HEADER TRANSPORT PROTEIN 28-DEC-12 4IKX TITLE CRYSTAL STRUCTURE OF PEPTIDE TRANSPORTER POT (E310Q MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DI-TRIPEPTIDE ABC TRANSPORTER (PERMEASE); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 1462; SOURCE 4 STRAIN: BD53; SOURCE 5 GENE: GK2020; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3)DELTA-ACRB; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCGFP-BC KEYWDS MAJOR FACILITATOR SUPERFAMILY, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.DOKI,H.E.KATO,R.ISHITANI,O.NUREKI REVDAT 3 29-MAY-24 4IKX 1 REMARK REVDAT 2 24-AUG-22 4IKX 1 JRNL REMARK REVDAT 1 10-JUL-13 4IKX 0 JRNL AUTH S.DOKI,H.E.KATO,N.SOLCAN,M.IWAKI,M.KOYAMA,M.HATTORI,N.IWASE, JRNL AUTH 2 T.TSUKAZAKI,Y.SUGITA,H.KANDORI,S.NEWSTEAD,R.ISHITANI, JRNL AUTH 3 O.NUREKI JRNL TITL STRUCTURAL BASIS FOR DYNAMIC MECHANISM OF PROTON-COUPLED JRNL TITL 2 SYMPORT BY THE PEPTIDE TRANSPORTER POT. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 11343 2013 JRNL REFN ESSN 1091-6490 JRNL PMID 23798427 JRNL DOI 10.1073/PNAS.1301079110 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.520 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 22460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9299 - 4.5952 0.98 2788 150 0.1998 0.2206 REMARK 3 2 4.5952 - 3.6494 0.91 2519 141 0.2042 0.2292 REMARK 3 3 3.6494 - 3.1887 0.97 2761 148 0.1971 0.2213 REMARK 3 4 3.1887 - 2.8974 0.95 2765 146 0.2111 0.2281 REMARK 3 5 2.8974 - 2.6899 0.94 2701 151 0.2216 0.2973 REMARK 3 6 2.6899 - 2.5314 0.92 2646 130 0.2447 0.2531 REMARK 3 7 2.5314 - 2.4046 0.91 2598 145 0.2757 0.3549 REMARK 3 8 2.4046 - 2.3000 0.88 2539 132 0.2991 0.3258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 29.06 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.630 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.82580 REMARK 3 B22 (A**2) : -2.53780 REMARK 3 B33 (A**2) : -4.28800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.16760 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3810 REMARK 3 ANGLE : 0.660 5193 REMARK 3 CHIRALITY : 0.043 603 REMARK 3 PLANARITY : 0.003 636 REMARK 3 DIHEDRAL : 12.359 1293 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:51) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9728 11.4624 10.9395 REMARK 3 T TENSOR REMARK 3 T11: 0.0992 T22: 0.1137 REMARK 3 T33: 0.1144 T12: 0.0202 REMARK 3 T13: 0.0034 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.3873 L22: 0.5076 REMARK 3 L33: 1.7152 L12: 0.0295 REMARK 3 L13: -0.2114 L23: 0.4092 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: -0.1616 S13: 0.0625 REMARK 3 S21: 0.2049 S22: 0.0855 S23: 0.0033 REMARK 3 S31: -0.0477 S32: -0.0091 S33: 0.0189 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 52:90) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8143 5.5267 -3.6422 REMARK 3 T TENSOR REMARK 3 T11: -0.0379 T22: 0.0723 REMARK 3 T33: 0.0603 T12: 0.0354 REMARK 3 T13: -0.0631 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.9790 L22: 1.1797 REMARK 3 L33: 0.5426 L12: -0.1423 REMARK 3 L13: 0.0091 L23: 0.6748 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.0468 S13: 0.0215 REMARK 3 S21: -0.0910 S22: 0.0258 S23: -0.0541 REMARK 3 S31: -0.0636 S32: 0.0860 S33: -0.0188 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 