HEADER HYDROLASE 04-JAN-13 4INJ TITLE CRYSTAL STRUCTURE OF THE S111A MUTANT OF MEMBER OF MCCF CLADE FROM TITLE 2 LISTERIA MONOCYTOGENES EGD-E WITH PRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMO1638 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 STRAIN: ATCC BAA-679 / EGD-E; SOURCE 5 GENE: LMO1638; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PMCSG7 KEYWDS CSGID, S66, STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY KEYWDS 2 AND INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 3 INFECTIOUS DISEASES, SERINE PEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,A.TIKHONOV,K.SEVERINOV,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 20-SEP-23 4INJ 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4INJ 1 REMARK REVDAT 1 20-FEB-13 4INJ 0 JRNL AUTH B.NOCEK,A.TIKHONOV,K.SEVERINOV,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE S111A MUTANT OF MEMBER OF MCCF JRNL TITL 2 CLADE FROM LISTERIA MONOCYTOGENES EGD-E WITH PRODUCT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 33087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1747 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2430 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62000 REMARK 3 B22 (A**2) : 1.62000 REMARK 3 B33 (A**2) : -3.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.309 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.112 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5170 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4870 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7012 ; 1.678 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11222 ; 0.822 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 650 ; 7.064 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;37.949 ;25.536 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 866 ;16.591 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.534 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 817 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5839 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1114 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4INJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34854 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.90000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4H1H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35%MPD, IMIDAZOLE, 0.1 MGCL2, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.88800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.12100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.12100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.44400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.12100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.12100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 154.33200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.12100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.12100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.44400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.12100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.12100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 154.33200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.88800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 