HEADER MEMBRANE PROTEIN 07-JAN-13 4IO7 TITLE CRYSTAL STRUCTURE OF THE AVGLUR1 LIGAND BINDING DOMAIN COMPLEX WITH TITLE 2 PHENYLALANINE AT 1.9 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVGLUR1 LIGAND BINDING DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 457-567; 680-812; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADINETA VAGA; SOURCE 3 ORGANISM_COMMON: ROTIFER; SOURCE 4 ORGANISM_TAXID: 104782; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B MODIFIED KEYWDS MEMBRANE PROTEIN, ION CHANNEL EXPDTA X-RAY DIFFRACTION AUTHOR S.LOMASH,S.CHITTORI,M.L.MAYER REVDAT 4 20-SEP-23 4IO7 1 REMARK SEQADV REVDAT 3 09-AUG-17 4IO7 1 SOURCE REVDAT 2 20-MAR-13 4IO7 1 JRNL REVDAT 1 20-FEB-13 4IO7 0 JRNL AUTH S.LOMASH,S.CHITTORI,P.BROWN,M.L.MAYER JRNL TITL ANIONS MEDIATE LIGAND BINDING IN ADINETA VAGA GLUTAMATE JRNL TITL 2 RECEPTOR ION CHANNELS. JRNL REF STRUCTURE V. 21 414 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23434404 JRNL DOI 10.1016/J.STR.2013.01.006 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5390 - 4.1331 1.00 4157 152 0.1577 0.1903 REMARK 3 2 4.1331 - 3.2820 1.00 4101 132 0.1433 0.1742 REMARK 3 3 3.2820 - 2.8675 1.00 4119 144 0.1574 0.1720 REMARK 3 4 2.8675 - 2.6055 1.00 4103 135 0.1567 0.1795 REMARK 3 5 2.6055 - 2.4188 1.00 4108 123 0.1545 0.1857 REMARK 3 6 2.4188 - 2.2763 1.00 4090 130 0.1497 0.1669 REMARK 3 7 2.2763 - 2.1623 1.00 4103 131 0.1500 0.2264 REMARK 3 8 2.1623 - 2.0682 1.00 4105 126 0.1571 0.2025 REMARK 3 9 2.0682 - 1.9886 1.00 4083 128 0.1721 0.2251 REMARK 3 10 1.9886 - 1.9200 1.00 4079 136 0.1907 0.2125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4035 REMARK 3 ANGLE : 1.284 5477 REMARK 3 CHIRALITY : 0.077 632 REMARK 3 PLANARITY : 0.006 706 REMARK 3 DIHEDRAL : 11.414 1513 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:26) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9822 39.1825 -16.2405 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.2179 REMARK 3 T33: 0.0772 T12: -0.0498 REMARK 3 T13: -0.0535 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 3.4193 L22: 1.7649 REMARK 3 L33: 1.2659 L12: -0.1582 REMARK 3 L13: 0.7052 L23: 1.4243 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: 0.0259 S13: -0.0648 REMARK 3 S21: -0.2153 S22: 0.0112 S23: 0.1815 REMARK 3 S31: 0.0406 S32: -0.1336 S33: -0.1194 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 27:36) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0950 44.7686 -33.7249 REMARK 3 T TENSOR REMARK 3 T11: 1.0717 T22: 0.9182 REMARK 3 T33: 0.3884 T12: -0.2123 REMARK 3 T13: -0.1539 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 2.2994 L22: 3.2737 REMARK 3 L33: 3.8706 L12: -1.4389 REMARK 3 L13: 2.2697 L23: -3.3913 REMARK 3 S TENSOR REMARK 3 S11: 0.1200 S12: 1.4246 S13: 0.5011 REMARK 3 S21: -0.9479 S22: -0.0516 S23: 0.0958 REMARK 3 S31: -0.8812 S32: -0.0133 S33: 0.1787 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 37:126) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6093 46.2958 -9.1905 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.1036 REMARK 3 T33: 0.0798 T12: -0.0033 REMARK 3 T13: -0.0061 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.8184 L22: 