HEADER TRANSFERASE/TRANSFERASE INHIBITOR 01-JAN-13 4IM3
TITLE STRUCTURE OF TANK-BINDING KINASE 1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE TBK1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 1 TO 657;
COMPND 5 SYNONYM: NF-KAPPA-B-ACTIVATING KINASE, T2K, TANK-BINDING KINASE 1;
COMPND 6 EC: 2.7.11.1;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: TBK1, NAK;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108
KEYWDS KINASE, SERINE/THREONINE KINASE, BX795, PCMNP, TRANSFERASE-
KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR D.TU,M.J.ECK
REVDAT 4 28-FEB-24 4IM3 1 REMARK SEQADV LINK
REVDAT 3 17-JUL-19 4IM3 1 JRNL REMARK
REVDAT 2 20-MAR-13 4IM3 1 REMARK
REVDAT 1 06-MAR-13 4IM3 0
JRNL AUTH D.TU,Z.ZHU,A.Y.ZHOU,C.H.YUN,K.E.LEE,A.V.TOMS,Y.LI,G.P.DUNN,
JRNL AUTH 2 E.CHAN,T.THAI,S.YANG,S.B.FICARRO,J.A.MARTO,H.JEON,W.C.HAHN,
JRNL AUTH 3 D.A.BARBIE,M.J.ECK
JRNL TITL STRUCTURE AND UBIQUITINATION-DEPENDENT ACTIVATION OF
JRNL TITL 2 TANK-BINDING KINASE 1.
JRNL REF CELL REP V. 3 747 2013
JRNL REFN ESSN 2211-1247
JRNL PMID 23453972
JRNL DOI 10.1016/J.CELREP.2013.01.033
REMARK 2
REMARK 2 RESOLUTION. 3.34 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.34
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.80
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8
REMARK 3 NUMBER OF REFLECTIONS : 13358
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.223
REMARK 3 R VALUE (WORKING SET) : 0.220
REMARK 3 FREE R VALUE : 0.279
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120
REMARK 3 FREE R VALUE TEST SET COUNT : 684
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 40.7986 - 5.7106 0.98 2795 141 0.2207 0.2848
REMARK 3 2 5.7106 - 4.5346 0.99 2755 137 0.2013 0.2643
REMARK 3 3 4.5346 - 3.9619 0.99 2742 128 0.1950 0.2234
REMARK 3 4 3.9619 - 3.5999 1.00 2695 160 0.2473 0.2810
REMARK 3 5 3.5999 - 3.3420 0.63 1687 118 0.3034 0.4161
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.86
REMARK 3 K_SOL : 0.32
REMARK 3 B_SOL : 99.45
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.200
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -20.72280
REMARK 3 B22 (A**2) : -20.72280
REMARK 3 B33 (A**2) : 41.44560
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.006 5021
REMARK 3 ANGLE : 1.213 6782
REMARK 3 CHIRALITY : 0.056 752
REMARK 3 PLANARITY : 0.005 861
REMARK 3 DIHEDRAL : 15.413 1878
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ -1:216)
REMARK 3 ORIGIN FOR THE GROUP (A): 111.0307 18.2641 -31.5475
REMARK 3 T TENSOR
REMARK 3 T11: 1.0348 T22: 0.2974
REMARK 3 T33: 0.8167 T12: -0.0764
REMARK 3 T13: 0.1805 T23: -0.0151
REMARK 3 L TENSOR
REMARK 3 L11: 6.5158 L22: 6.2180
REMARK 3 L33: 2.8465 L12: -3.9774
REMARK 3 L13: -1.5215 L23: 1.0386
REMARK 3 S TENSOR
REMARK 3 S11: 0.0319 S12: 0.7868 S13: -1.2225