SER B -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 ASN B -1 CG OD1 ND2 REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 ARG B 310 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 18 -107.29 -115.37 REMARK 500 SER A 57 -140.41 -125.46 REMARK 500 PHE A 86 -20.32 -149.81 REMARK 500 ALA A 111 -118.00 63.88 REMARK 500 GLU A 215 -33.48 -39.28 REMARK 500 ILE A 322 -83.91 -113.43 REMARK 500 SER B 18 -108.30 -109.95 REMARK 500 SER B 57 -147.00 -129.87 REMARK 500 PHE B 86 -23.19 -142.52 REMARK 500 ALA B 111 -120.07 65.77 REMARK 500 PRO B 159 165.97 -45.86 REMARK 500 ASP B 176 87.04 -151.31 REMARK 500 ASN B 181 71.03 -157.05 REMARK 500 GLU B 228 143.54 -170.54 REMARK 500 ILE B 322 -73.26 -85.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 524 O REMARK 620 2 HOH A 560 O 88.1 REMARK 620 3 HOH B 529 O 165.0 90.0 REMARK 620 4 HOH B 530 O 82.5 90.8 82.6 REMARK 620 5 HOH B 571 O 90.0 175.2 90.7 84.7 REMARK 620 6 HOH B 572 O 95.8 95.4 99.3 173.6 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H1H RELATED DB: PDB REMARK 900 RELATED ID: IDP91762 RELATED DB: TARGETTRACK DBREF 4INJ A 1 324 UNP Q8Y6P6 Q8Y6P6_LISMO 1 324 DBREF 4INJ B 1 324 UNP Q8Y6P6 Q8Y6P6_LISMO 1 324 SEQADV 4INJ SER A -2 UNP Q8Y6P6 EXPRESSION TAG SEQADV 4INJ ASN A -1 UNP Q8Y6P6 EXPRESSION TAG SEQADV 4INJ ALA A 0 UNP Q8Y6P6 EXPRESSION TAG SEQADV 4INJ ALA A 111 UNP Q8Y6P6 SER 111 ENGINEERED MUTATION SEQADV 4INJ SER B -2 UNP Q8Y6P6 EXPRESSION TAG SEQADV 4INJ ASN B -1 UNP Q8Y6P6 EXPRESSION TAG SEQADV 4INJ ALA B 0 UNP Q8Y6P6 EXPRESSION TAG SEQADV 4INJ ALA B 111 UNP Q8Y6P6 SER 111 ENGINEERED MUTATION SEQRES 1 A 327 SER ASN ALA MET ILE PRO ALA LYS LEU LYS GLN GLY ASP SEQRES 2 A 327 GLU ILE ARG ILE ILE ALA PRO SER ARG SER ILE GLY ILE SEQRES 3 A 327 MET ALA ASP ASN GLN VAL GLU ILE ALA VAL ASN ARG LEU SEQRES 4 A 327 THR ASP MET GLY PHE LYS VAL THR PHE GLY GLU HIS VAL SEQRES 5 A 327 ALA GLU MET ASP CYS MET MET SER SER SER ILE ARG SER SEQRES 6 A 327 ARG VAL ALA ASP ILE HIS GLU ALA PHE ASN ASP SER SER SEQRES 7 A 327 VAL LYS ALA ILE LEU THR VAL ILE GLY GLY PHE ASN SER SEQRES 8 A 327 ASN GLN LEU LEU PRO TYR LEU ASP TYR ASP LEU ILE SER SEQRES 9 A 327 GLU ASN PRO LYS ILE LEU CYS GLY PHE ALA ASP ILE THR SEQRES 10 A 327 ALA LEU ALA THR ALA ILE TYR THR GLN THR GLU LEU ILE SEQRES 11 A 327 THR TYR SER GLY ALA HIS PHE SER SER PHE SER MET GLU SEQRES 12 A 327 LYS GLY LEU ASP TYR VAL MET GLU SER PHE SER ASP CYS SEQRES 13 A 327 LEU LEU GLN LYS GLU PRO PHE ALA LEU LYS GLU SER ALA SEQRES 14 A 327 THR TRP SER ASP ASP GLU TRP TYR LEU ASP GLN GLU ASN SEQRES 15 A 327 ARG ASN PHE ILE PRO ASN GLU GLY LEU VAL VAL MET GLN SEQRES 16 A 327 PRO GLY VAL ALA GLU GLY ILE ILE ILE GLY GLY ASN LEU SEQRES 17 A 327 CYS THR LEU ASN LEU LEU GLN GLY THR GLU TYR MET PRO SEQRES 18 A 327 ASN LEU ALA GLY THR ILE LEU PHE ILE GLU ASP ASP PHE SEQRES 19 A 327 MET THR ILE PRO GLU THR PHE ASP ARG ASP LEU GLU SER SEQRES 20 A 327 LEU LEU SER GLN PRO GLY ALA ASP GLU ILE GLU GLY MET SEQRES 21 A 327 VAL ILE GLY ARG PHE GLN GLN LYS THR ALA MET THR ALA SEQRES 22 A 327 GLU LYS LEU ALA TYR ILE ILE GLU THR LYS THR ALA LEU SEQRES 23 A 327 GLN LYS ILE PRO VAL ILE SER GLY ALA ASP PHE GLY HIS SEQRES 24 A 327 THR GLN PRO ILE ALA THR PHE PRO ILE GLY GLY THR ALA SEQRES 25 A 