1.9840 REMARK 3 L33: 0.8188 L12: 0.6206 REMARK 3 L13: -0.3992 L23: -0.1280 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: 0.0607 S13: 0.0720 REMARK 3 S21: -0.1714 S22: 0.0750 S23: -0.0308 REMARK 3 S31: -0.0145 S32: 0.0509 S33: -0.0568 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 127:203) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4021 58.5221 -9.9781 REMARK 3 T TENSOR REMARK 3 T11: 0.1842 T22: 0.1788 REMARK 3 T33: 0.2306 T12: -0.0280 REMARK 3 T13: 0.0671 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.4033 L22: 2.9305 REMARK 3 L33: 0.9989 L12: -0.1153 REMARK 3 L13: -0.7067 L23: 0.2126 REMARK 3 S TENSOR REMARK 3 S11: 0.1105 S12: 0.1342 S13: 0.2987 REMARK 3 S21: -0.1807 S22: 0.0846 S23: -0.2604 REMARK 3 S31: -0.2037 S32: 0.0521 S33: -0.1648 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 204:237) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4384 34.3197 -4.5265 REMARK 3 T TENSOR REMARK 3 T11: 0.1270 T22: 0.1215 REMARK 3 T33: 0.0702 T12: -0.0218 REMARK 3 T13: -0.0257 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.7397 L22: 3.5338 REMARK 3 L33: 2.3224 L12: -0.1307 REMARK 3 L13: -0.5441 L23: 0.1324 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: -0.0075 S13: -0.1160 REMARK 3 S21: -0.0073 S22: 0.0425 S23: 0.1586 REMARK 3 S31: 0.1961 S32: -0.0557 S33: -0.0326 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 238:248) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8425 39.1664 -16.9560 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.3164 REMARK 3 T33: 0.3206 T12: -0.0333 REMARK 3 T13: 0.0891 T23: -0.0782 REMARK 3 L TENSOR REMARK 3 L11: 3.7943 L22: 6.9779 REMARK 3 L33: 2.0218 L12: 5.0814 REMARK 3 L13: -1.3074 L23: -1.2530 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: -0.3111 S13: -0.3507 REMARK 3 S21: 0.1943 S22: -0.1018 S23: -1.1038 REMARK 3 S31: 0.2842 S32: 0.5207 S33: 0.3359 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 1:37) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5420 36.8175 25.3020 REMARK 3 T TENSOR REMARK 3 T11: 0.2692 T22: 0.2625 REMARK 3 T33: 0.1243 T12: -0.0029 REMARK 3 T13: -0.0229 T23: -0.0556 REMARK 3 L TENSOR REMARK 3 L11: 2.8932 L22: 1.7573 REMARK 3 L33: 1.5365 L12: 0.5087 REMARK 3 L13: -0.4596 L23: 0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.2093 S12: -0.4102 S13: 0.0316 REMARK 3 S21: 0.3960 S22: -0.1204 S23: 0.0622 REMARK 3 S31: 0.0653 S32: -0.0535 S33: -0.0140 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 38:53) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5354 45.5217 20.0977 REMARK 3 T TENSOR REMARK 3 T11: 0.2612 T22: 0.1859 REMARK 3 T33: 0.1711 T12: 0.0322 REMARK 3 T13: 0.0336 T23: -0.0665 REMARK 3 L TENSOR REMARK 3 L11: 6.9826 L22: 2.3464 REMARK 3 L33: 1.0998 L12: -0.7278 REMARK 3 L13: 0.3219 L23: 0.8171 REMARK 3 S TENSOR REMARK 3 S11: 0.0851 S12: -0.5695 S13: 0.9636 REMARK 3 S21: 0.3778 S22: 0.0737 S23: -0.1055 REMARK 3 S31: -0.5665 S32: 0.0180 S33: 0.0182 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 54:127) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3998 27.9496 11.2356 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.1255 REMARK 3 T33: 0.0947 T12: 