data_4IP9 # _entry.id 4IP9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4IP9 pdb_00004ip9 10.2210/pdb4ip9/pdb RCSB RCSB077036 ? ? WWPDB D_1000077036 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-26 2 'Structure model' 1 1 2014-05-14 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4IP9 _pdbx_database_status.recvd_initial_deposition_date 2013-01-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4IP8 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lu, J.' 1 'Sun, P.D.' 2 # _citation.id primary _citation.title 'Structural mechanism of serum amyloid A-mediated inflammatory amyloidosis.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 111 _citation.page_first 5189 _citation.page_last 5194 _citation.year 2014 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24706838 _citation.pdbx_database_id_DOI 10.1073/pnas.1322357111 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lu, J.' 1 ? primary 'Yu, Y.' 2 ? primary 'Zhu, I.' 3 ? primary 'Cheng, Y.' 4 ? primary 'Sun, P.D.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Serum amyloid A-1 protein' 12659.771 2 ? ? ? ? 2 non-polymer syn 'O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL' 324.367 6 ? ? ? ? 3 water nat water 18.015 6 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;SAA, Amyloid protein A, Amyloid fibril protein AA, Serum amyloid protein A(2-104), Serum amyloid protein A(3-104), Serum amyloid protein A(2-103), Serum amyloid protein A(2-102), Serum amyloid protein A(4-101) ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGVWAAEAISDARENIQRFFGHGA EDSLADQAANEWGRSGKDPNHFRPAGLPEKY ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGVWAAEAISDARENIQRFFGHGA EDSLADQAANEWGRSGKDPNHFRPAGLPEKY ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL' P4C 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 ARG n 1 9 SER n 1 10 PHE n 1 11 PHE n 1 12 SER n 1 13 PHE n 1 14 LEU n 1 15 GLY n 1 16 GLU n 1 17 ALA n 1 18 PHE n 1 19 ASP n 1 20 GLY n 1 21 ALA n 1 22 ARG n 1 23 ASP n 1 24 MET n 1 25 TRP n 1 26 ARG n 1 27 ALA n 1 28 TYR n 1 29 SER n 1 30 ASP n 1 31 MET n 1 32 ARG n 1 33 GLU n 1 34 ALA n 1 35 ASN n 1 36 TYR n 1 37 ILE n 1 38 GLY n 1 39 SER n 1 40 ASP n 1 41 LYS n 1 42 TYR n 1 43 PHE n 1 44 HIS n 1 45 ALA n 1 46 ARG n 1 47 GLY n 1 48 ASN n 1 49 TYR n 1 50 ASP n 1 51 ALA n 1 52 ALA n 1 53 LYS n 1 54 ARG n 1 55 GLY n 1 56 PRO n 1 57 GLY n 1 58 GLY n 1 59 VAL n 1 60 TRP n 1 61 ALA n 1 62 ALA n 1 63 GLU n 1 64 ALA n 1 65 ILE n 1 66 SER n 1 67 ASP n 1 68 ALA n 1 69 ARG n 1 70 GLU n 1 71 ASN n 1 72 ILE n 1 73 GLN n 1 74 ARG n 1 75 PHE n 1 76 PHE n 1 77 GLY n 1 78 HIS n 1 79 GLY n 1 80 ALA n 1 81 GLU n 1 82 ASP n 1 83 SER n 1 84 LEU n 1 85 ALA n 1 86 ASP n 1 87 GLN n 1 88 ALA n 1 89 ALA n 1 90 ASN n 1 91 GLU n 1 92 TRP n 1 93 GLY n 1 94 ARG n 1 95 SER n 1 96 GLY n 1 97 LYS n 1 98 ASP n 1 99 PRO n 1 100 ASN n 1 101 HIS n 1 102 PHE n 1 103 ARG n 1 104 PRO n 1 105 ALA n 1 106 GLY n 1 107 LEU n 1 108 PRO n 1 109 GLU n 1 110 LYS n 1 111 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SAA1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 P4C non-polymer . 