HEADER TRANSPORT PROTEIN 28-DEC-12 4IKY TITLE CRYSTAL STRUCTURE OF PEPTIDE TRANSPORTER POT (E310Q MUTANT) IN COMPLEX TITLE 2 WITH SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DI-TRIPEPTIDE ABC TRANSPORTER (PERMEASE); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 1462; SOURCE 4 STRAIN: BD53; SOURCE 5 GENE: GK2020; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3)DELTA-ACRB; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCGFP-BC KEYWDS MAJOR FACILITATOR SUPERFAMILY, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.DOKI,H.E.KATO,R.ISHITANI,O.NUREKI REVDAT 3 29-MAY-24 4IKY 1 REMARK REVDAT 2 24-AUG-22 4IKY 1 JRNL REMARK REVDAT 1 10-JUL-13 4IKY 0 JRNL AUTH S.DOKI,H.E.KATO,N.SOLCAN,M.IWAKI,M.KOYAMA,M.HATTORI,N.IWASE, JRNL AUTH 2 T.TSUKAZAKI,Y.SUGITA,H.KANDORI,S.NEWSTEAD,R.ISHITANI, JRNL AUTH 3 O.NUREKI JRNL TITL STRUCTURAL BASIS FOR DYNAMIC MECHANISM OF PROTON-COUPLED JRNL TITL 2 SYMPORT BY THE PEPTIDE TRANSPORTER POT. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 11343 2013 JRNL REFN ESSN 1091-6490 JRNL PMID 23798427 JRNL DOI 10.1073/PNAS.1301079110 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.480 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 27920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6425 - 4.5207 0.92 2685 142 0.2056 0.2556 REMARK 3 2 4.5207 - 3.5897 0.93 2674 142 0.1851 0.2053 REMARK 3 3 3.5897 - 3.1363 0.98 2803 150 0.1891 0.2222 REMARK 3 4 3.1363 - 2.8498 0.97 2784 142 0.1974 0.2225 REMARK 3 5 2.8498 - 2.6456 0.95 2691 162 0.1977 0.2271 REMARK 3 6 2.6456 - 2.4897 0.94 2672 141 0.2120 0.2625 REMARK 3 7 2.4897 - 2.3650 0.92 2655 138 0.2416 0.2783 REMARK 3 8 2.3650 - 2.2621 0.90 2568 135 0.2715 0.3113 REMARK 3 9 2.2621 - 2.1750 0.89 2538 122 0.2987 0.3622 REMARK 3 10 2.1750 - 2.1000 0.86 2429 147 0.3350 0.3467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.47 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 41.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.680 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.81060 REMARK 3 B22 (A**2) : -3.37340 REMARK 3 B33 (A**2) : -14.43730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.49270 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3907 REMARK 3 ANGLE : 0.733 5298 REMARK 3 CHIRALITY : 0.048 607 REMARK 3 PLANARITY : 0.004 641 REMARK 3 DIHEDRAL : 12.068 1353 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:51) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9216 11.2829 10.0549 REMARK 3 T TENSOR REMARK 3 T11: 0.2889 T22: 0.2458 REMARK 3 T33: 0.2419 T12: 0.0820 REMARK 3 T13: -0.0049 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.7654 L22: 0.9116 REMARK 3 L33: 0.2744 L12: -0.2348 REMARK 3 L13: 0.3690 L23: -0.1651 REMARK 3 S TENSOR REMARK 3 S11: -0.1469 S12: -0.2815 S13: 0.0147 REMARK 3 S21: 0.2117 S22: 0.2302 S23: 0.0051 REMARK 3 S31: 0.1416 S32: 0.2708 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 52:90) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5547 4.8396 -4.0803 REMARK 3 T TENSOR REMARK 3 T11: 0.3836 T22: 0.2286 REMARK 3 T33: 0.2347 T12: 0.0618 REMARK 3 T13: -0.0126 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.5135 L22: 0.7131 REMARK 3 L33: 0.1631 L12: 0.4097 REMARK 3 L13: -0.2554 L23: -0.1358 REMARK 3 S TENSOR REMARK 3 S11: -0.1184 S12: -0.0336 S13: -0.0913 REMARK 3 S21: -0.1057 S22: -0.0606 S23: -0.0637 REMARK 3 S31: 0.1823 S32: -0.0660 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 91:152) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9448 13.7969 7.1568 REMARK 3 T TENSOR REMARK 3 T11: 0.2579 T22: 0.1836 REMARK 3 T33: 0.2450 T12: 0.0155 REMARK 3 T13: -0.0178 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 1.0643 L22: 0.6976 REMARK 3 L33: 0.2693 L12: -0.5943 REMARK 3 L13: 0.1962 L23: -0.3788 REMARK 3 S TENSOR REMARK 3 S11: -0.1704 S12: -0.1347 S13: 0.0783 REMARK 3 S21: 0.0118 S22: 0.0919 S23: -0.1680 REMARK 3 S31: 0.1244 S32: -0.0886 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 153:210) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8105 11.6281 3.6083 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.2233 REMARK 3 T33: 0.2257 T12: 0.0711 REMARK 3 T13: 0.0263 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.7389 L22: 0.9290 REMARK 3 L33: 0.1056 L12: -0.2831 REMARK 3 L13: -0.2895 L23: -0.1239 REMARK 3 S TENSOR REMARK 3 S11: -0.1385 S12: -0.0799 S13: 0.1138 REMARK 3 S21: 0.0919 S22: 0.0346 S23: 0.0843 REMARK 3 S31: -0.1231 S32: -0.0369 S33: -0.0037 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 211:251) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1446 15.0904 10.7999 REMARK 3 T TENSOR REMARK 3 T11: 0.3026 T22: 0.7063 REMARK 3 T33: 0.3481 T12: -0.2024 REMARK 3 T13: 0.0307 T23: -0.0706 REMARK 3 L TENSOR REMARK 3 L11: 0.2601 L22: 1.1295 REMARK 3 L33: 0.0279 L12: 0.0725 REMARK 3 L13: 0.1314 L23: -0.2013 REMARK 3 S TENSOR REMARK 3 S11: -0.3912 S12: 0.3531 S13: -0.2813 REMARK 3 S21: 0.0533 S22: 0.0225 S23: -0.2736 REMARK 3 S31: -0.1083 S32: 0.0560 S33: -0.0141 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 252:280) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8941 -3.6982 3.3243 REMARK 3 T TENSOR REMARK 3 T11: -0.5266 T22: 0.4546 REMARK 3 T33: 0.2093 T12: -0.1648 REMARK 3 T13: -0.2354 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.9060 L22: 2.3118 REMARK 3 L33: 0.5417 L12: -0.4536 REMARK 3 L13: 0.0776 L23: 1.0061 REMARK 3 S TENSOR REMARK 3 S11: 0.6653 S12: 0.3517 S13: 0.3291 REMARK 3 S21: -1.4842 S22: 0.3078 S23: -0.8367 REMARK 3 S31: -0.7062 S32: 1.0104 S33: 0.6727 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 281:313) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3883 -11.8212 12.9025 REMARK 3 T TENSOR REMARK 3 T11: 0.2225 T22: 0.2060 REMARK 3 T33: 0.2046 T12: 0.0108 REMARK 3 T13: -0.0056 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.3639 L22: 0.3367 REMARK 3 L33: 0.0812 L12: 0.4365 REMARK 3 L13: 0.1926 L23: 0.2649 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: -0.1632 