HEADER CHAPERONE 07-JAN-13 4IOD TITLE PRELIMINARY STRUCTURAL INVESTIGATIONS OF A MALARIAL PROTEIN SECRETION TITLE 2 SYSTEM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALARIAL CLP B2 ATPASE/HSP101 PROTEIN; COMPND 3 CHAIN: B, A, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PF11_0175, PF3D7_1116800; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF KEYWDS MALARIA, AAA+ ATPASE CLPB CHAPERONE, N-TERMINAL CARGO-BINDING DOMAIN, KEYWDS 2 PROTEIN TRANSLOCATION AND UNFOLDING, PARASITOPHOROUS VACUOLE, KEYWDS 3 CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR P.F.EGEA REVDAT 4 20-SEP-23 4IOD 1 REMARK SEQADV REVDAT 3 16-DEC-15 4IOD 1 JRNL REVDAT 2 29-JUL-15 4IOD 1 JRNL REVDAT 1 23-APR-14 4IOD 0 JRNL AUTH A.P.AHYOUNG,A.KOEHL,D.CASCIO,P.F.EGEA JRNL TITL STRUCTURAL MAPPING OF THE CLPB ATPASES OF PLASMODIUM JRNL TITL 2 FALCIPARUM: TARGETING PROTEIN FOLDING AND SECRETION FOR JRNL TITL 3 ANTIMALARIAL DRUG DESIGN. JRNL REF PROTEIN SCI. V. 24 1508 2015 JRNL REFN ISSN 0961-8368 JRNL PMID 26130467 JRNL DOI 10.1002/PRO.2739 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 53476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 5334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6037 - 5.5895 0.99 1716 186 0.2162 0.2029 REMARK 3 2 5.5895 - 4.4378 1.00 1660 186 0.1650 0.1929 REMARK 3 3 4.4378 - 3.8772 1.00 1635 188 0.1481 0.1548 REMARK 3 4 3.8772 - 3.5229 1.00 1637 178 0.1651 0.1959 REMARK 3 5 3.5229 - 3.2705 1.00 1630 179 0.1775 0.2216 REMARK 3 6 3.2705 - 3.0777 1.00 1615 179 0.1970 0.2163 REMARK 3 7 3.0777 - 2.9236 1.00 1628 185 0.1953 0.2362 REMARK 3 8 2.9236 - 2.7963 1.00 1595 177 0.1724 0.2426 REMARK 3 9 2.7963 - 2.6887 1.00 1604 179 0.1694 0.2110 REMARK 3 10 2.6887 - 2.5959 1.00 1632 177 0.1632 0.2135 REMARK 3 11 2.5959 - 2.5148 1.00 1591 179 0.1681 0.2053 REMARK 3 12 2.5148 - 2.4429 1.00 1604 182 0.1574 0.2178 REMARK 3 13 2.4429 - 2.3786 1.00 1610 177 0.1555 0.2043 REMARK 3 14 2.3786 - 2.3206 1.00 1589 171 0.1452 0.2198 REMARK 3 15 2.3206 - 2.2678 1.00 1633 178 0.1437 0.2015 REMARK 3 16 2.2678 - 2.2195 1.00 1588 183 0.1421 0.1917 REMARK 3 17 2.2195 - 2.1751 1.00 1585 177 0.1470 0.2139 REMARK 3 18 2.1751 - 2.1341 1.00 1577 169 0.1542 0.2006 REMARK 3 19 2.1341 - 2.0960 1.00 1601 179 0.1504 0.2154 REMARK 3 20 2.0960 - 2.0605 1.00 1603 180 0.1535 0.2122 REMARK 3 21 2.0605 - 2.0272 1.00 1570 174 0.1541 0.2271 REMARK 3 22 2.0272 - 1.9960 1.00 1612 177 0.1579 0.2196 REMARK 3 23 1.9960 - 1.9667 1.00 1594 183 0.1571 0.2255 REMARK 3 24 1.9667 - 1.9390 1.00 1582 169 0.1653 0.2448 REMARK 3 25 1.9390 - 1.9128 1.00 1618 166 0.1752 0.2595 REMARK 3 26 1.9128 - 1.8879 1.00 1574 194 0.1876 0.2799 REMARK 3 27 1.8879 - 1.8643 1.00 1573 188 0.1928 0.2972 REMARK 3 28 1.8643 - 1.8419 1.00 1615 174 0.2000 0.2719 REMARK 3 29 1.8419 - 1.8205 1.00 1582 164 0.2096 0.3034 REMARK 3 30 1.8205 - 1.8000 0.93 1489 156 0.2271 0.2804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 34.