91:211) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1407 13.1340 6.0008 REMARK 3 T TENSOR REMARK 3 T11: 0.0424 T22: 0.0411 REMARK 3 T33: 0.0680 T12: 0.0288 REMARK 3 T13: -0.0053 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.4293 L22: 0.7291 REMARK 3 L33: 0.2622 L12: -0.1155 REMARK 3 L13: -0.1827 L23: 0.1248 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: -0.0561 S13: 0.0679 REMARK 3 S21: 0.1229 S22: 0.0913 S23: 0.0196 REMARK 3 S31: -0.0303 S32: -0.0287 S33: 0.0403 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 212:251) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2464 15.3039 10.7774 REMARK 3 T TENSOR REMARK 3 T11: 0.3521 T22: 0.5270 REMARK 3 T33: 0.3671 T12: -0.0085 REMARK 3 T13: 0.0235 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.0257 L22: 0.1803 REMARK 3 L33: 0.0360 L12: -0.0684 REMARK 3 L13: 0.0294 L23: -0.0824 REMARK 3 S TENSOR REMARK 3 S11: -0.1550 S12: 0.0736 S13: 0.4709 REMARK 3 S21: 0.1636 S22: 0.1440 S23: -0.3801 REMARK 3 S31: 0.1819 S32: 0.3510 S33: 0.1616 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 252:280) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9980 -2.7855 2.7785 REMARK 3 T TENSOR REMARK 3 T11: 0.1177 T22: 0.3029 REMARK 3 T33: 0.2967 T12: 0.0421 REMARK 3 T13: 0.0128 T23: 0.0561 REMARK 3 L TENSOR REMARK 3 L11: 0.8741 L22: 1.8010 REMARK 3 L33: 2.2331 L12: -0.5384 REMARK 3 L13: 0.6424 L23: -0.7974 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: -0.0429 S13: -0.0465 REMARK 3 S21: 0.0064 S22: -0.1372 S23: -0.1392 REMARK 3 S31: 0.1866 S32: 0.3428 S33: 0.0838 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 281:313) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7196 -12.0742 12.7975 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.1272 REMARK 3 T33: 0.0963 T12: 0.0718 REMARK 3 T13: -0.0109 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.9616 L22: 0.8355 REMARK 3 L33: 1.2731 L12: -0.0697 REMARK 3 L13: 0.3029 L23: -0.2341 REMARK 3 S TENSOR REMARK 3 S11: -0.1229 S12: -0.2264 S13: -0.0612 REMARK 3 S21: 0.3032 S22: 0.0668 S23: -0.1185 REMARK 3 S31: -0.2141 S32: 0.0184 S33: 0.0201 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 314:363) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3604 -8.0937 -1.1881 REMARK 3 T TENSOR REMARK 3 T11: 0.0826 T22: 0.1357 REMARK 3 T33: 0.1765 T12: -0.0205 REMARK 3 T13: -0.0049 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.9343 L22: 1.1777 REMARK 3 L33: 1.3131 L12: -0.2720 REMARK 3 L13: -0.3961 L23: 0.0673 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.0111 S13: -0.0336 REMARK 3 S21: 0.0176 S22: 0.0796 S23: 0.2737 REMARK 3 S31: 0.0500 S32: -0.2442 S33: -0.0192 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 364:427) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0407 -14.9724 2.1738 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.0777 REMARK 3 T33: 0.2060 T12: -0.0297 REMARK 3 T13: 0.0044 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.0549 L22: 1.1992 REMARK 3 L33: 1.1652 L12: -0.2219 REMARK 3 L13: 0.0862 L23: -0.5259 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: 0.0008 S13: -0.0871 REMARK 3 S21: -0.0874 S22: 0.0443 S23: 0.2193 REMARK 3 S31: 0.2700 S32: -0.1246 S33: -0.0295 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 428:493) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6967 -12.8806 4.5345 REMARK 3 T TENSOR REMARK 3 T11: 0.1872 T22: 0.1196 REMARK 3 T33: 0.1554 T12: 0.0036 REMARK 3 T13: -0.0014 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.6893 L22: 1.1028 REMARK 3 L33: 0.6150 L12: 0.2943 REMARK 3 L13: 0.0529 L23: -0.5389 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: -0.0681 S13: 0.0444 REMARK 3 S21: 0.2301 S22: -0.0544 S23: 0.0504 REMARK 3 S31: 0.1086 S32: 0.2214 S33: -0.0182 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22683 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 41% PEG 400, 100MM ADA-NAOH, 40MM REMARK 280 LI2SO4, PH 6.5, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.61950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 329 REMARK 465 GLY A 330 REMARK 465 SER A 392 REMARK 465 GLY A 393 REMARK 465 GLY A 494 REMARK 465 ILE A 495 REMARK 465 ARG A 496 REMARK 465 LEU A 497 REMARK 465 GLU A 498 REMARK 465 SER A 499 REMARK 465 SER A 500 REMARK 465 GLY A 501 REMARK 465 GLU A 502 REMARK 465 ASN A 503 REMARK 465 LEU A 504 REMARK 465 TYR A 505 REMARK 465 PHE A 506 REMARK 465 GLN A 507 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CD CE NZ REMARK 470 LYS A 182 CD CE NZ REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 LYS A 227 CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 VAL A 239 CG1 CG2 REMARK 470 ARG A 280 NE CZ NH1 NH2 REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 ILE A 331 CG1 CG2 CD1 REMARK 470 LYS A 362 CD CE NZ REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 ARG A 487 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 493 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 18 87.08 -156.27 REMARK 500 VAL A 91 -60.78 -130.96 REMARK 500 TYR A 183 -74.04 -107.68 REMARK 500 THR A 314 -79.90 -124.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 605 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IKV RELATED DB: PDB REMARK 900 RELATED ID: 4IKW RELATED DB: PDB REMARK 900 RELATED ID: 4IKY RELATED DB: PDB REMARK 900 RELATED ID: 4IKZ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE PROTEIN WAS ISOLATED FROM STRAIN BD53 OF REMARK 999 GEOBACILLUS SPECIES WHOSE SEQUENCE IS NOT AVAILABLE IN THE UNIPROT REMARK 999 DATABASE. THE SEQUENCE CONSTRUCT IS THE SAME AS Q5KYD1_GEOKA. C- REMARK 999 TERMINAL RESIDUES LESSGENLYFQ ARE EXPRESSION TAGS. RESIDUE 310 REMARK 999 (E310Q) IS ENGINEERED MUTATION. DBREF 4IKX A 1 507 PDB 4IKX 4IKX 1 507 SEQRES 1 A 507 MET ALA SER ILE ASP LYS GLN GLN ILE ALA ALA SER VAL SEQRES 2 A 507 PRO GLN ARG GLY PHE PHE GLY HIS PRO LYS GLY LEU PHE SEQRES 3 A 507 THR LEU PHE PHE THR GLU PHE TRP GLU ARG PHE SER TYR SEQRES 4 A 507 TYR GLY MET ARG ALA ILE LEU VAL TYR TYR MET TYR TYR SEQRES 5 A 507 GLU VAL SER LYS GLY GLY LEU GLY LEU ASP GLU HIS LEU SEQRES 6 A 507 ALA LEU ALA ILE MET SER ILE TYR GLY ALA LEU VAL TYR SEQRES 7 A 507 MET SER GLY ILE ILE GLY GLY TRP LEU ALA ASP ARG VAL SEQRES 8 A 507 PHE GLY THR SER ARG ALA VAL PHE TYR GLY GLY LEU LEU SEQRES 9 A 507 ILE MET ALA GLY HIS ILE ALA LEU ALA ILE PRO GLY GLY SEQRES 10 A 507 VAL ALA ALA LEU PHE VAL SER MET ALA LEU ILE VAL LEU SEQRES 11 A 507 GLY THR GLY LEU LEU LYS PRO ASN VAL SER SER ILE VAL SEQRES 12 A 507 GLY ASP MET TYR LYS PRO GLY ASP ASP ARG ARG ASP ALA SEQRES 13 A 507 GLY PHE SER ILE PHE TYR MET GLY ILE ASN LEU GLY ALA SEQRES 14 A 507 PHE LEU ALA PRO