REMARK 3 S21: -0.8940 S22: -0.1876 S23: 0.0527
REMARK 3 S31: 0.8139 S32: -0.4423 S33: 0.0578
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 217:270)
REMARK 3 ORIGIN FOR THE GROUP (A): 90.6240 17.6433 -10.7186
REMARK 3 T TENSOR
REMARK 3 T11: 0.8752 T22: 0.9724
REMARK 3 T33: 1.4592 T12: -0.0018
REMARK 3 T13: 0.1960 T23: 0.3200
REMARK 3 L TENSOR
REMARK 3 L11: 6.6942 L22: 5.1681
REMARK 3 L33: 4.9136 L12: 2.3168
REMARK 3 L13: 0.6707 L23: -0.0926
REMARK 3 S TENSOR
REMARK 3 S11: 0.1870 S12: -0.5859 S13: -2.6519
REMARK 3 S21: 0.6665 S22: -0.2312 S23: 0.2667
REMARK 3 S31: 0.3430 S32: -0.7311 S33: -0.0824
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 271:470)
REMARK 3 ORIGIN FOR THE GROUP (A): 94.8082 46.8880 -14.3881
REMARK 3 T TENSOR
REMARK 3 T11: 0.9759 T22: 0.7829
REMARK 3 T33: 0.5586 T12: 0.2699
REMARK 3 T13: 0.0579 T23: 0.1164
REMARK 3 L TENSOR
REMARK 3 L11: 3.5850 L22: 4.9314
REMARK 3 L33: 0.3312 L12: -1.5890
REMARK 3 L13: 0.0192 L23: 1.7144
REMARK 3 S TENSOR
REMARK 3 S11: 0.0368 S12: -0.0651 S13: -0.5915
REMARK 3 S21: -0.9258 S22: -0.1865 S23: 0.8139
REMARK 3 S31: -0.3525 S32: -0.2407 S33: 0.1250
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 471:526)
REMARK 3 ORIGIN FOR THE GROUP (A): 79.8253 92.8876 -2.9869
REMARK 3 T TENSOR
REMARK 3 T11: 0.9460 T22: 0.8651
REMARK 3 T33: 0.9409 T12: 0.2051
REMARK 3 T13: 0.0153 T23: -0.2069
REMARK 3 L TENSOR
REMARK 3 L11: 8.8849 L22: 9.5843
REMARK 3 L33: 5.9153 L12: -6.6019
REMARK 3 L13: 2.9797 L23: -4.9237
REMARK 3 S TENSOR
REMARK 3 S11: -0.7830 S12: -0.6542 S13: 1.3821
REMARK 3 S21: 1.7524 S22: 0.8676 S23: 0.0993
REMARK 3 S31: -0.2647 S32: 0.0430 S33: -0.0071
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 527:604)
REMARK 3 ORIGIN FOR THE GROUP (A): 114.8789 31.8877 0.9246
REMARK 3 T TENSOR
REMARK 3 T11: 0.9630 T22: 1.0459
REMARK 3 T33: 0.8564 T12: 0.2081
REMARK 3 T13: 0.3211 T23: 0.4296
REMARK 3 L TENSOR
REMARK 3 L11: 4.8904 L22: 6.6859
REMARK 3 L33: 0.5680 L12: -1.7492
REMARK 3 L13: 1.1188 L23: -0.4399
REMARK 3 S TENSOR
REMARK 3 S11: -0.3702 S12: -0.6890 S13: -0.6405
REMARK 3 S21: -0.1518 S22: 0.2440 S23: -0.9400
REMARK 3 S31: 0.2140 S32: 0.1615 S33: 0.1499
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 605:657)
REMARK 3 ORIGIN FOR THE GROUP (A): 84.1099 73.4323 -5.3711
REMARK 3 T TENSOR
REMARK 3 T11: 1.0885 T22: 1.1845
REMARK 3 T33: 0.4482 T12: 0.5596
REMARK 3 T13: 0.4008 T23: -0.1956
REMARK 3 L TENSOR
REMARK 3 L11: 3.6030 L22: 3.1858
REMARK 3 L33: 1.4818 L12: -1.6288
REMARK 3 L13: 1.4426 L23: -0.4002
REMARK 3 S TENSOR
REMARK 3 S11: -1.1900 S12: -0.5361 S13: 0.0421
REMARK 3 S21: 0.5693 S22: 0.4792 S23: 0.6602
REMARK 3 S31: -0.1693 S32: -0.1087 S33: 0.4053
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4IM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-13.