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11120 REMARK 3 B22 (A**2) : 1.35910 REMARK 3 B33 (A**2) : -1.24790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3585 REMARK 3 ANGLE : 1.231 4877 REMARK 3 CHIRALITY : 0.078 576 REMARK 3 PLANARITY : 0.007 628 REMARK 3 DIHEDRAL : 14.950 1374 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -29.2135 -15.2487 24.8367 REMARK 3 T TENSOR REMARK 3 T11: 0.0806 T22: 0.0544 REMARK 3 T33: 0.0609 T12: 0.0240 REMARK 3 T13: 0.0037 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.2343 L22: 0.5892 REMARK 3 L33: 0.8432 L12: -0.1930 REMARK 3 L13: 0.1694 L23: -0.5685 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: -0.0392 S13: -0.0550 REMARK 3 S21: 0.0862 S22: 0.0708 S23: 0.0623 REMARK 3 S31: -0.1009 S32: -0.0580 S33: -0.0165 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -29.8926 16.5017 8.5833 REMARK 3 T TENSOR REMARK 3 T11: 0.1088 T22: 0.0957 REMARK 3 T33: 0.1027 T12: -0.0177 REMARK 3 T13: 0.0298 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.5590 L22: 0.3469 REMARK 3 L33: 0.6563 L12: 0.3641 REMARK 3 L13: -0.1622 L23: -0.3046 REMARK 3 S TENSOR REMARK 3 S11: 0.0456 S12: -0.0578 S13: 0.0297 REMARK 3 S21: 0.0647 S22: -0.0480 S23: 0.0466 REMARK 3 S31: -0.0741 S32: 0.0848 S33: -0.0118 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -0.8357 31.2842 -6.2022 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.1169 REMARK 3 T33: 0.1319 T12: -0.0121 REMARK 3 T13: 0.0140 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.7484 L22: 0.3347 REMARK 3 L33: 0.7714 L12: -0.0191 REMARK 3 L13: -0.7098 L23: -0.0631 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: -0.0695 S13: -0.0179 REMARK 3 S21: 0.0531 S22: -0.0627 S23: -0.0840 REMARK 3 S31: 0.0853 S32: 0.0477 S33: -0.0429 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 MONOCHROMATOR. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53488 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KHY AND 1QVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AMMONIUM SULFATE, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.59000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.50500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.59000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.50500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.70000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.59000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.50500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.70000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.59000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.50500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -45.70000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 336 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 465 ASN B 5 REMARK 465 LYS B 6 REMARK 465 GLN B 7 REMARK 465 GLU B 8 REMARK 465 GLN B 9 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 GLN A 9 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 PRO C 3 REMARK 465 ASP C 4 REMARK 465 ASN C 5 REMARK 465 LYS C 6 REMARK 465 GLN C 7 REMARK 465 GLU C 8 REMARK 465 GLN C 9 REMARK 465 GLY C 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 83 