327 ARG ILE ASP THR ASN GLN THR ASP LYS ILE GLN ILE ILE SEQRES 26 A 327 ARG HIS SEQRES 1 B 327 SER ASN ALA MET ILE PRO ALA LYS LEU LYS GLN GLY ASP SEQRES 2 B 327 GLU ILE ARG ILE ILE ALA PRO SER ARG SER ILE GLY ILE SEQRES 3 B 327 MET ALA ASP ASN GLN VAL GLU ILE ALA VAL ASN ARG LEU SEQRES 4 B 327 THR ASP MET GLY PHE LYS VAL THR PHE GLY GLU HIS VAL SEQRES 5 B 327 ALA GLU MET ASP CYS MET MET SER SER SER ILE ARG SER SEQRES 6 B 327 ARG VAL ALA ASP ILE HIS GLU ALA PHE ASN ASP SER SER SEQRES 7 B 327 VAL LYS ALA ILE LEU THR VAL ILE GLY GLY PHE ASN SER SEQRES 8 B 327 ASN GLN LEU LEU PRO TYR LEU ASP TYR ASP LEU ILE SER SEQRES 9 B 327 GLU ASN PRO LYS ILE LEU CYS GLY PHE ALA ASP ILE THR SEQRES 10 B 327 ALA LEU ALA THR ALA ILE TYR THR GLN THR GLU LEU ILE SEQRES 11 B 327 THR TYR SER GLY ALA HIS PHE SER SER PHE SER MET GLU SEQRES 12 B 327 LYS GLY LEU ASP TYR VAL MET GLU SER PHE SER ASP CYS SEQRES 13 B 327 LEU LEU GLN LYS GLU PRO PHE ALA LEU LYS GLU SER ALA SEQRES 14 B 327 THR TRP SER ASP ASP GLU TRP TYR LEU ASP GLN GLU ASN SEQRES 15 B 327 ARG ASN PHE ILE PRO ASN GLU GLY LEU VAL VAL MET GLN SEQRES 16 B 327 PRO GLY VAL ALA GLU GLY ILE ILE ILE GLY GLY ASN LEU SEQRES 17 B 327 CYS THR LEU ASN LEU LEU GLN GLY THR GLU TYR MET PRO SEQRES 18 B 327 ASN LEU ALA GLY THR ILE LEU PHE ILE GLU ASP ASP PHE SEQRES 19 B 327 MET THR ILE PRO GLU THR PHE ASP ARG ASP LEU GLU SER SEQRES 20 B 327 LEU LEU SER GLN PRO GLY ALA ASP GLU ILE GLU GLY MET SEQRES 21 B 327 VAL ILE GLY ARG PHE GLN GLN LYS THR ALA MET THR ALA SEQRES 22 B 327 GLU LYS LEU ALA TYR ILE ILE GLU THR LYS THR ALA LEU SEQRES 23 B 327 GLN LYS ILE PRO VAL ILE SER GLY ALA ASP PHE GLY HIS SEQRES 24 B 327 THR GLN PRO ILE ALA THR PHE PRO ILE GLY GLY THR ALA SEQRES 25 B 327 ARG ILE ASP THR ASN GLN THR ASP LYS ILE GLN ILE ILE SEQRES 26 B 327 ARG HIS HET LMS A 401 23 HET MG A 402 1 HET GOL A 404 6 HET LMS B 401 23 HET PEG B 402 7 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET GOL B 406 6 HETNAM LMS [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4- HETNAM 2 LMS DIHYDROXYTETRAHYDRO-2-FURANYL]METHYL SULFAMATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 LMS 2(C10 H14 N6 O6 S) FORMUL 4 MG MG 2+ FORMUL 5 GOL 5(C3 H8 O3) FORMUL 7 PEG C4 H10 O3 FORMUL 12 HOH *175(H2 O) HELIX 1 1 SER A 20 MET A 24 5 5 HELIX 2 2 ALA A 25 GLY A 40 1 16 HELIX 3 3 SER A 59 ASP A 73 1 15 HELIX 4 4 ASN A 87 LEU A 95 5 9 HELIX 5 5 ASP A 96 ASN A 103 1 8 HELIX 6 6 ASP A 112 GLU A 125 1 14 HELIX 7 7 PHE A 134 MET A 139 5 6 HELIX 8 8 LEU A 143 LEU A 155 1 13 HELIX 9 9 LEU A 205 ASN A 209 1 5 HELIX 10 10 LEU A 210 GLN A 212 5 3 HELIX 11 11 ILE A 234 LEU A 246 1 13 HELIX 12 12 GLY A 250 ILE A 254 5 5 HELIX 13 13 THR A 269 THR A 279 1 11 HELIX 14 14 LYS A 280 GLN A 284 5 5 HELIX 15 15 SER B 20 MET B 24 5 5 HELIX 16 16 ALA B 25 MET B 39 1 15 HELIX 17 17 SER B 59 ASP B 73 1 15 HELIX 18 18 ASN B 87 LEU B 95 5 9 HELIX 19 19 ASP B 96 GLU B 102 1 7 HELIX 20 20 PHE B 110 ASP B 112 5 3 HELIX 21 21 ILE B 113 GLU B 125 1 13 HELIX 22 22 PHE B 134 MET B 139 5 6 HELIX 23 23 LEU B 143 LEU B 155 1 13 HELIX 24 24 LEU B 205 ASN B 209 1 5 HELIX 25 25 LEU B 210 GLN B 212 5 3 HELIX 26 26 ILE B 234 LEU B 246 1 13 HELIX 27 27 GLY B 250 ILE B 254 5 5 HELIX 28 28 GLN B 263 ALA B 267 5 5 HELIX 29 29 THR B 269 THR B 279 1 