REMARK 100 THE DEPOSITION ID IS D_1000076923.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 06-APR-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-E
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925
REMARK 200 MONOCHROMATOR : MD2 MICRO-DIFFRACTOMETER
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13368
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 87.3
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63
REMARK 200 COMPLETENESS FOR SHELL (%) : 51.5
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: CNS
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 61.94
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 4% MPD, 100 MM HEPES PH 7.0, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.94733
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.47367
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.47367
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.94733
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 60500 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -264.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 211.98000
REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 122.38671
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -28.47367
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -5
REMARK 465 SER A -4
REMARK 465 GLY A -3
REMARK 465 SER A -2
REMARK 465 ILE A 43
REMARK 465 SER A 44
REMARK 465 PHE A 45
REMARK 465 LEU A 46
REMARK 465 ALA A 160
REMARK 465 ALA A 161
REMARK 465 ARG A 162
REMARK 465 GLU A 163
REMARK 465 LEU A 164
REMARK 465 GLU A 165
REMARK 465 ASP A 166
REMARK 465 ASP A 167
REMARK 465 GLU A 168
REMARK 465 GLN A 169
REMARK 465 PHE A 170
REMARK 465 VAL A 171
REMARK 465 SER A 172
REMARK 465 LEU A 173
REMARK 465 TYR A 174
REMARK 465 GLY A 175
REMARK 465 THR A 176
REMARK 465 GLU A 177
REMARK 465 GLU A 178
REMARK 465 TYR A 179
REMARK 465 LEU A 180
REMARK 465 HIS A 181
REMARK 465 PRO A 182
REMARK 465 ASP A 183
REMARK 465 MET A 184
REMARK 465 TYR A 185
REMARK 465 GLU A 186
REMARK 465 ARG A 187
REMARK 465 ALA A 188
REMARK 465 VAL A 189
REMARK 465 LEU A 190
REMARK 465 ARG A 191
REMARK 465 LYS A 192
REMARK 465 ASP A 193
REMARK 465 HIS A 194
REMARK 465 GLN A 195
REMARK 465 LYS A 196
REMARK 465 LYS A 197
REMARK 465 TYR A 198
REMARK 465 GLY A 199
REMARK 465 TYR A 482
REMARK 465 GLU A 483
REMARK 465 LYS A 484
REMARK 465 LEU A 485
REMARK 465 MET A 486
REMARK 465 LYS A 487
REMARK 465 ILE A 488
REMARK 465 ASN A 489
REMARK 465 LEU A 490
REMARK 465 GLU A 491
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2
REMARK 470 MET A 53 CG SD CE
REMARK 470 ARG A 54 CD NE CZ NH1 NH2
REMARK 470 LYS A 69 CD CE NZ