CG OD1 ND2 REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 ASN A 83 CG OD1 ND2 REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 LYS C 84 CG CD CE NZ REMARK 470 LYS C 146 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU B 53 CA CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 325 O HOH B 432 2.16 REMARK 500 O HOH C 303 O HOH C 335 2.18 REMARK 500 OD1 ASN C 132 O HOH C 377 2.18 REMARK 500 O HOH B 340 O HOH B 416 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASN C 58 NH1 ARG C 147 3554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 55 C GLU A 56 N 0.166 REMARK 500 GLU A 129 CD GLU A 129 OE1 -0.071 REMARK 500 LYS C 36 CA LYS C 36 C 0.159 REMARK 500 GLU C 56 CD GLU C 56 OE1 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN C 105 CA - C - O ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 47 155.67 -49.05 REMARK 500 LYS B 108 -1.25 75.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 139 -10.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 201 DBREF 4IOD B 2 152 UNP Q8IIJ8 Q8IIJ8_PLAF7 27 177 DBREF 4IOD A 2 152 UNP Q8IIJ8 Q8IIJ8_PLAF7 27 177 DBREF 4IOD C 2 152 UNP Q8IIJ8 Q8IIJ8_PLAF7 27 177 SEQADV 4IOD MET B 1 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD LEU B 153 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD VAL B 154 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD PRO B 155 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD ARG B 156 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD MET A 1 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD LEU A 153 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD VAL A 154 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD PRO A 155 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD ARG A 156 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD MET C 1 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD LEU C 153 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD VAL C 154 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD PRO C 155 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IOD ARG C 156 UNP Q8IIJ8 EXPRESSION TAG SEQRES 1 B 156 MET ALA PRO ASP ASN LYS GLN GLU GLN GLY LYS TYR LEU SEQRES 2 B 156 ASN ARG THR ILE ASN ILE LEU ASN ALA GLY LYS ASN ILE SEQRES 3 B 156 ALA LYS SER TYR GLY HIS ASN LYS LEU LYS PRO ILE HIS SEQRES 4 B 156 ILE LEU SER ALA LEU ALA LYS SER ASP TYR GLY SER THR SEQRES 5 B 156 LEU PHE LYS GLU ASN ASN VAL ASN ALA ALA ASN LEU LYS SEQRES 6 B 156 GLU TYR ILE ASP ILE ALA LEU GLU GLN THR ARG ALA GLY SEQRES 7 B 156 ALA PRO LEU ASP ASN LYS SER LYS ILE VAL ASN SER ALA SEQRES 8 B 156 GLU VAL LYS GLU THR LEU ALA LEU ALA GLU ALA ALA ALA SEQRES 9 B 156 ASN LYS TYR LYS SER PRO LYS VAL ASP VAL GLU HIS LEU SEQRES 10 B 156 LEU SER GLY LEU SER ASN ASP GLU LEU VAL ASN GLU ILE SEQRES 11 B 156 PHE ASN GLU VAL TYR LEU THR ASP GLU ALA ILE LYS ALA SEQRES 12 B 156 ILE LEU LYS ARG LYS PHE GLU LYS THR LEU VAL PRO ARG SEQRES 1 A 156 MET ALA PRO ASP ASN LYS GLN GLU GLN GLY LYS TYR LEU SEQRES 2 A 156 ASN ARG THR ILE ASN ILE LEU ASN ALA GLY LYS ASN ILE SEQRES 