0.0005 REMARK 3 T13: -0.0266 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.5673 L22: 2.2301 REMARK 3 L33: 0.8419 L12: -0.3771 REMARK 3 L13: -0.1393 L23: -0.0131 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: -0.0890 S13: -0.0771 REMARK 3 S21: 0.1257 S22: 0.0767 S23: -0.1559 REMARK 3 S31: 0.1090 S32: 0.1019 S33: -0.0192 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 128:176) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7156 16.9306 11.4329 REMARK 3 T TENSOR REMARK 3 T11: 0.2314 T22: 0.2186 REMARK 3 T33: 0.3017 T12: 0.0565 REMARK 3 T13: 0.0254 T23: 0.0751 REMARK 3 L TENSOR REMARK 3 L11: 4.2755 L22: 3.2815 REMARK 3 L33: 2.3563 L12: -0.4084 REMARK 3 L13: 0.5364 L23: -0.1760 REMARK 3 S TENSOR REMARK 3 S11: -0.2119 S12: -0.4967 S13: -0.6282 REMARK 3 S21: 0.0759 S22: 0.0166 S23: -0.2661 REMARK 3 S31: 0.0387 S32: 0.2333 S33: 0.1581 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 177:219) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8432 32.1624 10.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.1475 T22: 0.1739 REMARK 3 T33: 0.1383 T12: 0.0159 REMARK 3 T13: -0.0359 T23: -0.0595 REMARK 3 L TENSOR REMARK 3 L11: 2.5269 L22: 2.6602 REMARK 3 L33: 1.1424 L12: -0.8328 REMARK 3 L13: -0.6902 L23: 0.2279 REMARK 3 S TENSOR REMARK 3 S11: -0.1019 S12: -0.2592 S13: 0.2925 REMARK 3 S21: 0.1757 S22: 0.1502 S23: -0.4953 REMARK 3 S31: 0.1138 S32: 0.1678 S33: -0.0252 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 220:248) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5345 45.3911 12.8746 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.2093 REMARK 3 T33: 0.2163 T12: -0.0252 REMARK 3 T13: -0.0132 T23: -0.0787 REMARK 3 L TENSOR REMARK 3 L11: 2.6161 L22: 1.9800 REMARK 3 L33: 2.7575 L12: -0.6878 REMARK 3 L13: 2.4335 L23: -0.7956 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: 0.3119 S13: 0.1493 REMARK 3 S21: 0.2120 S22: 0.0363 S23: -0.4693 REMARK 3 S31: -0.1361 S32: 0.4522 S33: 0.0225 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IO7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42897 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4IO2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.5% PEG 3350, 0.05 M NACITRATE, 0.1 REMARK 280 M, BISTRIS PROPANE 0.05 M PHENYLALANINE, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.11750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 28 REMARK 465 THR A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 THR B 29 REMARK 465 SER B 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 17 98.76 -171.52 REMARK 500 SER A 103 147.00 -176.03 REMARK 500 SER A 103 145.96 -176.03 REMARK 500 SER B 17 96.68 -172.07 REMARK 500 ASN B 100 152.09 -49.35 REMARK 500 SER B 103 145.33 -172.00 REMARK 500 SER B 205 -166.02 -160.