HEADER TRANSFERASE 02-JAN-13 4IM9 TITLE CYSTAL STRUCTURE OF DNAG PRIMASE C-TERMINAL DOMAIN FROM VIBRIO TITLE 2 CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: PRIMASE C-TERMINAL DOMAIN; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 345073; SOURCE 4 STRAIN: O395; SOURCE 5 GENE: C-TERMINAL DOMAIN, DNAG, PRIMASE, VC395_0535; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28(B) KEYWDS HELICASE-PRIMASE COMPLEX, DNA REPLICATION, HAIR PIN HELIX, KEYWDS 2 TRANSFERASE, HELICASE BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.A.ABDUL REHMAN,K.F.TARIQUE,S.GOURINATH REVDAT 1 07-MAY-14 4IM9 0 JRNL AUTH S.A.ABDUL REHMAN,K.F.TARIQUE,S.GOURINATH JRNL TITL CYSTAL STRUCTURE OF DNAG PRIMASE C-TERMINAL DOMAIN FROM JRNL TITL 2 VIBRIO CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1546 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : -1.59000 REMARK 3 B33 (A**2) : 0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.315 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.048 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3293 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4455 ; 1.552 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 5.739 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;35.830 ;25.290 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;18.882 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;24.546 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2410 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4IM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-13. REMARK 100 THE RCSB ID CODE IS RCSB076929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25046 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 66.326 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE TRIHYDRATE (PH REMARK 280 6.5), 0.2 M MGCL2, 30% W/V PEG 3350 , VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.20600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.32650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.88950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.32650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.20600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.88950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 ARG A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 HIS A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 LYS A 10 REMARK 465 ARG A 11 REMARK 465 ALA A 144 REMARK 465 LEU A 145 REMARK 465 GLU A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 ASN B 1 REMARK 465 ARG B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 PRO B 5 REMARK 465 HIS B 6 REMARK 465 LYS B 7 REMARK 465 ALA B 8 REMARK 465 ILE B 9 REMARK 465 LYS B 10 REMARK 465 VAL B 90 REMARK 465 GLU B 91 REMARK 465 ASP B 92 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 ASN C 1 REMARK 465 ARG C 2 REMARK 465 PRO C 3 REMARK 465 ALA C 4 REMARK 465 PRO C 5 REMARK 465 HIS C 6 REMARK 465 LYS C 7 REMARK 465 ALA C 8 REMARK 465 ILE C 9 REMARK 465 LYS C 10 REMARK 465 ARG C 11 REMARK 465 GLU C 146 REMARK 465 HIS C 147 REMARK 465 HIS C 148 REMARK 465 HIS C 149 REMARK 465 HIS C 150 REMARK 465 HIS C 151 REMARK 465 HIS C 152 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR C 12 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 142 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU B 142 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 VAL C 90 CB - CA - C ANGL. DEV. = -24.8 DEGREES