HEADER ISOMERASE 08-JAN-13 4IOT TITLE HIGH-RESOLUTION STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM, TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 316385; SOURCE 4 STRAIN: K12 / DH10B KEYWDS STRUCTURAL GENOMICS, MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS KEYWDS 2 INITIATIVE, BSGI, TIM BARREL, CONVERSION OF DIHYDROXYACETONE KEYWDS 3 PHOSPHATE TO D-GLYCERALDEHYDE-3-PHOSPHATE, CYTOSOL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.VINAIK,G.KOZLOV,K.GEHRING,MONTREAL-KINGSTON BACTERIAL STRUCTURAL AUTHOR 2 GENOMICS INITIATIVE (BSGI) REVDAT 3 20-SEP-23 4IOT 1 REMARK REVDAT 2 05-JUN-13 4IOT 1 JRNL REVDAT 1 23-JAN-13 4IOT 0 JRNL AUTH G.KOZLOV,R.VINAIK,K.GEHRING JRNL TITL TRIOSEPHOSPHATE ISOMERASE IS A COMMON CRYSTALLIZATION JRNL TITL 2 CONTAMINANT OF SOLUBLE HIS-TAGGED PROTEINS PRODUCED IN JRNL TITL 3 ESCHERICHIA COLI. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 499 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23695562 JRNL DOI 10.1107/S1744309113010841 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2049 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2612 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 474 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.195 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3899 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5286 ; 1.037 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 4.698 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;38.879 ;25.337 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 676 ;12.912 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.431 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2921 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1877 ; 0.182 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2686 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 398 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2634 ; 0.426 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4038 ; 0.656 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1443 ; 1.273 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1238 ; 2.056 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8250 4.9710 -6.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.0287 REMARK 3 T33: 0.0428 T12: -0.0220 REMARK 3 T13: -0.0096 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.3937 L22: 1.9630 REMARK 3 L33: 1.9693 L12: -0.8764 REMARK 3 L13: 0.3618 L23: -0.1762 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: -0.1268 S13: -0.1497 REMARK 3 S21: 0.1576 S22: 0.0845 S23: 0.0085 REMARK 3 S31: 0.1143 S32: 0.0591 S33: -0.0534 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0430 14.2640 -6.7230 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.0576 REMARK 3 T33: 0.0428 T12: -0.0103 REMARK 3 T13: 0.0116 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.4401 L22: 4.4684 REMARK 3 L33: 0.8076 L12: -2.5249 REMARK 3 L13: 0.8123 L23: -0.7213 REMARK 3 S TENSOR REMARK 3 S11: -0.1369 S12: -0.1673 S13: 0.1872 REMARK 3 S21: 0.2051 S22: 0.1473 S23: -0.0856 REMARK 3 S31: -0.0765 S32: 0.0291 S33: -0.0105 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7040 20.7680 -18.7010 REMARK 3 T TENSOR REMARK 3 T11: 0.0338 T22: 0.0491 REMARK 3 T33: 0.0385 T12: -0.0147 REMARK 3 T13: 0.0020 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.4416 L22: 3.3110 REMARK 3 L33: 0.9483 L12: -0.2873 REMARK 3 L13: -0.4151 L23: -1.0503 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.0283 S13: 0.0783 REMARK 3 S21: -0.0303 S22: 0.0724 S23: -0.1152 REMARK 3 S31: 0.0102 S32: -0.0327 S33: -0.0409 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8260 9.0440 -28.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: 0.0695 REMARK 3 T33: 0.0375 T12: -0.0088 REMARK 3 T13: 0.0014 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.3404 L22: 1.9347 REMARK 3 L33: 1.5599 L12: -0.1347 REMARK 3 L13: 0.1619 L23: 0.5210 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: 0.1228 S13: -0.1151 REMARK 3 S21: -0.1732 S22: -0.0067 S23: 0.0769 REMARK 3 S31: 0.0674 S32: -0.1713 S33: -0.0146 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6320 -0.0990 -30.6050 REMARK 3 T TENSOR REMARK 3 T11: 0.1354 T22: 0.0785 REMARK 3 T33: 0.0232 T12: -0.0102 REMARK 3 T13: -0.0098 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 1.9273 L22: 2.8141 REMARK 3 L33: 1.8181 L12: 0.3619 REMARK 3 L13: -0.8860 L23: -0.7511 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.1100 S13: -0.0691 REMARK 3 S21: -0.1668 S22: 0.0191 S23: 0.0362 REMARK 3 S31: 0.2425 S32: -0.0050 S33: -0.0156 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4780 -4.0170 -18.2400 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.0011 REMARK 3 T33: 0.0314 T12: -0.0101 REMARK 3 T13: -0.0323 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.6230 L22: 1.7173 REMARK 3 L33: 3.4283 L12: -0.1230 REMARK 3 L13: 0.1498 L23: -0.4322 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.0449 S13: -0.1515 REMARK 3 S21: -0.0771 S22: 0.1059 S23: 0.0631 REMARK 3 S31: 0.4769 S32: -0.0056 S33: -0.0980 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 240 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2450 -5.9640 -9.1150 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.0105 REMARK 3 T33: 0.0325 T12: -0.0124 REMARK 3 T13: -0.0514 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 8.1140 L22: 7.0935 REMARK 3 L33: 8.8075 L12: -3.6440 REMARK 3 L13: -4.4629 L23: 1.7360 REMARK 3 S TENSOR REMARK 3 S11: -0.2422 S12: -0.4359 S13: -0.2820 REMARK 3 S21: 0.3207 S22: 0.2349 S23: -0.1002 REMARK 3 S31: 0.5718 S32: 0.3743 S33: 0.0073 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 17 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5140 36.6380 -11.9420 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.0698 REMARK 3 T33: 0.0904 T12: -0.0237 REMARK 3 T13: -0.0048 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 2.5838 L22: 3.1413 REMARK 3 L33: 1.0510 L12: -1.4903 REMARK 3 L13: 0.2567 L23: 0.6264 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: -0.0933 S13: 0.0123 REMARK 3 S21: 0.0673 S22: 0.0159 S23: 0.0721 REMARK 3 S31: -0.0646 S32: -0.0608 S33: -0.0373 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 51 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5350 35.3920 -6.