HEADER OXIDOREDUCTASE 03-JAN-13 4IMR TITLE CRYSTAL STRUCTURE OF 3-OXOACYL (ACYL-CARRIER-PROTEIN) REDUCTASE TITLE 2 (TARGET EFI-506442) FROM AGROBACTERIUM TUMEFACIENS C58 WITH NADP TITLE 3 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58 / ATCC 33970; SOURCE 5 GENE: FABG, ATU5465; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS OXIDOREDUCTASE, NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE, NADP, KEYWDS 2 STRUCTURAL GENOMICS, ENZYME INITIATIVE, EFI EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER, AUTHOR 3 N.F.AL OBAIDI,M.STEAD,J.LOVE,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION AUTHOR 4 INITIATIVE (EFI) REVDAT 3 20-SEP-23 4IMR 1 REMARK SEQADV REVDAT 2 24-JAN-18 4IMR 1 AUTHOR REVDAT 1 16-JAN-13 4IMR 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 W.D.ZENCHECK,H.J.IMKER,N.F.AL OBAIDI,M.STEAD,J.LOVE, JRNL AUTH 4 J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF 3-OXOACYL (ACYL-CARRIER-PROTEIN) JRNL TITL 2 REDUCTASE ATU5465 FROM AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.5 REMARK 3 NUMBER OF REFLECTIONS : 42648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1363 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -0.84000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.282 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3928 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5357 ; 1.419 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 5.521 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;39.914 ;23.896 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;13.997 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.560 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 629 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2939 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4IMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46926 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 200 DATA REDUNDANCY : 20.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.60 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4G81 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE, PH 6.5, 1M REMARK 280 SODIUM CITRATE TRIBASIC, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.76967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 205.53933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 154.15450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 256.92417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.38483 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 102.76967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 205.53933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 256.92417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 154.15450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.38483 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -43.95950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 76.14009 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.38483 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 151 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 101 135.08 -173.57 REMARK 500 ALA B 101 133.77 -173.39 REMARK 500 ASP B 204 74.35 -150.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-506442 RELATED DB: TARGETTRACK DBREF 4IMR A 1 253 UNP A9CL57 A9CL57_AGRT5 1 253 DBREF 4IMR B 1 253 UNP A9CL57 A9CL57_AGRT5 1 253 SEQADV 4IMR MET A -21 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS A -20 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS A -19 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS A -18 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS A -17 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS A -16 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS A -15 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR SER A -14 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR SER A -13 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR GLY A -12 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR VAL A -11 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR ASP A -10 