REMARK 470 ARG A 228 CG CD NE CZ NH1 NH2
REMARK 470 SER A 510 OG
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OG SER A 3 OE2 GLU A 656 5664 2.10
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU A 225 -68.10 65.50
REMARK 500 ASN A 254 18.65 57.71
REMARK 500 ASP A 407 111.12 -160.65
REMARK 500 LYS A 480 20.25 -73.53
REMARK 500 HIS A 502 -60.34 -90.38
REMARK 500 TYR A 650 68.56 -65.95
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 GLY A 294 17.88
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BX7 A 701
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 702
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 703
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 704
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 705
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 706
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 707
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4IM0 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN COMPLEXED WITH MRT67307
REMARK 900 RELATED ID: 4IM2 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH BX795
DBREF 4IM3 A 1 657 UNP Q9UHD2 TBK1_HUMAN 1 657
SEQADV 4IM3 GLY A -5 UNP Q9UHD2 EXPRESSION TAG
SEQADV 4IM3 SER A -4 UNP Q9UHD2 EXPRESSION TAG
SEQADV 4IM3 GLY A -3 UNP Q9UHD2 EXPRESSION TAG
SEQADV 4IM3 SER A -2 UNP Q9UHD2 EXPRESSION TAG
SEQADV 4IM3 GLY A -1 UNP Q9UHD2 EXPRESSION TAG
SEQADV 4IM3 SER A 0 UNP Q9UHD2 EXPRESSION TAG
SEQADV 4IM3 ASN A 135 UNP Q9UHD2 ASP 135 ENGINEERED MUTATION
SEQRES 1 A 663 GLY SER GLY SER GLY SER MET GLN SER THR SER ASN HIS
SEQRES 2 A 663 LEU TRP LEU LEU SER ASP ILE LEU GLY GLN GLY ALA THR
SEQRES 3 A 663 ALA ASN VAL PHE ARG GLY ARG HIS LYS LYS THR GLY ASP
SEQRES 4 A 663 LEU PHE ALA ILE LYS VAL PHE ASN ASN ILE SER PHE LEU
SEQRES 5 A 663 ARG PRO VAL ASP VAL GLN MET ARG GLU PHE GLU VAL LEU
SEQRES 6 A 663 LYS LYS LEU ASN HIS LYS ASN ILE VAL LYS LEU PHE ALA
SEQRES 7 A 663 ILE GLU GLU GLU THR THR THR ARG HIS LYS VAL LEU ILE
SEQRES 8 A 663 MET GLU PHE CYS PRO CYS GLY SER LEU TYR THR VAL LEU
SEQRES 9 A 663 GLU GLU PRO SER ASN ALA TYR GLY LEU PRO GLU SER GLU
SEQRES 10 A 663 PHE LEU ILE VAL LEU ARG ASP VAL VAL GLY GLY MET ASN
SEQRES 11 A 663 HIS LEU ARG GLU ASN GLY ILE VAL HIS ARG ASN ILE LYS
SEQRES 12 A 663 PRO GLY ASN ILE MET ARG VAL ILE GLY GLU ASP GLY GLN
SEQRES 13 A 663 SER VAL TYR LYS LEU THR ASP PHE GLY ALA ALA ARG GLU
SEQRES 14 A 663 LEU GLU ASP ASP GLU GLN PHE VAL SER LEU TYR GLY THR
SEQRES 15 A 663 GLU GLU TYR LEU HIS PRO ASP MET TYR GLU ARG ALA VAL
SEQRES 16 A 663 LEU ARG LYS ASP HIS GLN LYS LYS TYR GLY ALA THR VAL
SEQRES 17 A 663 ASP LEU TRP SER ILE GLY VAL THR PHE TYR HIS ALA ALA
SEQRES 18 A 663 THR GLY SER LEU PRO PHE ARG PRO PHE GLU GLY PRO ARG