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.0290 T22: 0.0245 REMARK 3 T33: 0.0252 T12: -0.0108 REMARK 3 T13: -0.0206 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.5157 L22: 3.9841 REMARK 3 L33: 0.9751 L12: -1.1029 REMARK 3 L13: -0.3959 L23: 0.6679 REMARK 3 S TENSOR REMARK 3 S11: -0.0721 S12: -0.1595 S13: 0.1782 REMARK 3 S21: 0.2514 S22: 0.1134 S23: -0.2488 REMARK 3 S31: -0.0589 S32: 0.1417 S33: -0.0413 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 52 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4890 23.3680 -9.4590 REMARK 3 T TENSOR REMARK 3 T11: 0.0180 T22: 0.0440 REMARK 3 T33: 0.0474 T12: -0.0010 REMARK 3 T13: -0.0029 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.6533 L22: 3.1378 REMARK 3 L33: 0.7462 L12: -0.1421 REMARK 3 L13: -0.4312 L23: 0.6597 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: -0.0565 S13: -0.0498 REMARK 3 S21: 0.1694 S22: 0.1053 S23: -0.0042 REMARK 3 S31: 0.0335 S32: 0.0659 S33: -0.0420 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3940 27.2210 -19.7040 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.0680 REMARK 3 T33: 0.0683 T12: -0.0058 REMARK 3 T13: -0.0145 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.5416 L22: 1.8913 REMARK 3 L33: 2.5815 L12: 0.0906 REMARK 3 L13: 0.4086 L23: 0.3891 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: 0.2364 S13: -0.0592 REMARK 3 S21: -0.0818 S22: 0.0242 S23: 0.0330 REMARK 3 S31: 0.0085 S32: -0.0251 S33: -0.0339 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1590 40.3300 -33.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.0681 T22: 0.1128 REMARK 3 T33: 0.0460 T12: -0.0453 REMARK 3 T13: -0.0140 T23: 0.0827 REMARK 3 L TENSOR REMARK 3 L11: 2.7114 L22: 4.9253 REMARK 3 L33: 12.4296 L12: -1.0295 REMARK 3 L13: 1.4384 L23: -5.5147 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: 0.4050 S13: 0.2342 REMARK 3 S21: -0.4122 S22: 0.1024 S23: -0.0270 REMARK 3 S31: -0.0191 S32: -0.1694 S33: -0.0820 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 139 B 229 REMARK 3 ORIGIN FOR THE GROUP (A): -25.6430 41.9060 -20.9820 REMARK 3 T TENSOR REMARK 3 T11: 0.0287 T22: 0.0830 REMARK 3 T33: 0.0788 T12: 0.0084 REMARK 3 T13: -0.0040 T23: 0.0649 REMARK 3 L TENSOR REMARK 3 L11: 1.8565 L22: 2.4022 REMARK 3 L33: 1.4932 L12: 0.5001 REMARK 3 L13: 0.3745 L23: 0.4105 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: 0.1706 S13: 0.2442 REMARK 3 S21: -0.0958 S22: 0.0315 S23: 0.0492 REMARK 3 S31: -0.1309 S32: 0.0450 S33: 0.0279 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 230 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0090 46.3720 -11.1550 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.0516 REMARK 3 T33: 0.1113 T12: -0.0310 REMARK 3 T13: 0.0172 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 3.6953 L22: 4.7279 REMARK 3 L33: 3.0784 L12: -1.2567 REMARK 3 L13: 0.7265 L23: 1.2722 REMARK 3 S TENSOR REMARK 3 S11: -0.1232 S12: -0.0691 S13: 0.2575 REMARK 3 S21: 0.1421 S22: 0.1203 S23: -0.1575 REMARK 3 S31: -0.1786 S32: -0.0243 S33: 0.0029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97670 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38754 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 75.