HEADER HYDROLASE/HYDROLASE INHIBITOR 03-JAN-13 4IMZ TITLE STRUCTURAL BASIS OF SUBSTRATE SPECIFICITY AND PROTEASE INHIBITION IN TITLE 2 NORWALK VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NORWALK VIRUS PROTEASE (UNP RESIDUES 1101-1281); COMPND 5 SYNONYM: PROTEIN P48, NTPASE, P41, PROTEIN P22, VIRAL GENOME-LINKED COMPND 6 PROTEIN, VPG, 3C-LIKE PROTEASE, 3CLPRO, CALICIVIRIN, RNA-DIRECTED RNA COMPND 7 POLYMERASE, RDRP; COMPND 8 EC: 3.6.1.15, 3.4.22.66, 2.7.7.48; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PEPTIDE INHIBITOR, SYC 10; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/1968/US; SOURCE 3 ORGANISM_COMMON: HU/NV/NV/1968/US; SOURCE 4 ORGANISM_TAXID: 524364; SOURCE 5 STRAIN: GI/HUMAN/UNITED STATES/NORWALK/1968; SOURCE 6 GENE: ORF1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.V.V.PRASAD,Z.MUHAXHIRI,L.DENG,S.SHANKER,B.SANKARAN,M.K.ESTES, AUTHOR 2 T.PALZKILL,Y.SONG REVDAT 2 10-APR-13 4IMZ 1 JRNL REVDAT 1 20-FEB-13 4IMZ 0 JRNL AUTH Z.MUHAXHIRI,L.DENG,S.SHANKER,B.SANKARAN,M.K.ESTES, JRNL AUTH 2 T.PALZKILL,Y.SONG,B.V.PRASAD JRNL TITL STRUCTURAL BASIS OF SUBSTRATE SPECIFICITY AND PROTEASE JRNL TITL 2 INHIBITION IN NORWALK VIRUS. JRNL REF J.VIROL. V. 87 4281 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23365454 JRNL DOI 10.1128/JVI.02869-12 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3920 - 3.5375 1.00 2878 147 0.1585 0.1697 REMARK 3 2 3.5375 - 2.8082 1.00 2718 138 0.1631 0.2061 REMARK 3 3 2.8082 - 2.4533 1.00 2660 151 0.1702 0.2054 REMARK 3 4 2.4533 - 2.2291 1.00 2638 163 0.1596 0.1864 REMARK 3 5 2.2291 - 2.0693 1.00 2660 137 0.1510 0.1938 REMARK 3 6 2.0693 - 1.9473 1.00 2630 130 0.1528 0.2029 REMARK 3 7 1.9473 - 1.8498 1.00 2622 149 0.1555 0.1853 REMARK 3 8 1.8498 - 1.7693 1.00 2590 156 0.1827 0.2184 REMARK 3 9 1.7693 - 1.7012 0.99 2607 120 0.2067 0.2785 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 45.56 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14110 REMARK 3 B22 (A**2) : 0.14110 REMARK 3 B33 (A**2) : -0.28220 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 1466 REMARK 3 ANGLE : 1.579 1936 REMARK 3 CHIRALITY : 0.102 215 REMARK 3 PLANARITY : 0.007 251 REMARK 3 DIHEDRAL : 14.576 514 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq -1:31) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6835 31.1250 -2.9713 REMARK 3 T TENSOR REMARK 3 T11: 0.0781 T22: 0.0822 REMARK 3 T33: 0.0686 T12: 0.0183 REMARK 3 T13: 0.0029 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.6612 L22: 0.8120 REMARK 3 L33: 0.3959 L12: -0.3667 REMARK 3 L13: -0.4874 L23: 0.2667 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.0240 S13: 0.0682 REMARK 3 S21: -0.0411 S22: 0.0195 S23: -0.1274 REMARK 3 S31: -0.0382 S32: 0.0562 S33: -0.0332 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 32:43) REMARK 3 ORIGIN FOR THE GROUP (A): 44.8852 41.7955 -7.2079 REMARK 3 T TENSOR REMARK 3 T11: 0.1246 T22: 0.1632 REMARK 3 T33: 0.2533 T12: -0.0672 REMARK 3 T13: 0.0709 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.7304 L22: 0.4363 REMARK 3 L33: 0.8283 L12: -0.3160 REMARK 3 L13: 0.0109 