SEQRES 19 A 663 ARG ASN LYS GLU VAL MET TYR LYS ILE ILE THR GLY LYS
SEQRES 20 A 663 PRO SER GLY ALA ILE SER GLY VAL GLN LYS ALA GLU ASN
SEQRES 21 A 663 GLY PRO ILE ASP TRP SER GLY ASP MET PRO VAL SER CYS
SEQRES 22 A 663 SER LEU SER ARG GLY LEU GLN VAL LEU LEU THR PRO VAL
SEQRES 23 A 663 LEU ALA ASN ILE LEU GLU ALA ASP GLN GLU LYS CYS TRP
SEQRES 24 A 663 GLY PHE ASP GLN PHE PHE ALA GLU THR SER ASP ILE LEU
SEQRES 25 A 663 HIS ARG MET VAL ILE HIS VAL PHE SER LEU GLN GLN MET
SEQRES 26 A 663 THR ALA HIS LYS ILE TYR ILE HIS SER TYR ASN THR ALA
SEQRES 27 A 663 THR ILE PHE HIS GLU LEU VAL TYR LYS GLN THR LYS ILE
SEQRES 28 A 663 ILE SER SER ASN GLN GLU LEU ILE TYR GLU GLY ARG ARG
SEQRES 29 A 663 LEU VAL LEU GLU PRO GLY ARG LEU ALA GLN HIS PHE PRO
SEQRES 30 A 663 LYS THR THR GLU GLU ASN PRO ILE PHE VAL VAL SER ARG
SEQRES 31 A 663 GLU PRO LEU ASN THR ILE GLY LEU ILE TYR GLU LYS ILE
SEQRES 32 A 663 SER LEU PRO LYS VAL HIS PRO ARG TYR ASP LEU ASP GLY
SEQRES 33 A 663 ASP ALA SER MET ALA LYS ALA ILE THR GLY VAL VAL CYS
SEQRES 34 A 663 TYR ALA CYS ARG ILE ALA SER THR LEU LEU LEU TYR GLN
SEQRES 35 A 663 GLU LEU MET ARG LYS GLY ILE ARG TRP LEU ILE GLU LEU
SEQRES 36 A 663 ILE LYS ASP ASP TYR ASN GLU THR VAL HIS LYS LYS THR
SEQRES 37 A 663 GLU VAL VAL ILE THR LEU ASP PHE CYS ILE ARG ASN ILE
SEQRES 38 A 663 GLU LYS THR VAL LYS VAL TYR GLU LYS LEU MET LYS ILE
SEQRES 39 A 663 ASN LEU GLU ALA ALA GLU LEU GLY GLU ILE SER ASP ILE
SEQRES 40 A 663 HIS THR LYS LEU LEU ARG LEU SER SER SER GLN GLY THR
SEQRES 41 A 663 ILE GLU THR SER LEU GLN ASP ILE ASP SER ARG LEU SER
SEQRES 42 A 663 PRO GLY GLY SER LEU ALA ASP ALA TRP ALA HIS GLN GLU
SEQRES 43 A 663 GLY THR HIS PRO LYS ASP ARG ASN VAL GLU LYS LEU GLN
SEQRES 44 A 663 VAL LEU LEU ASN CYS MET THR GLU ILE TYR TYR GLN PHE
SEQRES 45 A 663 LYS LYS ASP LYS ALA GLU ARG ARG LEU ALA TYR ASN GLU
SEQRES 46 A 663 GLU GLN ILE HIS LYS PHE ASP LYS GLN LYS LEU TYR TYR
SEQRES 47 A 663 HIS ALA THR LYS ALA MET THR HIS PHE THR ASP GLU CYS
SEQRES 48 A 663 VAL LYS LYS TYR GLU ALA PHE LEU ASN LYS SER GLU GLU
SEQRES 49 A 663 TRP ILE ARG LYS MET LEU HIS LEU ARG LYS GLN LEU LEU
SEQRES 50 A 663 SER LEU THR ASN GLN CYS PHE ASP ILE GLU GLU GLU VAL
SEQRES 51 A 663 SER LYS TYR GLN GLU TYR THR ASN GLU LEU GLN GLU THR
HET BX7 A 701 68
HET HG A 702 1
HET HG A 703 1
HET HG A 704 1
HET HG A 705 1
HET HG A 706 1
HET CL A 707 1
HETNAM BX7 N-(3-{[5-IODO-4-({3-[(THIOPHEN-2-YLCARBONYL)
HETNAM 2 BX7 AMINO]PROPYL}AMINO)PYRIMIDIN-2-YL]AMINO}PHENYL)
HETNAM 3 BX7 PYRROLIDINE-1-CARBOXAMIDE
HETNAM HG MERCURY (II) ION
HETNAM CL CHLORIDE ION
FORMUL 2 BX7 C23 H26 I N7 O2 S
FORMUL 3 HG 5(HG 2+)
FORMUL 8 CL CL 1-