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PHE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PHE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IO2 RELATED DB: PDB REMARK 900 RELATED ID: 4IO3 RELATED DB: PDB REMARK 900 RELATED ID: 4IO4 RELATED DB: PDB REMARK 900 RELATED ID: 4IO5 RELATED DB: PDB REMARK 900 RELATED ID: 4IO6 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN CRYSTALLIZED IS THE EXTRACELLULAR LIGAND BINDING DOMAIN REMARK 999 OF AVGLUR1. TRANSMEMBRANE REGIONS WERE GENETICALLY REMOVED AND REMARK 999 REPLACED WITH A GLY-THR LINKER THEREFORE, THE SEQUENCE MATCHES REMARK 999 DISCONTINUOUSLY WITH THE REFERENCE DATABASE (457-567 AND 680-812) DBREF 4IO7 A 3 113 UNP E9P5T5 E9P5T5_ADIVA 457 567 DBREF 4IO7 A 116 248 UNP E9P5T5 E9P5T5_ADIVA 680 812 DBREF 4IO7 B 3 113 UNP E9P5T5 E9P5T5_ADIVA 457 567 DBREF 4IO7 B 116 248 UNP E9P5T5 E9P5T5_ADIVA 680 812 SEQADV 4IO7 GLY A 1 UNP E9P5T5 EXPRESSION TAG SEQADV 4IO7 SER A 2 UNP E9P5T5 EXPRESSION TAG SEQADV 4IO7 GLY A 114 UNP E9P5T5 EXPRESSION TAG SEQADV 4IO7 THR A 115 UNP E9P5T5 EXPRESSION TAG SEQADV 4IO7 GLY B 1 UNP E9P5T5 EXPRESSION TAG SEQADV 4IO7 SER B 2 UNP E9P5T5 EXPRESSION TAG SEQADV 4IO7 GLY B 114 UNP E9P5T5 EXPRESSION TAG SEQADV 4IO7 THR B 115 UNP E9P5T5 EXPRESSION TAG SEQRES 1 A 248 GLY SER ALA ARG LEU LYS GLY ILE THR LEU ARG ILE GLY SEQRES 2 A 248 VAL ILE GLU SER VAL PRO PHE THR ILE VAL ALA ASN VAL SEQRES 3 A 248 ILE ASP THR SER GLY ARG ASN THR THR LYS LEU THR GLY SEQRES 4 A 248 TYR VAL LEU ASP LEU ILE GLU TYR LEU ARG ASP LYS MET SEQRES 5 A 248 GLY PHE VAL ALA ASP VAL GLN LEU ALA PRO PRO ASN THR SEQRES 6 A 248 SER TYR THR GLY LEU VAL LEU ALA LEU ALA ASN GLY ASP SEQRES 7 A 248 TYR ASP ILE ALA ILE GLY ASP ILE THR VAL THR SER ALA SEQRES 8 A 248 ARG ARG GLU ILE VAL ALA PHE SER ASN SER ILE SER ASP SEQRES 9 A 248 ASN SER MET ARG ILE LEU MET ARG LYS GLY THR LEU ILE SEQRES 10 A 248 ASP GLY MET ASP ASP LEU LYS ASN GLY LYS ILE PRO TYR SEQRES 11 A 248 ASN ARG ILE GLY ILE ARG ILE GLY THR ALA GLY GLU ASP SEQRES 12 A 248 TYR TYR LEU ARG GLU ILE SER GLY GLY SER ARG ASN PHE SEQRES 13 A 248 TYR PRO LEU LYS SER ARG GLN GLU MET TYR ASP SER LEU SEQRES 14 A 248 LEU ALA GLY ILE ILE ASP VAL SER PHE MET ASP ILE GLY SEQRES 15 A 248 THR ALA GLU TYR VAL THR ASN ASN ILE TYR CYS ASN LEU SEQRES 16 A 248 THR LEU VAL GLY GLU ASP PHE ASP LYS SER THR PHE GLY SEQRES 17 A 248 ILE VAL THR PRO LYS GLU TRP LEU TYR ALA LYS ASP LEU SEQRES 18 A 248 ASP VAL ASN ILE LEU SER LEU ARG GLU THR GLY ILE LEU SEQRES 19 A 248 ASP ASN LEU LYS LYS LYS TRP PHE GLN THR LYS ALA CYS SEQRES 20 A 248 PRO SEQRES 1 B 248 GLY SER ALA ARG LEU LYS GLY ILE THR LEU ARG ILE GLY SEQRES 2 B 248 VAL ILE GLU SER VAL PRO PHE THR ILE VAL ALA ASN VAL SEQRES 3 B 248 ILE ASP THR SER GLY ARG ASN THR THR LYS LEU THR GLY SEQRES 4 B 248 TYR VAL LEU ASP LEU ILE GLU TYR LEU ARG ASP LYS MET SEQRES 5 B 248 GLY PHE VAL ALA ASP VAL GLN LEU ALA PRO PRO ASN THR SEQRES 6 B 248 SER TYR THR GLY LEU VAL LEU ALA LEU ALA ASN GLY ASP SEQRES 7 B 248 TYR ASP ILE ALA ILE GLY ASP ILE THR VAL THR SER ALA SEQRES 8 B 248 ARG ARG GLU ILE VAL ALA PHE SER ASN SER ILE SER ASP SEQRES 9 B 248 ASN SER MET ARG ILE LEU MET ARG LYS GLY THR LEU ILE SEQRES 10 B 248 ASP GLY MET ASP ASP LEU LYS ASN GLY LYS ILE PRO TYR SEQRES 11 B 248 ASN ARG ILE GLY ILE ARG ILE GLY THR ALA GLY GLU ASP SEQRES 12 B 248 TYR TYR LEU ARG GLU ILE SER GLY GLY SER ARG ASN PHE SEQRES 13 B 248 TYR PRO LEU LYS SER ARG GLN GLU MET TYR ASP SER LEU SEQRES 14 B 248 LEU ALA GLY ILE ILE ASP VAL SER PHE MET ASP ILE GLY SEQRES 15 B 248 THR ALA GLU TYR VAL THR ASN ASN ILE TYR CYS ASN