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR LEU A -9 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR GLY A -8 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR THR A -7 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR GLU A -6 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR ASN A -5 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR LEU A -4 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR TYR A -3 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR PHE A -2 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR GLN A -1 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR SER A 0 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR MET B -21 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS B -20 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS B -19 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS B -18 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS B -17 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS B -16 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR HIS B -15 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR SER B -14 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR SER B -13 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR GLY B -12 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR VAL B -11 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR ASP B -10 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR LEU B -9 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR GLY B -8 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR THR B -7 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR GLU B -6 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR ASN B -5 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR LEU B -4 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR TYR B -3 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR PHE B -2 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR GLN B -1 UNP A9CL57 EXPRESSION TAG SEQADV 4IMR SER B 0 UNP A9CL57 EXPRESSION TAG SEQRES 1 A 275 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 275 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG LEU GLU SEQRES 3 A 275 THR ILE PHE GLY LEU ARG GLY ARG THR ALA LEU VAL THR SEQRES 4 A 275 GLY SER SER ARG GLY ILE GLY ALA ALA ILE ALA GLU GLY SEQRES 5 A 275 LEU ALA GLY ALA GLY ALA HIS VAL ILE LEU HIS GLY VAL SEQRES 6 A 275 LYS PRO GLY SER THR ALA ALA VAL GLN GLN ARG ILE ILE SEQRES 7 A 275 ALA SER GLY GLY THR ALA GLN GLU LEU ALA GLY ASP LEU SEQRES 8 A 275 SER GLU ALA GLY ALA GLY THR ASP LEU ILE GLU ARG ALA SEQRES 9 A 275 GLU ALA ILE ALA PRO VAL ASP ILE LEU VAL ILE ASN ALA SEQRES 10 A 275 SER ALA GLN ILE ASN ALA THR LEU SER ALA LEU THR PRO SEQRES 11 A 275 ASN ASP LEU ALA PHE GLN LEU ALA VAL ASN LEU GLY SER SEQRES 12 A 275 THR VAL ASP MET LEU GLN SER ALA LEU PRO LYS MET VAL SEQRES 13 A 275 ALA ARG LYS TRP GLY ARG VAL VAL SER ILE GLY SER ILE SEQRES 14 A 275 ASN GLN LEU ARG PRO LYS SER VAL VAL THR ALA TYR ALA SEQRES 15 A 275 ALA THR LYS ALA ALA GLN HIS ASN LEU ILE GLN SER GLN SEQRES 16 A 275 ALA ARG ASP PHE ALA GLY ASP ASN VAL LEU LEU ASN THR SEQRES 17 A 275 LEU ALA PRO GLY LEU VAL ASP THR ASP ARG ASN ALA ASP SEQRES 18 A 275 ARG ARG ALA GLN ASP PRO GLU GLY TRP ASP GLU TYR VAL SEQRES 19 A 275 ARG THR LEU ASN TRP MET GLY ARG ALA GLY ARG PRO GLU SEQRES 20 A 275 GLU MET VAL GLY ALA ALA LEU PHE LEU ALA SER GLU ALA SEQRES 21 A 275 CYS SER PHE MET THR GLY GLU THR ILE PHE LEU THR GLY SEQRES 22 A 275 GLY TYR SEQRES 1 B 275 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 275 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG LEU GLU SEQRES 3 B 275 THR ILE PHE GLY LEU ARG GLY ARG THR ALA LEU VAL THR SEQRES 4 B 275 GLY SER SER ARG GLY ILE GLY ALA ALA ILE ALA GLU GLY SEQRES 5 B 275 LEU ALA GLY ALA GLY ALA HIS VAL ILE LEU HIS GLY VAL SEQRES 6 B 275 LYS PRO GLY SER THR ALA ALA VAL GLN GLN ARG ILE ILE SEQRES 7 B 275 ALA SER GLY GLY THR ALA GLN GLU LEU ALA GLY ASP LEU SEQRES 8 B 275 SER GLU ALA GLY ALA GLY THR ASP LEU ILE GLU ARG ALA SEQRES 9 B 275 GLU ALA ILE ALA PRO VAL ASP ILE LEU