S13: -0.0587 REMARK 3 S21: 0.2275 S22: 0.0917 S23: -0.0054 REMARK 3 S31: -0.2448 S32: -0.3422 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 314:363) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8245 -7.5102 -2.4563 REMARK 3 T TENSOR REMARK 3 T11: 0.1206 T22: 0.2455 REMARK 3 T33: 0.2509 T12: 0.0181 REMARK 3 T13: 0.0198 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.6913 L22: 0.6847 REMARK 3 L33: 0.2134 L12: -0.0916 REMARK 3 L13: -0.0747 L23: 0.3596 REMARK 3 S TENSOR REMARK 3 S11: -0.1078 S12: 0.0731 S13: -0.1308 REMARK 3 S21: -0.0650 S22: -0.0521 S23: 0.2686 REMARK 3 S31: -0.1632 S32: -0.3392 S33: -0.0766 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 364:462) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4797 -11.8666 2.0532 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.2113 REMARK 3 T33: 0.2224 T12: -0.0069 REMARK 3 T13: 0.0091 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.8287 L22: 1.8588 REMARK 3 L33: 0.6281 L12: -0.3964 REMARK 3 L13: 0.0921 L23: -0.5502 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.0096 S13: -0.0854 REMARK 3 S21: 0.0077 S22: -0.0536 S23: 0.0292 REMARK 3 S31: -0.0097 S32: 0.0142 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 463:494) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8494 -20.8052 6.1697 REMARK 3 T TENSOR REMARK 3 T11: 0.2544 T22: 0.1991 REMARK 3 T33: 0.2365 T12: -0.0013 REMARK 3 T13: -0.0175 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.8050 L22: 0.5981 REMARK 3 L33: 0.0842 L12: -0.0312 REMARK 3 L13: -0.2176 L23: 0.1135 REMARK 3 S TENSOR REMARK 3 S11: -0.1541 S12: -0.1393 S13: -0.0622 REMARK 3 S21: 0.2506 S22: -0.0884 S23: -0.0086 REMARK 3 S31: -0.2912 S32: -0.2922 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IKY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27920 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 400, 100MM ADA-NAOH, 200MM REMARK 280 LI2SO4, PH 6.5, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.76800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 495 REMARK 465 ARG A 496 REMARK 465 LEU A 497 REMARK 465 GLU A 498 REMARK 465 SER A 499 REMARK 465 SER A 500 REMARK 465 GLY A 501 REMARK 465 GLU A 502 REMARK 465 ASN A 503 REMARK 465 LEU A 504 REMARK 465 TYR A 505 REMARK 465 PHE A 506 REMARK 465 GLN A 507 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 2 N CA CB REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 GLN A 7 CG CD OE1 NE2 REMARK 470 LYS A 23 CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 208 CD CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 229 CD CE NZ REMARK 470 ILE A 249 CG1 CG2 CD1 REMARK 470 ASN A 251 CG OD1 ND2 REMARK 470 TRP A 253 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 253 CZ3 CH2 REMARK 470 LYS A 359 CG CD CE NZ REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 ARG A 456 CZ NH1 NH2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 LYS A 493 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 459 OD1 ASN A 462 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 91 -47.41 -138.45 REMARK 500 VAL A 175 -62.53 -99.78 REMARK 500 TYR A 183 -78.58 -101.00 REMARK 500 THR A 314 -82.22 -119.31 REMARK 500 LYS A 493 -73.08 -59.