3 A 156 ALA LYS SER TYR GLY HIS ASN LYS LEU LYS PRO ILE HIS SEQRES 4 A 156 ILE LEU SER ALA LEU ALA LYS SER ASP TYR GLY SER THR SEQRES 5 A 156 LEU PHE LYS GLU ASN ASN VAL ASN ALA ALA ASN LEU LYS SEQRES 6 A 156 GLU TYR ILE ASP ILE ALA LEU GLU GLN THR ARG ALA GLY SEQRES 7 A 156 ALA PRO LEU ASP ASN LYS SER LYS ILE VAL ASN SER ALA SEQRES 8 A 156 GLU VAL LYS GLU THR LEU ALA LEU ALA GLU ALA ALA ALA SEQRES 9 A 156 ASN LYS TYR LYS SER PRO LYS VAL ASP VAL GLU HIS LEU SEQRES 10 A 156 LEU SER GLY LEU SER ASN ASP GLU LEU VAL ASN GLU ILE SEQRES 11 A 156 PHE ASN GLU VAL TYR LEU THR ASP GLU ALA ILE LYS ALA SEQRES 12 A 156 ILE LEU LYS ARG LYS PHE GLU LYS THR LEU VAL PRO ARG SEQRES 1 C 156 MET ALA PRO ASP ASN LYS GLN GLU GLN GLY LYS TYR LEU SEQRES 2 C 156 ASN ARG THR ILE ASN ILE LEU ASN ALA GLY LYS ASN ILE SEQRES 3 C 156 ALA LYS SER TYR GLY HIS ASN LYS LEU LYS PRO ILE HIS SEQRES 4 C 156 ILE LEU SER ALA LEU ALA LYS SER ASP TYR GLY SER THR SEQRES 5 C 156 LEU PHE LYS GLU ASN ASN VAL ASN ALA ALA ASN LEU LYS SEQRES 6 C 156 GLU TYR ILE ASP ILE ALA LEU GLU GLN THR ARG ALA GLY SEQRES 7 C 156 ALA PRO LEU ASP ASN LYS SER LYS ILE VAL ASN SER ALA SEQRES 8 C 156 GLU VAL LYS GLU THR LEU ALA LEU ALA GLU ALA ALA ALA SEQRES 9 C 156 ASN LYS TYR LYS SER PRO LYS VAL ASP VAL GLU HIS LEU SEQRES 10 C 156 LEU SER GLY LEU SER ASN ASP GLU LEU VAL ASN GLU ILE SEQRES 11 C 156 PHE ASN GLU VAL TYR LEU THR ASP GLU ALA ILE LYS ALA SEQRES 12 C 156 ILE LEU LYS ARG LYS PHE GLU LYS THR LEU VAL PRO ARG HET SO4 B 201 5 HET SO4 A 201 5 HET SO4 C 201 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *371(H2 O) HELIX 1 1 LEU B 13 TYR B 30 1 18 HELIX 2 2 LYS B 36 SER B 47 1 12 HELIX 3 3 SER B 47 ASN B 57 1 11 HELIX 4 4 ASN B 60 THR B 75 1 16 HELIX 5 5 SER B 90 TYR B 107 1 18 HELIX 6 6 ASP B 113 SER B 122 1 10 HELIX 7 7 ASP B 124 VAL B 134 1 11 HELIX 8 8 THR B 137 VAL B 154 1 18 HELIX 9 9 LEU A 13 TYR A 30 1 18 HELIX 10 10 LYS A 36 SER A 47 1 12 HELIX 11 11 SER A 47 ASN A 57 1 11 HELIX 12 12 ASN A 60 THR A 75 1 16 HELIX 13 13 SER A 90 TYR A 107 1 18 HELIX 14 14 ASP A 113 SER A 122 1 10 HELIX 15 15 ASP A 124 VAL A 134 1 11 HELIX 16 16 THR A 137 VAL A 154 1 18 HELIX 17 17 LEU C 13 TYR C 30 1 18 HELIX 18 18 LYS C 36 SER C 47 1 12 HELIX 19 19 SER C 47 GLU C 56 1 10 HELIX 20 20 ASN C 60 THR C 75 1 16 HELIX 21 21 SER C 90 TYR C 107 1 18 HELIX 22 22 ASP C 113 SER C 122 1 10 HELIX 23 23 ASP C 124 VAL C 134 1 11 HELIX 24 24 THR C 137 VAL C 154 1 18 SHEET 1 A 2 LYS B 34 LEU B 35 0 SHEET 2 A 2 VAL B 88 ASN B 89 1 O VAL B 88 N LEU B 35 SHEET 1 B 2 LYS A 34 LEU A 35 0 SHEET 2 B 2 VAL A 88 ASN A 89 1 O VAL A 88 N LEU A 35 SHEET 1 C 2 LYS C 34 LEU C 35 0 SHEET 2 C 2 VAL C 88 ASN C 89 1 O VAL C 88 N LEU C 35 SITE 1 AC1 6 LYS A 108 HIS B 32 LYS B 36 ILE B 38 SITE 2 AC1 6 THR B 75 LEU B 126 SITE 1 AC2 4 HIS A 32 ASN A 33 LYS A 34 HOH A 414 SITE 1 AC3 6 ASN C 58 ARG C 147 LYS C 151 HOH C 367 SITE 2 AC3 6 HOH C 381 HOH C 383 CRYST1 89.180 141.010 91.400 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011213 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010941 0.00000