VAL ILE ASN ALA SEQRES 10 B 275 SER ALA GLN ILE ASN ALA THR LEU SER ALA LEU THR PRO SEQRES 11 B 275 ASN ASP LEU ALA PHE GLN LEU ALA VAL ASN LEU GLY SER SEQRES 12 B 275 THR VAL ASP MET LEU GLN SER ALA LEU PRO LYS MET VAL SEQRES 13 B 275 ALA ARG LYS TRP GLY ARG VAL VAL SER ILE GLY SER ILE SEQRES 14 B 275 ASN GLN LEU ARG PRO LYS SER VAL VAL THR ALA TYR ALA SEQRES 15 B 275 ALA THR LYS ALA ALA GLN HIS ASN LEU ILE GLN SER GLN SEQRES 16 B 275 ALA ARG ASP PHE ALA GLY ASP ASN VAL LEU LEU ASN THR SEQRES 17 B 275 LEU ALA PRO GLY LEU VAL ASP THR ASP ARG ASN ALA ASP SEQRES 18 B 275 ARG ARG ALA GLN ASP PRO GLU GLY TRP ASP GLU TYR VAL SEQRES 19 B 275 ARG THR LEU ASN TRP MET GLY ARG ALA GLY ARG PRO GLU SEQRES 20 B 275 GLU MET VAL GLY ALA ALA LEU PHE LEU ALA SER GLU ALA SEQRES 21 B 275 CYS SER PHE MET THR GLY GLU THR ILE PHE LEU THR GLY SEQRES 22 B 275 GLY TYR HET NAP A 300 48 HET NAP B 301 48 HET UNL B 302 9 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM UNL UNKNOWN LIGAND HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 6 HOH *380(H2 O) HELIX 1 1 ARG A 2 GLY A 8 1 7 HELIX 2 2 ARG A 21 ALA A 34 1 14 HELIX 3 3 THR A 48 SER A 58 1 11 HELIX 4 4 GLY A 73 ALA A 86 1 14 HELIX 5 5 THR A 102 LEU A 106 5 5 HELIX 6 6 THR A 107 LEU A 119 1 13 HELIX 7 7 LEU A 119 LYS A 137 1 19 HELIX 8 8 SER A 146 LEU A 150 5 5 HELIX 9 9 LYS A 153 VAL A 155 5 3 HELIX 10 10 VAL A 156 ALA A 178 1 23 HELIX 11 11 THR A 194 ASP A 204 1 11 HELIX 12 12 ASP A 204 ASN A 216 1 13 HELIX 13 13 ARG A 223 GLU A 226 5 4 HELIX 14 14 MET A 227 SER A 236 1 10 HELIX 15 15 GLU A 237 SER A 240 5 4 HELIX 16 16 ARG B 2 GLY B 8 1 7 HELIX 17 17 ARG B 21 ALA B 34 1 14 HELIX 18 18 THR B 48 SER B 58 1 11 HELIX 19 19 GLY B 73 ALA B 86 1 14 HELIX 20 20 THR B 102 LEU B 106 5 5 HELIX 21 21 THR B 107 LEU B 119 1 13 HELIX 22 22 LEU B 119 ARG B 136 1 18 HELIX 23 23 SER B 146 LEU B 150 5 5 HELIX 24 24 LYS B 153 VAL B 155 5 3 HELIX 25 25 VAL B 156 ALA B 178 1 23 HELIX 26 26 THR B 194 ARG B 196 5 3 HELIX 27 27 ASN B 197 ASP B 204 1 8 HELIX 28 28 ASP B 204 ASN B 216 1 13 HELIX 29 29 ARG B 223 GLU B 226 5 4 HELIX 30 30 MET B 227 SER B 236 1 10 HELIX 31 31 GLU B 237 SER B 240 5 4 SHEET 1 A 7 ALA A 62 ALA A 66 0 SHEET 2 A 7 HIS A 37 GLY A 42 1 N LEU A 40 O GLN A 63 SHEET 3 A 7 THR A 13 VAL A 16 1 N ALA A 14 O ILE A 39 SHEET 4 A 7 ILE A 90 ILE A 93 1 O VAL A 92 N LEU A 15 SHEET 5 A 7 GLY A 139 ILE A 144 1 O ARG A 140 N LEU A 91 SHEET 6 A 7 VAL A 182 PRO A 189 1 O LEU A 187 N SER A 143 SHEET 7 A 7 THR A 246 LEU A 249 1 O ILE A 247 N ALA A 188 SHEET 1 B 7 ALA B 62 GLU B 64 0 SHEET 2 B 7 HIS B 37 LEU B 40 1 N LEU B 40 O GLN B 63 SHEET 3 B 7 THR B 13 VAL B 16 1 N ALA B 14 O ILE B 39 SHEET 4 B 7 ILE B 90 ILE B 93 1 O VAL B 92 N LEU B 15 SHEET 5 B 7 GLY B 139 ILE B 144 1 O ARG B 140 N LEU B 91 SHEET 6 B 7 VAL B 182 PRO B 189 1 O LEU B 187 N SER B 143 SHEET 7 B 7 THR B 246 LEU B 249 1 O ILE B 247 N ALA B 188 SITE 1 AC1 29 GLY A 18 SER A 20 ARG A 21 GLY A 22 SITE 2 AC1 29 ILE A 23 HIS A 41 VAL A 43 SER A 47 SITE 3 AC1 29 GLY A 67 ASP A 68 LEU A 69 ASN A 94 SITE 4 AC1 29 ALA A 95 SER A 96 ILE A 144 GLY A 145 SITE 5 AC1 29 TYR A 159 LYS A 163 PRO A 189 GLY A 190 SITE 6 AC1 29 VAL A 192 THR A 194 ARG A 196 HOH A 404 SITE 7 AC1 29 HOH A 439 HOH A 455 HOH A 500 HOH A 574 SITE 8 AC1 29 HOH B 482 SITE 1 AC2 32 GLY B 18 SER B 20 ARG B 21 GLY B 22 SITE 2 AC2 32 ILE B 23 HIS B 41 GLY B 42 VAL B 43 SITE 3 AC2 32 SER B 47 GLY B 67 ASP B 68 LEU B 69 SITE 4 AC2 32 ASN B 94 ALA B 95 SER B 96 ILE B 144 SITE 5 AC2 32 GLY B 145 TYR B 159 LYS B 163 PRO B 189 SITE 6 AC2 32 GLY B 190 VAL B 192 THR B 194 ARG B 196 SITE 7 AC2 32 HOH B 401 HOH B 430 HOH B 484 HOH B 492 SITE 8 AC2 32 HOH B 548 HOH B 559 HOH B 577 HOH B 589 CRYST1 87.919 87.919 308.309 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011374 0.006567 0.000000 0.00000 SCALE2 0.000000 0.013134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003243 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.579475 -0.735868 -0.350295 20.47884 1 MTRIX2 2 -0.740419 0.295732 0.603591 5.38462 1 MTRIX3 2 -0.340569 0.609131 -0.716221 13.28664 1