 281 1 27 HELIX 11 11 THR A 285 GLN A 311 1 27 HELIX 12 12 THR A 314 ARG A 323 1 10 HELIX 13 13 SER A 334 GLN A 339 5 6 HELIX 14 14 SER A 340 GLY A 361 1 22 HELIX 15 15 LYS A 362 GLN A 364 5 3 HELIX 16 16 THR A 366 SER A 392 1 27 HELIX 17 17 PRO A 399 SER A 417 1 19 HELIX 18 18 VAL A 419 ALA A 428 1 10 HELIX 19 19 PRO A 429 ALA A 434 5 6 HELIX 20 20 GLN A 435 VAL A 455 1 21 HELIX 21 21 ARG A 456 TYR A 458 5 3 HELIX 22 22 ASN A 462 LEU A 491 1 30 SHEET 1 A 2 GLY A 17 PHE A 18 0 SHEET 2 A 2 HIS A 21 PRO A 22 -1 O HIS A 21 N PHE A 18 SHEET 1 B 2 ASP A 327 VAL A 328 0 SHEET 2 B 2 ILE A 331 HIS A 332 -1 O ILE A 331 N VAL A 328 CISPEP 1 GLY A 252 TRP A 253 0 3.61 SITE 1 AC1 5 TYR A 40 ARG A 43 TYR A 78 GLU A 310 SITE 2 AC1 5 HOH A 828 SITE 1 AC2 6 ARG A 16 GLY A 17 PHE A 18 PHE A 19 SITE 2 AC2 6 GLY A 20 HOH A 815 SITE 1 AC3 3 PRO A 14 GLN A 15 ARG A 16 SITE 1 AC4 5 ARG A 490 HOH A 730 HOH A 749 HOH A 754 SITE 2 AC4 5 HOH A 793 SITE 1 AC5 2 HIS A 390 THR A 464 SITE 1 AC6 4 ALA A 2 TYR A 217 VAL A 218 HOH A 822 SITE 1 AC7 4 ARG A 289 GLY A 395 HOH A 745 HOH A 794 SITE 1 AC8 6 TRP A 357 GLN A 364 PRO A 365 THR A 366 SITE 2 AC8 6 ILE A 367 LYS A 370 SITE 1 AC9 3 PHE A 170 LEU A 344 ILE A 347 SITE 1 BC1 2 OLA A 611 OLC A 617 SITE 1 BC2 6 ARG A 96 TYR A 100 ALA A 126 OLA A 610 SITE 2 BC2 6 OLA A 613 OLC A 617 SITE 1 BC3 2 PRO A 115 HOH A 821 SITE 1 BC4 2 OLA A 611 OLC A 617 SITE 1 BC5 1 PHE A 19 SITE 1 BC6 2 TRP A 337 VAL A 403 SITE 1 BC7 8 ARG A 90 VAL A 91 LEU A 222 LYS A 227 SITE 2 BC7 8 MET A 234 OLA A 610 OLA A 611 OLA A 613 SITE 1 BC8 4 PRO A 388 LEU A 391 TRP A 401 HOH A 820 SITE 1 BC9 3 MET A 304 PHE A 457 THR A 469 SITE 1 CC1 3 GLN A 369 LEU A 482 PRO A 486 CRYST1 52.505 93.732 57.265 90.00 112.33 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019046 0.000000 0.007823 0.00000 SCALE2 0.000000 0.010669 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018878 0.00000