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 608 REMARK 610 OLA A 609 REMARK 610 OLA A 610 REMARK 610 OLA A 611 REMARK 610 OLA A 612 REMARK 610 OLA A 613 REMARK 610 OLC A 614 REMARK 610 OLC A 615 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 615 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IKV RELATED DB: PDB REMARK 900 RELATED ID: 4IKW RELATED DB: PDB REMARK 900 RELATED ID: 4IKX RELATED DB: PDB REMARK 900 RELATED ID: 4IKZ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE PROTEIN WAS ISOLATED FROM STRAIN BD53 OF REMARK 999 GEOBACILLUS SPECIES WHOSE SEQUENCE IS NOT AVAILABLE IN THE UNIPROT REMARK 999 DATABASE. THE SEQUENCE CONSTRUCT IS THE SAME AS Q5KYD1_GEOKA. C- REMARK 999 TERMINAL RESIDUES LESSGENLYFQ ARE EXPRESSION TAGS. RESIDUE 310 REMARK 999 (E310Q) IS ENGINEERED MUTATION. DBREF 4IKY A 1 507 PDB 4IKY 4IKY 1 507 SEQRES 1 A 507 MET ALA SER ILE ASP LYS GLN GLN ILE ALA ALA SER VAL SEQRES 2 A 507 PRO GLN ARG GLY PHE PHE GLY HIS PRO LYS GLY LEU PHE SEQRES 3 A 507 THR LEU PHE PHE THR GLU PHE TRP GLU ARG PHE SER TYR SEQRES 4 A 507 TYR GLY MET ARG ALA ILE LEU VAL TYR TYR MET TYR TYR SEQRES 5 A 507 GLU VAL SER LYS GLY GLY LEU GLY LEU ASP GLU HIS LEU SEQRES 6 A 507 ALA LEU ALA ILE MET SER ILE TYR GLY ALA LEU VAL TYR SEQRES 7 A 507 MET SER GLY ILE ILE GLY GLY TRP LEU ALA ASP ARG VAL SEQRES 8 A 507 PHE GLY THR SER ARG ALA VAL PHE TYR GLY GLY LEU LEU SEQRES 9 A 507 ILE MET ALA GLY HIS ILE ALA LEU ALA ILE PRO GLY GLY SEQRES 10 A 507 VAL ALA ALA LEU PHE VAL SER MET ALA LEU ILE VAL LEU SEQRES 11 A 507 GLY THR GLY LEU LEU LYS PRO ASN VAL SER SER ILE VAL SEQRES 12 A 507 GLY ASP MET TYR LYS PRO GLY ASP ASP ARG ARG ASP ALA SEQRES 13 A 507 GLY PHE SER ILE PHE TYR MET GLY ILE ASN LEU GLY ALA SEQRES 14 A 507 PHE LEU ALA PRO LEU VAL VAL GLY THR ALA GLY MET LYS SEQRES 15 A 507 TYR ASN PHE HIS LEU GLY PHE GLY LEU ALA ALA VAL GLY SEQRES 16 A 507 MET PHE LEU GLY LEU VAL VAL PHE VAL ALA THR ARG LYS SEQRES 17 A 507 LYS ASN LEU GLY LEU ALA GLY THR TYR VAL PRO ASN PRO SEQRES 18 A 507 LEU THR PRO ALA GLU LYS LYS LYS ALA ALA ALA ILE MET SEQRES 19 A 507 ALA VAL GLY ALA VAL VAL ILE ALA VAL LEU LEU ALA ILE SEQRES 20 A 507 LEU ILE PRO ASN GLY TRP PHE THR VAL GLU THR PHE ILE SEQRES 21 A 507 SER LEU VAL GLY ILE LEU GLY ILE ILE ILE PRO ILE ILE SEQRES 22 A 507 TYR PHE VAL VAL MET TYR ARG SER PRO LYS THR THR ALA SEQRES 23 A 507 GLU GLU ARG SER ARG VAL ILE ALA TYR ILE PRO LEU PHE SEQRES 24 A 507 VAL ALA SER ALA MET PHE TRP ALA ILE GLN GLN GLN GLY SEQRES 25 A 507 SER THR ILE LEU ALA ASN TYR ALA ASP LYS ARG THR GLN SEQRES 26 A 507 LEU ASP VAL ALA GLY ILE HIS LEU SER PRO ALA TRP PHE SEQRES 27 A 507 GLN SER LEU ASN PRO LEU PHE ILE ILE ILE LEU ALA PRO SEQRES 28 A 507 VAL PHE ALA TRP MET TRP VAL LYS LEU GLY LYS ARG GLN SEQRES 29 A 507 