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 20.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40400 REMARK 200 FOR SHELL : 2.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TRE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS AND 20% PEG5000 MME, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.23500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.17700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.72600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.17700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.23500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.72600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 255 REMARK 465 ALA B 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 16 O HOH B 444 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -144.23 54.28 REMARK 500 LYS B 11 -145.74 51.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 DBREF 4IOT A 1 255 UNP B1XB85 TPIS_ECODH 1 255 DBREF 4IOT B 1 255 UNP B1XB85 TPIS_ECODH 1 255 SEQRES 1 A 255 MET ARG HIS PRO LEU VAL MET GLY ASN TRP LYS LEU ASN SEQRES 2 A 255 GLY SER ARG HIS MET VAL HIS GLU LEU VAL SER ASN LEU SEQRES 3 A 255 ARG LYS GLU LEU ALA GLY VAL ALA GLY CYS ALA VAL ALA SEQRES 4 A 255 ILE ALA PRO PRO GLU MET TYR ILE ASP MET ALA LYS ARG SEQRES 5 A 255 GLU ALA GLU GLY SER HIS ILE MET LEU GLY ALA GLN ASN SEQRES 6 A 255 VAL ASP LEU ASN LEU SER GLY ALA PHE THR GLY GLU THR SEQRES 7 A 255 SER ALA ALA MET LEU LYS ASP ILE GLY ALA GLN TYR ILE SEQRES 8 A 255 ILE ILE GLY HIS SER GLU ARG ARG THR TYR HIS LYS GLU SEQRES 9 A 255 SER ASP GLU LEU ILE ALA LYS LYS PHE ALA VAL LEU LYS SEQRES 10 A 255 GLU GLN GLY LEU THR PRO VAL LEU CYS ILE GLY GLU THR SEQRES 11 A 255 GLU ALA GLU ASN GLU ALA GLY LYS THR GLU GLU VAL CYS SEQRES 12 A 255 ALA ARG GLN ILE ASP ALA VAL LEU LYS THR GLN GLY ALA SEQRES 13 A 255 ALA ALA PHE GLU GLY ALA VAL ILE ALA TYR GLU PRO VAL SEQRES 14 A 255 TRP ALA ILE GLY THR GLY LYS SER ALA THR PRO ALA GLN SEQRES 15 A 255 ALA GLN ALA VAL HIS LYS PHE ILE ARG ASP HIS ILE ALA SEQRES 16 A 255 LYS VAL ASP ALA ASN ILE ALA GLU GLN VAL ILE ILE GLN SEQRES 17 A 255 TYR GLY GLY SER VAL ASN ALA SER ASN ALA ALA GLU LEU SEQRES 18 A 255 PHE ALA GLN PRO ASP ILE ASP GLY ALA LEU VAL GLY GLY SEQRES 19 A 255 ALA SER LEU LYS ALA ASP ALA PHE ALA VAL ILE VAL LYS SEQRES 20 A 255 ALA ALA GLU ALA ALA LYS GLN ALA SEQRES 1 B 255 MET ARG HIS PRO LEU VAL MET GLY ASN TRP LYS LEU ASN SEQRES 2 B 255 GLY SER ARG HIS MET VAL HIS GLU LEU VAL SER ASN LEU SEQRES 3 B 255 ARG LYS GLU LEU ALA GLY VAL ALA GLY CYS ALA VAL ALA SEQRES 4 B 255 ILE ALA PRO PRO GLU MET TYR ILE ASP MET ALA LYS ARG SEQRES 5 B 255 GLU ALA GLU GLY SER HIS ILE MET LEU GLY ALA GLN ASN SEQRES 6 B 255 VAL ASP LEU ASN LEU SER GLY ALA PHE THR GLY GLU THR SEQRES 7 B 255 SER ALA ALA MET LEU LYS ASP ILE GLY ALA GLN TYR ILE SEQRES 8 B 255 ILE ILE GLY HIS SER GLU ARG ARG THR TYR HIS LYS GLU SEQRES 9 B 