HEADER OXIDOREDUCTASE 02-JAN-13 4IM7 TITLE CRYSTAL STRUCTURE OF FRUCTURONATE REDUCTASE (YDFI) FROM E. COLI CFT073 TITLE 2 (EFI TARGET EFI-506389) COMPLEXED WITH NADH AND D-MANNONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL OXIDOREDUCTASE YDFI; COMPND 3 CHAIN: A; COMPND 4 EC: 1.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 199310; SOURCE 4 STRAIN: CFT073; SOURCE 5 GENE: C1968, YDFI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15 KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR T.LUKK,D.WICHELECKI,H.J.IMKER,J.A.GERLT,S.K.NAIR REVDAT 3 28-FEB-24 4IM7 1 REMARK SEQADV REVDAT 2 12-NOV-14 4IM7 1 KEYWDS REVDAT 1 23-JAN-13 4IM7 0 JRNL AUTH S.WICHELECKI,T.LUKK,H.J.IMKER,S.K.NAIR,J.A.GERLT JRNL TITL CRYSTAL STRUCTURE OF FRUCTURONATE REDUCTASE (YDFI) FROM E. JRNL TITL 2 COLI CFT073 (EFI TARGET EFI-506389) COMPLEXED WITH NADH AND JRNL TITL 3 D-MANNONATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5547 - 5.0622 1.00 2867 150 0.1579 0.1601 REMARK 3 2 5.0622 - 4.0212 1.00 2735 144 0.1190 0.1323 REMARK 3 3 4.0212 - 3.5138 1.00 2727 144 0.1309 0.1494 REMARK 3 4 3.5138 - 3.1930 1.00 2690 142 0.1481 0.1539 REMARK 3 5 3.1930 - 2.9643 1.00 2705 142 0.1557 0.1653 REMARK 3 6 2.9643 - 2.7897 1.00 2673 141 0.1622 0.1912 REMARK 3 7 2.7897 - 2.6501 1.00 2675 140 0.1486 0.1780 REMARK 3 8 2.6501 - 2.5348 1.00 2665 141 0.1460 0.1644 REMARK 3 9 2.5348 - 2.4373 1.00 2671 140 0.1421 0.1757 REMARK 3 10 2.4373 - 2.3532 1.00 2648 140 0.1416 0.1790 REMARK 3 11 2.3532 - 2.2796 1.00 2688 141 0.1387 0.1843 REMARK 3 12 2.2796 - 2.2145 1.00 2642 139 0.1404 0.1930 REMARK 3 13 2.2145 - 2.1562 1.00 2648 139 0.1440 0.1731 REMARK 3 14 2.1562 - 2.1036 1.00 2634 139 0.1459 0.1979 REMARK 3 15 2.1036 - 2.0558 1.00 2636 139 0.1593 0.1867 REMARK 3 16 2.0558 - 2.0121 1.00 2660 140 0.1676 0.2108 REMARK 3 17 2.0121 - 1.9718 1.00 2645 139 0.1871 0.2495 REMARK 3 18 1.9718 - 1.9346 1.00 2639 139 0.1986 0.2440 REMARK 3 19 1.9346 - 1.9001 1.00 2666 140 0.2092 0.2514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 31.40 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08250 REMARK 3 B22 (A**2) : -0.08250 REMARK 3 B33 (A**2) : 0.16500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3914 REMARK 3 ANGLE : 1.105 5338 REMARK 3 CHIRALITY : 0.072 605 REMARK 3 PLANARITY : 0.004 684 REMARK 3 DIHEDRAL : 15.000 1417 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 33.4822 15.9306 15.1891 REMARK 3 T TENSOR REMARK 3 T11: 0.0547 T22: 0.1041 REMARK 3 T33: 0.0860 T12: 0.0034 REMARK 3 T13: -0.0065 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.0278 L22: 0.5388 REMARK 3 L33: 0.6489 L12: 0.0142 REMARK 3 L13: -0.0325 L23: -0.3668 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.0090 S13: 0.0071 REMARK 3 S21: -0.0505 S22: 0.0575 S23: 0.0408 REMARK 3 S31: 0.0631 S32: -0.0376 S33: 0.0085 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53597 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 11.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION WAS AT 10 MG/ML REMARK 280 CONTAINING 20 MM TRIS (PH 7.5) AND 100 MM NACL. MOTHER LIQUEUR REMARK 280 CONTAINED 1.7 M AMMONIUM SULFATE, 0.085 M HEPES (PH 7.5), 1.7% REMARK 280 PEG 400 AND 15% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.33333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.66667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.66667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 HIS A 1 REMARK 465 MET A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 296 CB SER A 296 OG -0.088 REMARK 500 SER A 391 CB SER A 391 OG -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 37 -90.16 -115.85 REMARK 500 THR A 126 156.11 69.11 REMARK 500 ASP A 205 105.86 -171.34 REMARK 500 ARG A 225 126.74 -172.19 REMARK 500 MET A 379 -41.00 -130.06 REMARK 500 PHE A 393 41.99 -142.