PRO THR ILE PRO GLN LYS PHE ALA LEU GLY LEU LEU PHE SEQRES 30 A 507 ALA GLY LEU SER PHE ILE VAL ILE LEU VAL PRO GLY HIS SEQRES 31 A 507 LEU SER GLY GLY GLY LEU VAL HIS PRO ILE TRP LEU VAL SEQRES 32 A 507 LEU SER TYR PHE ILE VAL VAL LEU GLY GLU LEU CYS LEU SEQRES 33 A 507 SER PRO VAL GLY LEU SER ALA THR THR LYS LEU ALA PRO SEQRES 34 A 507 ALA ALA PHE SER ALA GLN THR MET SER LEU TRP PHE LEU SEQRES 35 A 507 SER ASN ALA ALA ALA GLN ALA ILE ASN ALA GLN LEU VAL SEQRES 36 A 507 ARG PHE TYR THR PRO GLU ASN GLU THR ALA TYR PHE GLY SEQRES 37 A 507 THR ILE GLY GLY ALA ALA LEU VAL LEU GLY LEU ILE LEU SEQRES 38 A 507 LEU ALA ILE ALA PRO ARG ILE GLY ARG LEU MET LYS GLY SEQRES 39 A 507 ILE ARG LEU GLU SER SER GLY GLU ASN LEU TYR PHE GLN HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET OLA A 608 10 HET OLA A 609 16 HET OLA A 610 15 HET OLA A 611 8 HET OLA A 612 11 HET OLA A 613 8 HET OLC A 614 11 HET OLC A 615 21 HETNAM SO4 SULFATE ION HETNAM OLA OLEIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 OLA 6(C18 H34 O2) FORMUL 15 OLC 2(C21 H40 O4) FORMUL 17 HOH *89(H2 O) HELIX 1 1 ASP A 5 VAL A 13 1 9 HELIX 2 2 LYS A 23 TYR A 52 1 30 HELIX 3 3 GLU A 53 GLY A 57 5 5 HELIX 4 4 ASP A 62 VAL A 91 1 30 HELIX 5 5 GLY A 93 ILE A 114 1 22 HELIX 6 6 GLY A 117 TYR A 147 1 31 HELIX 7 7 ARG A 153 TYR A 183 1 31 HELIX 8 8 ASN A 184 GLY A 212 1 29 HELIX 9 9 THR A 223 GLY A 252 1 30 HELIX 10 10 THR A 255 SER A 281 1 27 HELIX 11 11 THR A 285 GLN A 311 1 27 HELIX 12 12 THR A 314 ARG A 323 1 10 HELIX 13 13 SER A 334 GLN A 339 5 6 HELIX 14 14 SER A 340 GLY A 361 1 22 HELIX 15 15 LYS A 362 GLN A 364 5 3 HELIX 16 16 THR A 366 SER A 392 1 27 HELIX 17 17 PRO A 399 SER A 417 1 19 HELIX 18 18 VAL A 419 ALA A 428 1 10 HELIX 19 19 PRO A 429 ALA A 434 5 6 HELIX 20 20 GLN A 435 ALA A 452 1 18 HELIX 21 21 GLN A 453 TYR A 458 5 6 HELIX 22 22 ASN A 462 MET A 492 1 31 SHEET 1 A 2 GLY A 17 PHE A 18 0 SHEET 2 A 2 HIS A 21 PRO A 22 -1 O HIS A 21 N PHE A 18 SHEET 1 B 2 ASP A 327 VAL A 328 0 SHEET 2 B 2 ILE A 331 HIS A 332 -1 O ILE A 331 N VAL A 328 CISPEP 1 GLY A 252 TRP A 253 0 2.39 SITE 1 AC1 7 ARG A 36 TYR A 40 ARG A 43 TYR A 78 SITE 2 AC1 7 GLN A 310 HOH A 723 HOH A 742 SITE 1 AC2 5 ARG A 16 GLY A 17 PHE A 18 PHE A 19 SITE 2 AC2 5 GLY A 20 SITE 1 AC3 3 PRO A 14 GLN A 15 ARG A 16 SITE 1 AC4 4 ARG A 490 HOH A 734 HOH A 735 HOH A 738 SITE 1 AC5 2 HIS A 390 THR A 464 SITE 1 AC6 2 TYR A 217 VAL A 218 SITE 1 AC7 3 ARG A 289 GLY A 395 HOH A 744 SITE 1 AC8 3 VAL A 91 OLA A 609 OLC A 614 SITE 1 AC9 4 PHE A 92 ARG A 96 TYR A 100 OLA A 608 SITE 1 BC1 1 PRO A 115 SITE 1 BC2 1 LEU A 103 SITE 1 BC3 2 PHE A 353 PRO A 365 SITE 1 BC4 1 TRP A 337 SITE 1 BC5 6 ARG A 90 VAL A 91 LEU A 222 LYS A 227 SITE 2 BC5 6 MET A 234 OLA A 608 SITE 1 BC6 3 MET A 304 PHE A 457 THR A 469 CRYST1 52.637 93.536 57.507 90.00 112.38 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018998 0.000000 0.007824 0.00000 SCALE2 0.000000 0.010691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018806 0.00000