REMARK 500 GLU C 91 N - CA - CB ANGL. DEV. = -16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 27 -8.85 -58.01 REMARK 500 SER B 73 149.94 -175.91 REMARK 500 ASN B 75 54.37 -106.66 REMARK 500 TRP B 85 109.89 -35.87 REMARK 500 PRO B 88 147.36 -36.07 REMARK 500 SER B 123 -63.71 -99.13 REMARK 500 ASP C 72 -3.19 58.20 REMARK 500 ALA C 83 -18.23 -46.10 REMARK 500 TRP C 85 -128.79 -172.54 REMARK 500 LEU C 89 -160.50 -66.02 REMARK 500 VAL C 90 85.47 -69.96 REMARK 500 ASP C 92 64.20 -69.91 REMARK 500 LEU C 142 -36.19 -26.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP C 85 GLU C 86 -146.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU C 91 46.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 4IM9 A 1 144 UNP C3LX44 C3LX44_VIBC3 444 587 DBREF 4IM9 B 1 144 UNP C3LX44 C3LX44_VIBC3 444 587 DBREF 4IM9 C 1 144 UNP C3LX44 C3LX44_VIBC3 444 587 SEQADV 4IM9 LEU A 145 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 GLU A 146 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS A 147 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS A 148 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS A 149 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS A 150 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS A 151 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS A 152 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 LEU B 145 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 GLU B 146 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS B 147 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS B 148 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS B 149 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS B 150 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS B 151 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS B 152 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 LEU C 145 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 GLU C 146 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS C 147 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS C 148 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS C 149 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS C 150 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS C 151 UNP C3LX44 EXPRESSION TAG SEQADV 4IM9 HIS C 152 UNP C3LX44 EXPRESSION TAG SEQRES 1 A 152 ASN ARG PRO ALA PRO HIS LYS ALA ILE LYS ARG THR PRO SEQRES 2 A 152 MSE ARG ASP VAL ILE ALA LEU LEU ILE GLN ASN PRO SER SEQRES 3 A 152 TYR ALA GLU LEU VAL PRO ASP LEU ALA SER VAL ARG HIS SEQRES 4 A 152 LEU MSE ILE PRO GLY LEU ASP THR PHE SER GLU VAL LEU SEQRES 5 A 152 GLU LYS CYS ARG GLN TYR PRO HIS ILE THR THR GLY GLN SEQRES 6 A 152 LEU LEU GLU HIS TRP ARG ASP SER LYS ASN GLU THR LEU SEQRES 7 A 152 LEU SER ARG LEU ALA SER TRP GLU ILE PRO LEU VAL GLU SEQRES 8 A 152 ASP ASN GLN GLU GLU LEU PHE LEU ASP SER LEU ASP LYS SEQRES 9 A 152 ILE LEU ALA GLN CYS VAL GLU LYS GLN ILE GLU ASN LEU SEQRES 10 A 152 GLN ALA LYS GLU ARG SER VAL GLY LEU SER THR GLU GLU SEQRES 11 A 152 LYS ARG GLU LEU GLN ASP LEU ILE LEU LYS GLY LEU LYS SEQRES 12 A 152 ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 152 ASN ARG PRO ALA PRO HIS LYS ALA ILE LYS ARG THR PRO SEQRES 2 B 152 MSE ARG ASP VAL ILE ALA LEU LEU ILE GLN ASN PRO SER SEQRES 3 B 152 TYR ALA GLU LEU VAL PRO ASP LEU ALA SER VAL ARG HIS SEQRES 4 B 152 LEU MSE ILE PRO GLY LEU ASP THR PHE SER GLU VAL LEU SEQRES 5 B 152 GLU LYS CYS ARG GLN TYR PRO HIS ILE THR