255 SER ASP GLU LEU ILE ALA LYS LYS PHE ALA VAL LEU LYS SEQRES 10 B 255 GLU GLN GLY LEU THR PRO VAL LEU CYS ILE GLY GLU THR SEQRES 11 B 255 GLU ALA GLU ASN GLU ALA GLY LYS THR GLU GLU VAL CYS SEQRES 12 B 255 ALA ARG GLN ILE ASP ALA VAL LEU LYS THR GLN GLY ALA SEQRES 13 B 255 ALA ALA PHE GLU GLY ALA VAL ILE ALA TYR GLU PRO VAL SEQRES 14 B 255 TRP ALA ILE GLY THR GLY LYS SER ALA THR PRO ALA GLN SEQRES 15 B 255 ALA GLN ALA VAL HIS LYS PHE ILE ARG ASP HIS ILE ALA SEQRES 16 B 255 LYS VAL ASP ALA ASN ILE ALA GLU GLN VAL ILE ILE GLN SEQRES 17 B 255 TYR GLY GLY SER VAL ASN ALA SER ASN ALA ALA GLU LEU SEQRES 18 B 255 PHE ALA GLN PRO ASP ILE ASP GLY ALA LEU VAL GLY GLY SEQRES 19 B 255 ALA SER LEU LYS ALA ASP ALA PHE ALA VAL ILE VAL LYS SEQRES 20 B 255 ALA ALA GLU ALA ALA LYS GLN ALA HET SO4 A 301 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *474(H2 O) HELIX 1 1 SER A 15 ALA A 31 1 17 HELIX 2 2 PRO A 43 MET A 45 5 3 HELIX 3 3 TYR A 46 GLU A 55 1 10 HELIX 4 4 SER A 79 GLY A 87 1 9 HELIX 5 5 HIS A 95 HIS A 102 1 8 HELIX 6 6 SER A 105 GLN A 119 1 15 HELIX 7 7 THR A 130 ALA A 136 1 7 HELIX 8 8 LYS A 138 GLY A 155 1 18 HELIX 9 9 ALA A 156 GLU A 160 5 5 HELIX 10 10 PRO A 168 ILE A 172 5 5 HELIX 11 11 THR A 179 LYS A 196 1 18 HELIX 12 12 ASP A 198 VAL A 205 1 8 HELIX 13 13 ASN A 217 ALA A 223 1 7 HELIX 14 14 GLY A 233 LEU A 237 5 5 HELIX 15 15 LYS A 238 GLN A 254 1 17 HELIX 16 16 SER B 15 LEU B 30 1 16 HELIX 17 17 PRO B 43 MET B 45 5 3 HELIX 18 18 TYR B 46 ALA B 54 1 9 HELIX 19 19 SER B 79 GLY B 87 1 9 HELIX 20 20 HIS B 95 HIS B 102 1 8 HELIX 21 21 SER B 105 GLY B 120 1 16 HELIX 22 22 THR B 130 ALA B 136 1 7 HELIX 23 23 LYS B 138 GLY B 155 1 18 HELIX 24 24 ALA B 156 GLU B 160 5 5 HELIX 25 25 PRO B 168 ILE B 172 5 5 HELIX 26 26 THR B 179 LYS B 196 1 18 HELIX 27 27 ASP B 198 VAL B 205 1 8 HELIX 28 28 ASN B 217 ALA B 223 1 7 HELIX 29 29 GLY B 233 LEU B 237 5 5 HELIX 30 30 LYS B 238 GLN B 254 1 17 SHEET 1 A 9 LEU A 5 ASN A 9 0 SHEET 2 A 9 ALA A 37 ALA A 41 1 O ALA A 41 N GLY A 8 SHEET 3 A 9 ILE A 59 ALA A 63 1 O MET A 60 N VAL A 38 SHEET 4 A 9 ALA A 88 ILE A 93 1 O ILE A 92 N ALA A 63 SHEET 5 A 9 THR A 122 ILE A 127 1 O THR A 122 N GLN A 89 SHEET 6 A 9 VAL A 163 TYR A 166 1 O ALA A 165 N LEU A 125 SHEET 7 A 9 ILE A 206 TYR A 209 1 O GLN A 208 N ILE A 164 SHEET 8 A 9 GLY A 229 VAL A 232 1 O GLY A 229 N TYR A 209 SHEET 9 A 9 LEU A 5 ASN A 9 1 N MET A 7 O VAL A 232 SHEET 1 B 9 LEU B 5 ASN B 9 0 SHEET 2 B 9 ALA B 37 ALA B 41 1 O ALA B 39 N GLY B 8 SHEET 3 B 9 MET B 60 ALA B 63 1 O MET B 60 N VAL B 38 SHEET 4 B 9 TYR B 90 ILE B 93 1 O ILE B 92 N ALA B 63 SHEET 5 B 9 THR B 122 ILE B 127 1 O CYS B 126 N ILE B 93 SHEET 6 B 9 VAL B 163 TYR B 166 1 O VAL B 163 N LEU B 125 SHEET 7 B 9 ILE B 206 TYR B 209 1 O GLN B 208 N ILE B 164 SHEET 8 B 9 GLY B 229 VAL B 232 1 O GLY B 229 N TYR B 209 SHEET 9 B 9 LEU B 5 ASN B 9 1 N MET B 7 O VAL B 232 SITE 1 AC1 5 SER A 212 GLY A 234 HOH A 432 HOH A 541 SITE 2 AC1 5 HOH A 642 CRYST1 46.470 67.452 150.354 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021519 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006651 0.00000