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS2 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-506389 RELATED DB: TARGETTRACK DBREF 4IM7 A 2 487 UNP Q8FHD0 Q8FHD0_ECOL6 1 486 SEQADV 4IM7 MET A -18 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 GLY A -17 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 SER A -16 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 SER A -15 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 HIS A -14 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 HIS A -13 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 HIS A -12 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 HIS A -11 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 HIS A -10 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 HIS A -9 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 SER A -8 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 SER A -7 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 GLY A -6 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 LEU A -5 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 VAL A -4 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 PRO A -3 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 ARG A -2 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 GLY A -1 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 SER A 0 UNP Q8FHD0 EXPRESSION TAG SEQADV 4IM7 HIS A 1 UNP Q8FHD0 EXPRESSION TAG SEQRES 1 A 506 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 506 LEU VAL PRO ARG GLY SER HIS MET GLY ASN HIS LEU LEU SEQRES 3 A 506 SER ALA LYS ALA THR LEU PRO VAL TYR ASP ARG ASN ASN SEQRES 4 A 506 LEU ALA PRO ARG ILE VAL HIS LEU GLY PHE GLY ALA PHE SEQRES 5 A 506 HIS ARG ALA HIS GLN GLY VAL TYR ALA ASP ILE LEU ALA SEQRES 6 A 506 THR GLU HIS PHE SER ASP TRP GLY TYR TYR GLU VAL ASN SEQRES 7 A 506 LEU ILE GLY GLY GLU GLN GLN ILE ALA ASP LEU GLN GLN SEQRES 8 A 506 GLN ASP ASN LEU TYR THR VAL ALA GLU MET SER ALA ASP SEQRES 9 A 506 ALA TRP THR ALA ARG VAL VAL GLY VAL VAL LYS LYS ALA SEQRES 10 A 506 LEU HIS VAL GLN ILE ASP GLY LEU GLU THR VAL LEU ALA SEQRES 11 A 506 ALA MET CYS GLU PRO GLN ILE ALA ILE VAL SER LEU THR SEQRES 12 A 506 ILE THR GLU LYS GLY TYR PHE HIS SER PRO ALA THR GLY SEQRES 13 A 506 GLN LEU MET LEU ASP HIS PRO MET VAL VAL ALA ASP VAL SEQRES 14 A 506 GLN ASN PRO HIS GLN PRO LYS THR ALA THR GLY VAL ILE SEQRES 15 A 506 VAL GLU ALA LEU ALA ARG ARG LYS ALA ALA GLY LEU PRO SEQRES 16 A 506 ALA PHE THR VAL MET SER CYS ASP ASN MET PRO GLU ASN SEQRES 17 A 506 GLY HIS VAL MET ARG ASP VAL VAL THR SER TYR ALA GLN SEQRES 18 A 506 ALA ILE ASP VAL LYS LEU ALA GLN TRP ILE GLU ASP ASN SEQRES 19 A 506 VAL THR PHE PRO SER THR MET VAL ASP ARG ILE VAL PRO SEQRES 20 A 506 ALA VAL THR GLU ASP THR LEU ALA LYS ILE GLU GLN LEU SEQRES 21 A 506 THR GLY VAL ARG ASP ALA ALA GLY VAL ALA CYS GLU PRO SEQRES 22 A 506 PHE ARG GLN TRP VAL ILE GLU ASP ASN PHE VAL ALA GLY SEQRES 23 A 506 ARG PRO GLU TRP GLU LYS ALA GLY ALA GLU LEU VAL SER SEQRES 24 A 506 ASP VAL LEU PRO TYR GLU GLU MET LYS LEU ARG MET LEU SEQRES 25 A 506 ASN GLY SER HIS SER PHE LEU ALA TYR LEU GLY TYR LEU SEQRES 26 A 506 ALA GLY TYR GLN HIS ILE ASN ASP CYS MET GLU ASP GLU SEQRES 27 A 506 HIS TYR ARG HIS ALA ALA