HELIX 1 1 VAL A 49 LEU A 62 1 14
HELIX 2 2 LEU A 94 GLU A 100 1 7
HELIX 3 3 PRO A 101 ALA A 104 5 4
HELIX 4 4 PRO A 108 ASN A 129 1 22
HELIX 5 5 THR A 201 GLY A 217 1 17
HELIX 6 6 ASN A 230 GLY A 240 1 11
HELIX 7 7 SER A 270 LEU A 285 1 16
HELIX 8 8 ASP A 288 CYS A 292 5 5
HELIX 9 9 GLY A 294 HIS A 307 1 14
HELIX 10 10 THR A 331 LYS A 344 1 14
HELIX 11 11 ILE A 346 GLN A 350 5 5
HELIX 12 12 LEU A 366 PHE A 370 5 5
HELIX 13 13 ASP A 407 CYS A 471 1 65
HELIX 14 14 ILE A 472 LYS A 480 1 9
HELIX 15 15 ALA A 493 SER A 527 1 35
HELIX 16 16 ALA A 535 GLU A 540 1 6
HELIX 17 17 HIS A 543 ASP A 546 5 4
HELIX 18 18 ARG A 547 GLU A 572 1 26
HELIX 19 19 ALA A 576 GLU A 604 1 29
HELIX 20 20 GLU A 604 SER A 645 1 42
SHEET 1 A 4 MET A 1 SER A 3 0
SHEET 2 A 4 HIS A 7 LEU A 10 -1 O TRP A 9 N GLN A 2
SHEET 3 A 4 ALA A 21 HIS A 28 -1 O ARG A 27 N LEU A 8
SHEET 4 A 4 ILE A 14 GLN A 17 -1 N LEU A 15 O VAL A 23
SHEET 1 B 6 MET A 1 SER A 3 0
SHEET 2 B 6 HIS A 7 LEU A 10 -1 O TRP A 9 N GLN A 2
SHEET 3 B 6 ALA A 21 HIS A 28 -1 O ARG A 27 N LEU A 8
SHEET 4 B 6 LEU A 34 PHE A 40 -1 O ILE A 37 N PHE A 24
SHEET 5 B 6 LYS A 82 MET A 86 -1 O MET A 86 N ALA A 36
SHEET 6 B 6 LEU A 70 GLU A 75 -1 N GLU A 74 O VAL A 83
SHEET 1 C 3 GLY A 92 SER A 93 0
SHEET 2 C 3 ILE A 141 ILE A 145 -1 O ARG A 143 N GLY A 92
SHEET 3 C 3 SER A 151 LEU A 155 -1 O VAL A 152 N VAL A 144
SHEET 1 D 3 PHE A 221 ARG A 222 0
SHEET 2 D 3 SER A 247 GLN A 250 1 O GLN A 250 N ARG A 222
SHEET 3 D 3 ILE A 257 SER A 260 -1 O ASP A 258 N VAL A 249
SHEET 1 E 5 THR A 320 ILE A 326 0
SHEET 2 E 5 MET A 309 SER A 315 -1 N VAL A 313 O HIS A 322
SHEET 3 E 5 ILE A 379 VAL A 382 1 O ILE A 379 N PHE A 314
SHEET 4 E 5 GLU A 351 TYR A 354 -1 N ILE A 353 O PHE A 380
SHEET 5 E 5 ARG A 357 ARG A 358 -1 O ARG A 357 N TYR A 354
LINK SG CYS A 91 HG HG A 706 1555 1555 3.17
LINK SG CYS A 423 HG HG A 703 1555 1555 3.38
LINK SG CYS A 426 HG HG A 704 1555 1555 3.17
LINK SG CYS A 471 HG HG A 702 1555 1555 3.20
LINK SG CYS A 558 HG HG A 705 1555 1555 4.21
SITE 1 AC1 16 LEU A 15 GLY A 18 VAL A 23 ALA A 36
SITE 2 AC1 16 LYS A 38 MET A 86 GLU A 87 PHE A 88
SITE 3 AC1 16 CYS A 89 PRO A 90 GLY A 92 THR A 96
SITE 4 AC1 16 MET A 142 THR A 156 ASP A 157 CL A 707
SITE 1 AC2 4 PHE A 470 CYS A 471 LYS A 477 GLN A 648
SITE 1 AC3 2 CYS A 423 HG A 704
SITE 1 AC4 3 CYS A 426 ARG A 427 HG A 703
SITE 1 AC5 1 CYS A 558
SITE 1 AC6 1 CYS A 91
SITE 1 AC7 4 LYS A 38 MET A 86 THR A 156 BX7 A 701
CRYST1 141.320 141.320 85.421 90.00 90.00 120.00 P 32 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007076 0.004085 0.000000 0.00000
SCALE2 0.000000 0.008171 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011707 0.00000