LEU VAL VAL GLY THR ALA GLY MET LYS SEQRES 15 A 507 TYR ASN PHE HIS LEU GLY PHE GLY LEU ALA ALA VAL GLY SEQRES 16 A 507 MET PHE LEU GLY LEU VAL VAL PHE VAL ALA THR ARG LYS SEQRES 17 A 507 LYS ASN LEU GLY LEU ALA GLY THR TYR VAL PRO ASN PRO SEQRES 18 A 507 LEU THR PRO ALA GLU LYS LYS LYS ALA ALA ALA ILE MET SEQRES 19 A 507 ALA VAL GLY ALA VAL VAL ILE ALA VAL LEU LEU ALA ILE SEQRES 20 A 507 LEU ILE PRO ASN GLY TRP PHE THR VAL GLU THR PHE ILE SEQRES 21 A 507 SER LEU VAL GLY ILE LEU GLY ILE ILE ILE PRO ILE ILE SEQRES 22 A 507 TYR PHE VAL VAL MET TYR ARG SER PRO LYS THR THR ALA SEQRES 23 A 507 GLU GLU ARG SER ARG VAL ILE ALA TYR ILE PRO LEU PHE SEQRES 24 A 507 VAL ALA SER ALA MET PHE TRP ALA ILE GLN GLN GLN GLY SEQRES 25 A 507 SER THR ILE LEU ALA ASN TYR ALA ASP LYS ARG THR GLN SEQRES 26 A 507 LEU ASP VAL ALA GLY ILE HIS LEU SER PRO ALA TRP PHE SEQRES 27 A 507 GLN SER LEU ASN PRO LEU PHE ILE ILE ILE LEU ALA PRO SEQRES 28 A 507 VAL PHE ALA TRP MET TRP VAL LYS LEU GLY LYS ARG GLN SEQRES 29 A 507 PRO THR ILE PRO GLN LYS PHE ALA LEU GLY LEU LEU PHE SEQRES 30 A 507 ALA GLY LEU SER PHE ILE VAL ILE LEU VAL PRO GLY HIS SEQRES 31 A 507 LEU SER GLY GLY GLY LEU VAL HIS PRO ILE TRP LEU VAL SEQRES 32 A 507 LEU SER TYR PHE ILE VAL VAL LEU GLY GLU LEU CYS LEU SEQRES 33 A 507 SER PRO VAL GLY LEU SER ALA THR THR LYS LEU ALA PRO SEQRES 34 A 507 ALA ALA PHE SER ALA GLN THR MET SER LEU TRP PHE LEU SEQRES 35 A 507 SER ASN ALA ALA ALA GLN ALA ILE ASN ALA GLN LEU VAL SEQRES 36 A 507 ARG PHE TYR THR PRO GLU ASN GLU THR ALA TYR PHE GLY SEQRES 37 A 507 THR ILE GLY GLY ALA ALA LEU VAL LEU GLY LEU ILE LEU SEQRES 38 A 507 LEU ALA ILE ALA PRO ARG ILE GLY ARG LEU MET LYS GLY SEQRES 39 A 507 ILE ARG LEU GLU SER SER GLY GLU ASN LEU TYR PHE GLN HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET OLA A 605 16 HETNAM SO4 SULFATE ION HETNAM OLA OLEIC ACID FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 OLA C18 H34 O2 FORMUL 7 HOH *83(H2 O) HELIX 1 1 ASP A 5 SER A 12 1 8 HELIX 2 2 LYS A 23 TYR A 52 1 30 HELIX 3 3 GLU A 53 GLY A 57 5 5 HELIX 4 4 ASP A 62 VAL A 91 1 30 HELIX 5 5 GLY A 93 ILE A 114 1 22 HELIX 6 6 GLY A 117 TYR A 147 1 31 HELIX 7 7 ARG A 153 TYR A 183 1 31 HELIX 8 8 ASN A 184 LEU A 211 1 28 HELIX 9 9 THR A 223 GLY A 252 1 30 HELIX 10 10 THR A 255 ARG A 280 1 26 HELIX 11 11 THR A 285 GLN A 311 1 27 HELIX 12 12 THR A 314 ARG A 323 1 10 HELIX 13 13 SER A 334 GLN A 339 5 6 HELIX 14 14 SER A 340 GLY A 361 1 22 HELIX 15 15 LYS A 362 GLN A 364 5 3 HELIX 16 16 THR A 366 LEU A 391 1 26 HELIX 17 17 HIS A 398 SER A 417 1 20 HELIX 18 18 VAL A 419 ALA A 428 1 10 HELIX 19 19 PRO A 429 ALA A 434 5 6 HELIX 20 20 GLN A 435 VAL A 455 1 21 HELIX 21 21 ARG A 456 TYR A 458 5 3 HELIX 22 22 ASN A 462 MET A 492 1 31 SHEET 1 A 2 GLY A 17 PHE A 18 0 SHEET 2 A 2 HIS A 21 PRO A 22 -1 O HIS A 21 N PHE A 18 SITE 1 AC1 4 ALA A 2 THR A 216 TYR A 217 VAL A 218 SITE 1 AC2 5 ARG A 16 GLY A 17 PHE A 18 PHE A 19 SITE 2 AC2 5 GLY A 20 SITE 1 AC3 5 GLN A 15 HOH A 710 HOH A 721 HOH A 774 SITE 2 AC3 5 HOH A 777 SITE 1 AC4 3 PRO A 14 GLN A 15 ARG A 16 SITE 1 AC5 3 PHE A 92 ARG A 96 TYR A 100 CRYST1 54.146 95.239 57.592 90.00 111.21 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018469 0.000000 0.007166 0.00000 SCALE2 0.000000 0.010500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018625 0.00000