THR GLY GLN SEQRES 6 B 152 LEU LEU GLU HIS TRP ARG ASP SER LYS ASN GLU THR LEU SEQRES 7 B 152 LEU SER ARG LEU ALA SER TRP GLU ILE PRO LEU VAL GLU SEQRES 8 B 152 ASP ASN GLN GLU GLU LEU PHE LEU ASP SER LEU ASP LYS SEQRES 9 B 152 ILE LEU ALA GLN CYS VAL GLU LYS GLN ILE GLU ASN LEU SEQRES 10 B 152 GLN ALA LYS GLU ARG SER VAL GLY LEU SER THR GLU GLU SEQRES 11 B 152 LYS ARG GLU LEU GLN ASP LEU ILE LEU LYS GLY LEU LYS SEQRES 12 B 152 ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 152 ASN ARG PRO ALA PRO HIS LYS ALA ILE LYS ARG THR PRO SEQRES 2 C 152 MSE ARG ASP VAL ILE ALA LEU LEU ILE GLN ASN PRO SER SEQRES 3 C 152 TYR ALA GLU LEU VAL PRO ASP LEU ALA SER VAL ARG HIS SEQRES 4 C 152 LEU MSE ILE PRO GLY LEU ASP THR PHE SER GLU VAL LEU SEQRES 5 C 152 GLU LYS CYS ARG GLN TYR PRO HIS ILE THR THR GLY GLN SEQRES 6 C 152 LEU LEU GLU HIS TRP ARG ASP SER LYS ASN GLU THR LEU SEQRES 7 C 152 LEU SER ARG LEU ALA SER TRP GLU ILE PRO LEU VAL GLU SEQRES 8 C 152 ASP ASN GLN GLU GLU LEU PHE LEU ASP SER LEU ASP LYS SEQRES 9 C 152 ILE LEU ALA GLN CYS VAL GLU LYS GLN ILE GLU ASN LEU SEQRES 10 C 152 GLN ALA LYS GLU ARG SER VAL GLY LEU SER THR GLU GLU SEQRES 11 C 152 LYS ARG GLU LEU GLN ASP LEU ILE LEU LYS GLY LEU LYS SEQRES 12 C 152 ALA LEU GLU HIS HIS HIS HIS HIS HIS MODRES 4IM9 MSE A 14 MET SELENOMETHIONINE MODRES 4IM9 MSE A 41 MET SELENOMETHIONINE MODRES 4IM9 MSE B 14 MET SELENOMETHIONINE MODRES 4IM9 MSE B 41 MET SELENOMETHIONINE MODRES 4IM9 MSE C 14 MET SELENOMETHIONINE MODRES 4IM9 MSE C 41 MET SELENOMETHIONINE HET MSE A 14 8 HET MSE A 41 8 HET MSE B 14 8 HET MSE B 41 16 HET MSE C 14 8 HET MSE C 41 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 4 HOH *43(H2 O) HELIX 1 1 THR A 12 ASN A 24 1 13 HELIX 2 2 PRO A 25 VAL A 31 5 7 HELIX 3 3 GLY A 44 TYR A 58 1 15 HELIX 4 4 THR A 62 GLU A 68 1 7 HELIX 5 5 HIS A 69 ARG A 71 5 3 HELIX 6 6 ASN A 75 ALA A 83 1 9 HELIX 7 7 ASN A 93 VAL A 124 1 32 HELIX 8 8 SER A 127 GLY A 141 1 15 HELIX 9 9 THR B 12 ASN B 24 1 13 HELIX 10 10 PRO B 25 VAL B 31 5 7 HELIX 11 11 GLY B 44 TYR B 58 1 15 HELIX 12 12 THR B 62 HIS B 69 1 8 HELIX 13 13 ASN B 75 TRP B 85 1 11 HELIX 14 14 GLN B 94 VAL B 124 1 31 HELIX 15 15 SER B 127 GLY B 141 1 15 HELIX 16 16 LEU B 142 LEU B 145 5 4 HELIX 17 17 PRO C 13 ASN C 24 1 12 HELIX 18 18 PRO C 25 VAL C 31 5 7 HELIX 19 19 LEU C 34 ARG C 38 5 5 HELIX 20 20 GLY C 44 TYR C 58 1 15 HELIX 21 21 THR C 62 HIS C 69 1 8 HELIX 22 22 ASN C 75 ALA C 83 1 9 HELIX 23 23 ASN C 93 VAL C 124 1 32 HELIX 24 24 SER C 127 GLY C 141 1 15 HELIX 25 25 LEU C 142 LEU C 145 5 4 LINK C PRO A 13 N MSE A 14 1555 1555 1.33 LINK C MSE A 14 N ARG A 15 1555 1555 1.34 LINK C LEU A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N ILE A 42 1555 1555 1.32 LINK C PRO B 13 N MSE B 14 1555 1555 1.33 LINK C MSE B 14 N ARG B 15 1555 1555 1.33 LINK C LEU B 40 N AMSE B 41 1555 1555 1.34 LINK C LEU B 40 N BMSE B 41 1555 1555 1.33 LINK C AMSE B 41 N ILE B 42 1555 1555 1.33 LINK C BMSE B 41 N ILE B 42 1555 1555 1.33 LINK C PRO C 13 N MSE C 14 1555 1555 1.34 LINK C MSE C 14 N ARG C 15 1555 1555 1.33 LINK C LEU C 40 N MSE C 41 1555 1555 1.33 LINK C MSE C 41 N ILE C 42 1555 1555 1.32 CISPEP 1 LEU A 142 LYS A 143 0 -4.73 CISPEP 2 LYS B 74 ASN B 75 0 16.41 CISPEP 3 PRO B 88 LEU B 89 0 2.64 CISPEP 4 THR C 12 PRO C 13 0 -23.83 CRYST1 68.412 73.779 132.653 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014617 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007538 0.00000