L23: -0.5028 REMARK 3 S TENSOR REMARK 3 S11: 0.0942 S12: -0.1588 S13: 0.3000 REMARK 3 S21: 0.0145 S22: -0.1180 S23: -0.2371 REMARK 3 S31: -0.3327 S32: 0.5151 S33: 0.2237 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 44:60) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7752 44.4193 -4.6527 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.1111 REMARK 3 T33: 0.1501 T12: -0.0034 REMARK 3 T13: 0.0270 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.6959 L22: 0.0797 REMARK 3 L33: 0.5738 L12: 0.1699 REMARK 3 L13: -0.4603 L23: -0.1585 REMARK 3 S TENSOR REMARK 3 S11: 0.1042 S12: 0.1041 S13: 0.2978 REMARK 3 S21: -0.0557 S22: 0.0787 S23: 0.0863 REMARK 3 S31: -0.1033 S32: -0.0014 S33: -0.1690 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 61:70) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7726 32.9061 -15.1298 REMARK 3 T TENSOR REMARK 3 T11: 0.1627 T22: 0.1378 REMARK 3 T33: 0.0734 T12: 0.0131 REMARK 3 T13: 0.0265 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.4631 L22: 1.2322 REMARK 3 L33: 0.2316 L12: -0.0346 REMARK 3 L13: 0.1806 L23: -0.5109 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: 0.3350 S13: -0.0666 REMARK 3 S21: -0.3730 S22: -0.0084 S23: -0.0184 REMARK 3 S31: -0.0765 S32: 0.0141 S33: 0.0776 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resseq 71:93) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6007 29.4594 4.0789 REMARK 3 T TENSOR REMARK 3 T11: 0.1060 T22: 0.0933 REMARK 3 T33: 0.0713 T12: 0.0191 REMARK 3 T13: -0.0006 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.2748 L22: 0.4076 REMARK 3 L33: 0.1278 L12: 0.0069 REMARK 3 L13: -0.0547 L23: 0.1730 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.0429 S13: 0.1299 REMARK 3 S21: 0.1390 S22: 0.0094 S23: -0.0347 REMARK 3 S31: 0.0582 S32: -0.0970 S33: 0.0121 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resseq 94:111) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4910 35.2090 12.7820 REMARK 3 T TENSOR REMARK 3 T11: 0.1137 T22: 0.0863 REMARK 3 T33: 0.0671 T12: 0.0163 REMARK 3 T13: 0.0328 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.1507 L22: 0.1379 REMARK 3 L33: 0.0463 L12: -0.0965 REMARK 3 L13: 0.0026 L23: -0.0584 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: -0.0384 S13: 0.0074 REMARK 3 S21: 0.1316 S22: -0.0073 S23: 0.0198 REMARK 3 S31: 0.0850 S32: 0.0656 S33: -0.3470 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resseq 112:160) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5847 32.2630 6.9691 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.0993 REMARK 3 T33: 0.0733 T12: 0.0112 REMARK 3 T13: 0.0127 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.3534 L22: 0.8390 REMARK 3 L33: 0.1445 L12: -0.1298 REMARK 3 L13: -0.0122 L23: 0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: -0.0033 S13: 0.0064 REMARK 3 S21: 0.1796 S22: 0.0040 S23: 0.1192 REMARK 3 S31: 0.0969 S32: 0.0245 S33: 0.0127 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'A' and (resseq 161:170) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2638 33.2055 16.2631 