11 HELIX 30 30 LYS B 280 GLN B 284 5 5 SHEET 1 A 6 LYS A 42 PHE A 45 0 SHEET 2 A 6 GLU A 11 ILE A 15 1 N ILE A 12 O LYS A 42 SHEET 3 A 6 VAL A 76 THR A 81 1 O LEU A 80 N ARG A 13 SHEET 4 A 6 ILE A 106 GLY A 109 1 O CYS A 108 N ILE A 79 SHEET 5 A 6 THR A 128 SER A 130 1 O TYR A 129 N LEU A 107 SHEET 6 A 6 PHE A 303 ILE A 305 -1 O PHE A 303 N SER A 130 SHEET 1 B 8 PHE A 160 ALA A 161 0 SHEET 2 B 8 ILE A 319 ILE A 321 -1 O ILE A 321 N PHE A 160 SHEET 3 B 8 THR A 308 ASP A 312 -1 N ARG A 310 O GLN A 320 SHEET 4 B 8 VAL A 195 ASN A 204 -1 N ALA A 196 O ILE A 311 SHEET 5 B 8 THR A 223 GLU A 228 1 O PHE A 226 N GLY A 203 SHEET 6 B 8 GLY A 256 GLY A 260 1 O VAL A 258 N LEU A 225 SHEET 7 B 8 VAL A 288 ALA A 292 1 O ILE A 289 N ILE A 259 SHEET 8 B 8 VAL A 189 GLN A 192 -1 N MET A 191 O VAL A 288 SHEET 1 C 2 THR A 167 TRP A 168 0 SHEET 2 C 2 ILE A 183 PRO A 184 -1 O ILE A 183 N TRP A 168 SHEET 1 D 6 LYS B 42 PHE B 45 0 SHEET 2 D 6 GLU B 11 ILE B 15 1 N ILE B 12 O LYS B 42 SHEET 3 D 6 VAL B 76 THR B 81 1 O LYS B 77 N GLU B 11 SHEET 4 D 6 ILE B 106 GLY B 109 1 O ILE B 106 N ILE B 79 SHEET 5 D 6 THR B 128 SER B 130 1 O TYR B 129 N LEU B 107 SHEET 6 D 6 PHE B 303 ILE B 305 -1 O ILE B 305 N THR B 128 SHEET 1 E 8 PHE B 160 ALA B 161 0 SHEET 2 E 8 ILE B 319 ILE B 321 -1 O ILE B 321 N PHE B 160 SHEET 3 E 8 THR B 308 ASP B 312 -1 N ARG B 310 O GLN B 320 SHEET 4 E 8 VAL B 195 ASN B 204 -1 N ALA B 196 O ILE B 311 SHEET 5 E 8 THR B 223 GLU B 228 1 O ILE B 224 N ILE B 199 SHEET 6 E 8 GLY B 256 GLY B 260 1 O VAL B 258 N LEU B 225 SHEET 7 E 8 VAL B 288 ALA B 292 1 O ILE B 289 N ILE B 259 SHEET 8 E 8 VAL B 189 GLN B 192 -1 N VAL B 189 O SER B 290 SHEET 1 F 2 THR B 167 TRP B 168 0 SHEET 2 F 2 ILE B 183 PRO B 184 -1 O ILE B 183 N TRP B 168 LINK MG MG A 402 O HOH A 524 1555 1555 2.13 LINK MG MG A 402 O HOH A 560 1555 1555 2.07 LINK MG MG A 402 O HOH B 529 1555 1555 2.06 LINK MG MG A 402 O HOH B 530 1555 1555 2.11 LINK MG MG A 402 O HOH B 571 1555 1555 2.09 LINK MG MG A 402 O HOH B 572 1555 1555 2.26 CISPEP 1 GLN A 298 PRO A 299 0 1.95 CISPEP 2 GLN B 298 PRO B 299 0 -0.92 SITE 1 AC1 11 ARG A 19 ILE A 23 GLN A 28 ILE A 83 SITE 2 AC1 11 GLY A 84 ALA A 111 HIS A 133 TYR A 174 SITE 3 AC1 11 HIS A 296 GOL A 404 HOH A 523 SITE 1 AC2 6 HOH A 524 HOH A 560 HOH B 529 HOH B 530 SITE 2 AC2 6 HOH B 571 HOH B 572 SITE 1 AC3 6 SER A 136 TRP A 173 GLY A 295 THR A 297 SITE 2 AC3 6 ILE A 300 LMS A 401 SITE 1 AC4 14 ARG B 19 ILE B 23 GLN B 28 ILE B 83 SITE 2 AC4 14 GLY B 84 GLY B 85 ALA B 111 HIS B 133 SITE 3 AC4 14 TYR B 174 HIS B 296 GOL B 406 HOH B 570 SITE 4 AC4 14 HOH B 583 HOH B 585 SITE 1 AC5 9 GLU A 51 MET A 52 ASP A 53 SER A 58 SITE 2 AC5 9 SER A 59 GLU B 51 SER B 59 SER B 62 SITE 3 AC5 9 GOL B 403 SITE 1 AC6 9 GLU A 51 SER A 59 ARG A 61 SER A 62 SITE 2 AC6 9 GLU A 271 ASP B 53 CYS B 54 PEG B 402 SITE 3 AC6 9 HOH B 545 SITE 1 AC7 7 THR A 37 ASP B 144 GLU B 148 LYS B 163 SITE 2 AC7 7 SER B 165 ALA B 166 GOL B 405 SITE 1 AC8 5 GLY B 142 ASP B 144 THR B 167 PHE B 182 SITE 2 AC8 5 GOL B 404 SITE 1 AC9 7 PHE B 110 SER B 136 TRP B 173 THR B 297 SITE 2 AC9 7 GLN B 298 ILE B 300 LMS B 401 CRYST1 92.242 92.242 205.776 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010841 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004860 0.00000