TYR THR LEU MET LEU GLN GLU SEQRES 28 A 506 GLN ALA PRO THR LEU LYS VAL GLN GLY VAL ASP LEU GLN SEQRES 29 A 506 ASP TYR ALA ASN ARG LEU ILE GLU ARG TYR SER ASN PRO SEQRES 30 A 506 ALA LEU ARG HIS ARG THR TRP GLN ILE ALA MET ASP GLY SEQRES 31 A 506 SER GLN LYS LEU PRO GLN ARG MET LEU ASP SER VAL ARG SEQRES 32 A 506 TRP HIS LEU ALA HIS ASP SER LYS PHE ASP LEU LEU ALA SEQRES 33 A 506 LEU GLY VAL ALA GLY TRP MET ARG TYR VAL GLY GLY VAL SEQRES 34 A 506 ASP GLU GLN GLY ASN PRO ILE GLU ILE SER ASP PRO LEU SEQRES 35 A 506 LEU PRO VAL ILE GLN LYS ALA VAL GLN SER SER ALA GLU SEQRES 36 A 506 GLY THR ALA ARG VAL GLN SER LEU LEU ALA ILE LYS ALA SEQRES 37 A 506 ILE PHE GLY ASP ASP LEU PRO GLY ASN SER LEU PHE THR SEQRES 38 A 506 THR LYS VAL THR GLU ALA TYR LEU SER LEU LEU ALA HIS SEQRES 39 A 506 GLY ALA LYS ALA THR VAL ALA LYS TYR SER VAL LYS HET CS2 A 501 13 HET NAI A 502 44 HET SO4 A 503 5 HETNAM CS2 D-MANNONIC ACID HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETSYN CS2 D-MANNONATE HETSYN NAI NADH FORMUL 2 CS2 C6 H12 O7 FORMUL 3 NAI C21 H29 N7 O14 P2 FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *471(H2 O) HELIX 1 1 HIS A 5 ALA A 9 5 5 HELIX 2 2 ASP A 17 LEU A 21 5 5 HELIX 3 3 GLY A 31 HIS A 37 1 7 HELIX 4 4 HIS A 37 HIS A 49 1 13 HELIX 5 5 GLY A 63 GLN A 72 1 10 HELIX 6 6 GLY A 105 CYS A 114 1 10 HELIX 7 7 THR A 126 PHE A 131 5 6 HELIX 8 8 HIS A 143 ASN A 152 1 10 HELIX 9 9 THR A 158 ALA A 173 1 16 HELIX 10 10 GLU A 188 ASP A 205 1 18 HELIX 11 11 ASP A 205 VAL A 216 1 12 HELIX 12 12 THR A 231 GLY A 243 1 13 HELIX 13 13 GLU A 270 GLY A 275 5 6 HELIX 14 14 VAL A 282 LEU A 293 1 12 HELIX 15 15 LEU A 293 ALA A 307 1 15 HELIX 16 16 HIS A 311 MET A 316 1 6 HELIX 17 17 ASP A 318 GLU A 332 1 15 HELIX 18 18 GLN A 333 LEU A 337 5 5 HELIX 19 19 ASP A 343 SER A 356 1 14 HELIX 20 20 ARG A 363 MET A 369 1 7 HELIX 21 21 ASP A 370 MET A 379 1 10 HELIX 22 22 MET A 379 HIS A 389 1 11 HELIX 23 23 PHE A 393 VAL A 407 1 15 HELIX 24 24 LEU A 423 SER A 433 1 11 HELIX 25 25 GLY A 437 ALA A 446 1 10 HELIX 26 26 ILE A 447 GLY A 452 1 6 HELIX 27 27 ASP A 454 GLY A 457 5 4 HELIX 28 28 ASN A 458 LYS A 487 1 30 SHEET 1 A 5 VAL A 95 HIS A 100 0 SHEET 2 A 5 TRP A 53 ASN A 59 1 N GLU A 57 O LEU A 99 SHEET 3 A 5 ALA A 22 LEU A 28 1 N ALA A 22 O GLY A 54 SHEET 4 A 5 ILE A 120 LEU A 123 1 O SER A 122 N LEU A 28 SHEET 5 A 5 THR A 179 SER A 182 1 O MET A 181 N VAL A 121 SHEET 1 B 3 TRP A 87 VAL A 92 0 SHEET 2 B 3 TYR A 77 MET A 82 -1 N VAL A 79 O ARG A 90 SHEET 3 B 3 VAL A 250 CYS A 252 1 O VAL A 250 N ALA A 80 SHEET 1 C 3 THR A 221 ASP A 224 0 SHEET 2 C 3 GLN A 257 GLU A 261 -1 O VAL A 259 N MET A 222 SHEET 3 C 3 GLU A 277 VAL A 279 1 O GLU A 277 N ILE A 260 SITE 1 AC1 13 ASN A 185 ASP A 224 ARG A 225 LYS A 289 SITE 2 AC1 13 ASN A 294 HIS A 297 HIS A 362 LYS A 374 SITE 3 AC1 13 ARG A 378 NAI A 502 HOH A 698 HOH A 713 SITE 4 AC1 13 HOH A 920 SITE 1 AC2 28 GLY A 29 PHE A 30 GLY A 31 ALA A 32 SITE 2 AC2 28 PHE A 33 ASN A 59 ILE A 61 GLY A 62 SITE 3 AC2 28 THR A 124 ILE A 125 THR A 126 GLY A 129 SITE 4 AC2 28 ASP A 184 ASN A 185 VAL A 223 ARG A 225 SITE 5 AC2 28 VAL A 227 CS2 A 501 HOH A 614 HOH A 620 SITE 6 AC2 28 HOH A 627 HOH A 645 HOH A 710 HOH A 734 SITE 7 AC2 28 HOH A 771 HOH A 822 HOH A 933 HOH A 940 SITE 1 AC3 5 TYR A 305 GLN A 310 ARG A 363 HOH A 619 SITE 2 AC3 5 HOH A1039 CRYST1 92.490 92.490 136.000 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010812 0.006242 0.000000 0.00000 SCALE2 0.000000 0.012485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007353 0.00000