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.1603 REMARK 3 T33: 0.0795 T12: -0.0025 REMARK 3 T13: -0.0138 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.6904 L22: 0.8462 REMARK 3 L33: 0.8544 L12: 0.0997 REMARK 3 L13: 1.1340 L23: -0.2134 REMARK 3 S TENSOR REMARK 3 S11: 0.1463 S12: -0.3727 S13: -0.1541 REMARK 3 S21: 0.4502 S22: -0.0540 S23: -0.0851 REMARK 3 S31: 0.1277 S32: -0.0017 S33: 0.0113 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'A' and (resseq 171:181) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0364 46.1824 7.0213 REMARK 3 T TENSOR REMARK 3 T11: 0.2535 T22: 0.3330 REMARK 3 T33: 0.3395 T12: 0.0257 REMARK 3 T13: 0.0845 T23: -0.0590 REMARK 3 L TENSOR REMARK 3 L11: 0.2976 L22: 0.5691 REMARK 3 L33: 0.5403 L12: -0.2227 REMARK 3 L13: 0.0539 L23: -0.1335 REMARK 3 S TENSOR REMARK 3 S11: 0.1015 S12: -0.3224 S13: 0.1262 REMARK 3 S21: 0.4242 S22: -0.1372 S23: 0.6956 REMARK 3 S31: -0.0848 S32: -0.8874 S33: 0.0690 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-13. REMARK 100 THE RCSB ID CODE IS RCSB076955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR. LN2 REMARK 200 COOLED FIRST CRYSTAL, SAGITTAL REMARK 200 FOCUSING 2ND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25322 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1-0.3 M POTASSIUM THIOCYANATE AND REMARK 280 25-30% POLYETHYLENE GLYCOL MONOMETHYL ETHER 2,000 , PH 7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.08400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.04200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.56300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.52100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.60500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.08400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 17.04200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 8.52100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 25.56300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.60500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -8.52100 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE PEPTIDE INHIBITOR, SYC 10 IS OLIGOPEPTIDE, A MEMBER OF REMARK 400 INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: PEPTIDE INHIBITOR, SYC 10 REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 124 REMARK 465 ALA A 125 REMARK 465 ASN A 126 REMARK 465 ALA A 127 REMARK 465 LYS A 128 REMARK 465 GLY A 129 REMARK 465 MET A 130 REMARK 465 ASP A 131 REMARK 465 LEU A 132 REMARK 465 LEU A 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 123 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 421 O HOH A 469 1.96 REMARK 500 N GLY A 133 O HOH A 439 2.03 REMARK 500 NH1 ARG A 112 O HOH A 382 2.04 REMARK 500 O HOH A 386 O HOH A 393 2.10 REMARK 500 O HOH A 462 O HOH B 102 2.18 REMARK 500 O HOH A 379 O HOH A 420 2.18 REMARK 500 O HOH A 468 O HOH A 492 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 63 O HOH A 467 7554 1.97 REMARK 500 O HOH A 516 O HOH A 516 10665 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IMQ RELATED DB: PDB REMARK 900 RELATED ID: 4IN2 RELATED DB: PDB