LEU SEQRES 16 B 248 THR LEU VAL GLY GLU ASP PHE ASP LYS SER THR PHE GLY SEQRES 17 B 248 ILE VAL THR PRO LYS GLU TRP LEU TYR ALA LYS ASP LEU SEQRES 18 B 248 ASP VAL ASN ILE LEU SER LEU ARG GLU THR GLY ILE LEU SEQRES 19 B 248 ASP ASN LEU LYS LYS LYS TRP PHE GLN THR LYS ALA CYS SEQRES 20 B 248 PRO HET PHE A 301 23 HET CL A 302 1 HET CL A 303 1 HET PHE B 301 23 HET CL B 302 1 HET CL B 303 1 HETNAM PHE PHENYLALANINE HETNAM CL CHLORIDE ION FORMUL 3 PHE 2(C9 H11 N O2) FORMUL 4 CL 4(CL 1-) FORMUL 9 HOH *291(H2 O) HELIX 1 1 GLY A 39 GLY A 53 1 15 HELIX 2 2 SER A 66 ASN A 76 1 11 HELIX 3 3 THR A 89 GLU A 94 1 6 HELIX 4 4 GLY A 119 ASN A 125 1 7 HELIX 5 5 PRO A 129 ASN A 131 5 3 HELIX 6 6 THR A 139 ILE A 149 1 11 HELIX 7 7 SER A 161 ALA A 171 1 11 HELIX 8 8 ILE A 181 ILE A 191 1 11 HELIX 9 9 TYR A 217 THR A 231 1 15 HELIX 10 10 GLY A 232 GLN A 243 1 12 HELIX 11 11 GLY B 39 GLY B 53 1 15 HELIX 12 12 SER B 66 ASN B 76 1 11 HELIX 13 13 THR B 89 GLU B 94 1 6 HELIX 14 14 GLY B 119 ASN B 125 1 7 HELIX 15 15 PRO B 129 ASN B 131 5 3 HELIX 16 16 THR B 139 ILE B 149 1 11 HELIX 17 17 SER B 161 ALA B 171 1 11 HELIX 18 18 ILE B 181 ILE B 191 1 11 HELIX 19 19 TYR B 217 THR B 231 1 15 HELIX 20 20 GLY B 232 GLN B 243 1 12 SHEET 1 A 3 VAL A 55 LEU A 60 0 SHEET 2 A 3 THR A 9 VAL A 14 1 N ILE A 12 O GLN A 59 SHEET 3 A 3 ILE A 81 ALA A 82 1 O ILE A 81 N GLY A 13 SHEET 1 B 2 ILE A 22 VAL A 26 0 SHEET 2 B 2 THR A 34 THR A 38 -1 O THR A 38 N ILE A 22 SHEET 1 C 2 ALA A 97 PHE A 98 0 SHEET 2 C 2 VAL A 210 THR A 211 -1 O THR A 211 N ALA A 97 SHEET 1 D 5 TYR A 157 LEU A 159 0 SHEET 2 D 5 ILE A 133 ARG A 136 1 N ILE A 133 O TYR A 157 SHEET 3 D 5 VAL A 176 ASP A 180 1 O VAL A 176 N GLY A 134 SHEET 4 D 5 SER A 103 ARG A 112 -1 N ARG A 108 O MET A 179 SHEET 5 D 5 LEU A 195 PHE A 207 -1 O THR A 196 N MET A 111 SHEET 1 E 3 VAL B 55 LEU B 60 0 SHEET 2 E 3 THR B 9 VAL B 14 1 N ILE B 12 O GLN B 59 SHEET 3 E 3 ILE B 81 ALA B 82 1 O ILE B 81 N GLY B 13 SHEET 1 F 2 ILE B 22 ILE B 27 0 SHEET 2 F 2 ASN B 33 THR B 38 -1 O THR B 38 N ILE B 22 SHEET 1 G 5 TYR B 157 LEU B 159 0 SHEET 2 G 5 ILE B 133 ARG B 136 1 N ILE B 133 O TYR B 157 SHEET 3 G 5 VAL B 176 ASP B 180 1 O VAL B 176 N GLY B 134 SHEET 4 G 5 ALA B 97 ARG B 112 -1 N LEU B 110 O SER B 177 SHEET 5 G 5 LEU B 195 THR B 211 -1 O PHE B 202 N MET B 107 SSBOND 1 CYS A 193 CYS A 247 1555 1555 2.05 SSBOND 2 CYS B 193 CYS B 247 1555 1555 2.04 CISPEP 1 VAL A 18 PRO A 19 0 1.20 CISPEP 2 VAL B 18 PRO B 19 0 3.42 SITE 1 AC1 10 TYR A 67 ASP A 85 ILE A 86 THR A 87 SITE 2 AC1 10 ARG A 92 THR A 139 ALA A 140 ARG A 162 SITE 3 AC1 10 ASP A 180 HOH A 540 SITE 1 AC2 3 ARG A 93 LYS A 213 GLU A 214 SITE 1 AC3 5 ASN A 100 SER A 101 ARG A 229 HOH A 487 SITE 2 AC3 5 THR B 206 SITE 1 AC4 8 TYR B 67 ASP B 85 ILE B 86 THR B 87 SITE 2 AC4 8 ARG B 92 THR B 139 ALA B 140 ASP B 180 SITE 1 AC5 5 ARG B 93 LYS B 213 GLU B 214 HOH B 431 SITE 2 AC5 5 HOH B 463 SITE 1 AC6 5 THR A 206 HOH A 487 ASN B 100 SER B 101 SITE 2 AC6 5 ARG B 229 CRYST1 55.499 100.235 56.757 90.00 116.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018018 0.000000 0.008979 0.00000 SCALE2 0.000000 0.009977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019686 0.00000