REMARK 900 RELATED ID: 4IRO RELATED DB: PDB REMARK 900 RELATED ID: 4INH RELATED DB: PDB DBREF 4IMZ A 1 181 UNP Q83883 POLG_NVN68 1101 1281 DBREF 4IMZ B 1 4 PDB 4IMZ 4IMZ 1 4 SEQADV 4IMZ ASP A -1 UNP Q83883 EXPRESSION TAG SEQADV 4IMZ LYS A 0 UNP Q83883 EXPRESSION TAG SEQRES 1 A 183 ASP LYS ALA PRO PRO THR LEU TRP SER ARG VAL THR LYS SEQRES 2 A 183 PHE GLY SER GLY TRP GLY PHE TRP VAL SER PRO THR VAL SEQRES 3 A 183 PHE ILE THR THR THR HIS VAL VAL PRO THR GLY VAL LYS SEQRES 4 A 183 GLU PHE PHE GLY GLU PRO LEU SER SER ILE ALA ILE HIS SEQRES 5 A 183 GLN ALA GLY GLU PHE THR GLN PHE ARG PHE SER LYS LYS SEQRES 6 A 183 MET ARG PRO ASP LEU THR GLY MET VAL LEU GLU GLU GLY SEQRES 7 A 183 CYS PRO GLU GLY THR VAL CYS SER VAL LEU ILE LYS ARG SEQRES 8 A 183 ASP SER GLY GLU LEU LEU PRO LEU ALA VAL ARG MET GLY SEQRES 9 A 183 ALA ILE ALA SER MET ARG ILE GLN GLY ARG LEU VAL HIS SEQRES 10 A 183 GLY GLN SER GLY MET LEU LEU THR GLY ALA ASN ALA LYS SEQRES 11 A 183 GLY MET ASP LEU GLY THR ILE PRO GLY ASP CYS GLY ALA SEQRES 12 A 183 PRO TYR VAL HIS LYS ARG GLY ASN ASP TRP VAL VAL CYS SEQRES 13 A 183 GLY VAL HIS ALA ALA ALA THR LYS SER GLY ASN THR VAL SEQRES 14 A 183 VAL CYS ALA VAL GLN ALA GLY GLU GLY GLU THR ALA LEU SEQRES 15 A 183 GLU SEQRES 1 B 4 PHQ LEU PHE 1HB HET PHQ B 1 10 HET 1HB B 4 11 HET SCN A 201 3 HET NA A 202 1 HET SCN A 203 3 HET SCN A 204 3 HET SCN A 205 3 HETNAM PHQ BENZYL CHLOROCARBONATE HETNAM 1HB (4S)-4-AMINO-5-HYDROXY-N,N-DIMETHYLPENTANAMIDE HETNAM SCN THIOCYANATE ION HETNAM NA SODIUM ION HETSYN 1HB N,N-DIMETHYL-L-GLUTAMINE ALDEHYDE, BOUND FORM FORMUL 2 PHQ C8 H7 CL O2 FORMUL 2 1HB C7 H16 N2 O2 FORMUL 3 SCN 4(C N S 1-) FORMUL 4 NA NA 1+ FORMUL 8 HOH *220(H2 O) HELIX 1 1 PRO A 2 ARG A 8 1 7 HELIX 2 2 HIS A 30 VAL A 32 5 3 HELIX 3 3 ILE A 135 CYS A 139 5 5 SHEET 1 A 5 VAL A 9 PHE A 12 0 SHEET 2 A 5 GLY A 15 TRP A 19 -1 O GLY A 17 N THR A 10 SHEET 3 A 5 VAL A 24 THR A 28 -1 O ILE A 26 N PHE A 18 SHEET 4 A 5 PHE A 55 PHE A 60 -1 O PHE A 58 N PHE A 25 SHEET 5 A 5 ILE A 47 ALA A 52 -1 N HIS A 50 O GLN A 57 SHEET 1 B 2 GLU A 38 PHE A 39 0 SHEET 2 B 2 GLU A 42 PRO A 43 -1 O GLU A 42 N PHE A 39 SHEET 1 C 8 VAL A 72 LEU A 73 0 SHEET 2 C 8 ASP A 150 ALA A 160 1 O VAL A 153 N VAL A 72 SHEET 3 C 8 THR A 166 ALA A 170 -1 O ALA A 170 N VAL A 156 SHEET 4 C 8 ARG A 112 LEU A 121 -1 N GLY A 119 O VAL A 167 SHEET 5 C 8 LEU A 94 ILE A 109 -1 N GLY A 102 O SER A 118 SHEET 6 C 8 VAL A 82 LYS A 88 -1 N ILE A 87 O LEU A 95 SHEET 7 C 8 PRO A 142 ARG A 147 -1 O VAL A 144 N SER A 84 SHEET 8 C 8 ASP A 150 ALA A 160 -1 O ASP A 150 N ARG A 147 LINK C1 PHQ B 1 N LEU B 2 1555 1555 1.28 LINK SG CYS A 139 C 1HB B 4 1555 1555 1.74 SITE 1 AC1 4 PRO A 2 THR A 4 LEU A 5 ARG A 8 SITE 1 AC2 1 LYS A 0 SITE 1 AC3 7 VAL A 82 SER A 84 HIS A 145 LYS A 146 SITE 2 AC3 7 HOH A 344 HOH A 366 HOH A 389 SITE 1 AC4 3 HIS A 50 GLN A 172 ALA A 173 SITE 1 AC5 3 LYS A 37 HOH A 369 HOH A 403 CRYST1 122.575 122.575 51.126 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008158 0.004710 0.000000 0.00000 SCALE2 0.000000 0.009420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019560 0.00000