'O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL' 'POLYETHYLENE 400' 'C14 H28 O8' 324.367 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -6 ? ? ? A . n A 1 2 HIS 2 -5 ? ? ? A . n A 1 3 HIS 3 -4 ? ? ? A . n A 1 4 HIS 4 -3 ? ? ? A . n A 1 5 HIS 5 -2 ? ? ? A . n A 1 6 HIS 6 -1 ? ? ? A . n A 1 7 HIS 7 0 ? ? ? A . n A 1 8 ARG 8 1 1 ARG ARG A . n A 1 9 SER 9 2 2 SER SER A . n A 1 10 PHE 10 3 3 PHE PHE A . n A 1 11 PHE 11 4 4 PHE PHE A . n A 1 12 SER 12 5 5 SER SER A . n A 1 13 PHE 13 6 6 PHE PHE A . n A 1 14 LEU 14 7 7 LEU LEU A . n A 1 15 GLY 15 8 8 GLY GLY A . n A 1 16 GLU 16 9 9 GLU GLU A . n A 1 17 ALA 17 10 10 ALA ALA A . n A 1 18 PHE 18 11 11 PHE PHE A . n A 1 19 ASP 19 12 12 ASP ASP A . n A 1 20 GLY 20 13 13 GLY GLY A . n A 1 21 ALA 21 14 14 ALA ALA A . n A 1 22 ARG 22 15 15 ARG ARG A . n A 1 23 ASP 23 16 16 ASP ASP A . n A 1 24 MET 24 17 17 MET MET A . n A 1 25 TRP 25 18 18 TRP TRP A . n A 1 26 ARG 26 19 19 ARG ARG A . n A 1 27 ALA 27 20 20 ALA ALA A . n A 1 28 TYR 28 21 21 TYR TYR A . n A 1 29 SER 29 22 22 SER SER A . n A 1 30 ASP 30 23 23 ASP ASP A . n A 1 31 MET 31 24 24 MET MET A . n A 1 32 ARG 32 25 25 ARG ARG A . n A 1 33 GLU 33 26 26 GLU GLU A . n A 1 34 ALA 34 27 27 ALA ALA A . n A 1 35 ASN 35 28 28 ASN ASN A . n A 1 36 TYR 36 29 29 TYR TYR A . n A 1 37 ILE 37 30 30 ILE ILE A . n A 1 38 GLY 38 31 31 GLY GLY A . n A 1 39 SER 39 32 32 SER SER A . n A 1 40 ASP 40 33 33 ASP ASP A . n A 1 41 LYS 41 34 34 LYS LYS A . n A 1 42 TYR 42 35 35 TYR TYR A . n A 1 43 PHE 43 36 36 PHE PHE A . n A 1 44 HIS 44 37 37 HIS HIS A . n A 1 45 ALA 45 38 38 ALA ALA A . n A 1 46 ARG 46 39 39 ARG ARG A . n A 1 47 GLY 47 40 40 GLY GLY A . n A 1 48 ASN 48 41 41 ASN ASN A . n A 1 49 TYR 49 42 42 TYR TYR A . n A 1 50 ASP 50 43 43 ASP ASP A . n A 1 51 ALA 51 44 44 ALA ALA A . n A 1 52 ALA 52 45 45 ALA ALA A . n A 1 53 LYS 53 46 46 LYS LYS A . n A 1 54 ARG 54 47 47 ARG ARG A . n A 1 55 GLY 55 48 48 GLY GLY A . n A 1 56 PRO 56 49 49 PRO PRO A . n A 1 57 GLY 57 50 50 GLY GLY A . n A 1 58 GLY 58 51 51 GLY GLY A . n A 1 59 VAL 59 52 52 VAL VAL A . n A 1 60 TRP 60 53 53 TRP TRP A . n A 1 61 ALA 61 54 54 ALA ALA A . n A 1 62 ALA 62 55 55 ALA ALA A . n A 1 63 GLU 63 56 56 GLU GLU A . n A 1 64 ALA 64 57 57 ALA ALA A . n A 1 65 ILE 65 58 58 ILE ILE A . n A 1 66 SER 66 59 59 SER SER A . n A 1 67 ASP 67 60 60 ASP ASP A . n A 1 68 ALA 68 61 61 ALA ALA A . n A 1 69 ARG 69 62 62 ARG ARG A . n A 1 70 GLU 70 63 63 GLU GLU A . n A 1 71 ASN 71 64 64 ASN ASN A . n A 1 72 ILE 72 65 65 ILE ILE A . n A 1 73 GLN 73 66 66 GLN GLN A . n A 1 74 ARG 74 67 67 ARG ARG A . n A 1 75 PHE 75 68 68 PHE PHE A . n A 1 76 PHE 76 69 69 PHE PHE A . n A 1 77 GLY 77 70 70 GLY GLY A . n A 1 78 HIS 78 71 71 HIS HIS A . n A 1 79 GLY 79 72 72 GLY GLY A . n A 1 80 ALA 80 73 73 ALA ALA A . n A 1 81 GLU 81 74 74 GLU GLU A . n A 1 82 ASP 82 75 75 ASP ASP A . n A 1 83 SER 83 76 76 SER SER A . n A 1 84 LEU 84 77 77 LEU LEU A . n A 1 85 ALA 85 78 78 ALA ALA A . n A 1 86 ASP 86 79 79 ASP ASP A . n A 1 87 GLN 87 80 80 GLN GLN A . n A 1 88 ALA 88 81 81 ALA ALA A . n A 1 89 ALA 89 82 82 ALA ALA A . n A 1 90 ASN 90 83 83 ASN ASN A . n A 1 91 GLU 91 84 84 GLU GLU A . n A 1 92 TRP 92 85 85 TRP TRP A . n A 1 93 GLY 93 86 86 GLY GLY A . n A 1 94 ARG 94 87 87 ARG ARG A . n A 1 95 SER 95 88 88 SER SER A . n A 1 96 GLY 96 89 89 GLY GLY A . n A 1 97 LYS 97 90 90 LYS LYS A . n A 1 98 ASP 98 91 91 ASP ASP A . n A 1 99 PRO 99 92 92 PRO PRO A . n A 1 100 ASN 100 93 93 ASN ASN A . n A 1 101 HIS 101 94 94 HIS HIS A . n A 1 102 PHE 102 95 95 PHE PHE A . n A 1 103 ARG 103 96 96 ARG ARG A . n A 1 104 PRO 104 97 97 PRO PRO A . n A 1 105 ALA 105 98 98 ALA ALA A . n A 1 106 GLY 106 99 99 GLY GLY A . n A 1 107 LEU 107 100 100 LEU LEU A . n A 1 108 PRO 108 101 101 PRO PRO A . n A 1 109 GLU 109 102 102 GLU GLU A . n A 1 110 LYS 110 103 103 LYS LYS A . n A 1 111 TYR 111 104 104 TYR TYR A . n B 1 1 MET 1 -6 ? ? ? B . n B 1 2 HIS 2 -5 ? ? ? B . n B 1 3 HIS 3 -4 ? ? ? B . n B 1 4 HIS 4 -3 ? ? ? B . n B 1 5 HIS 5 -2 ? ? ? B . n B 1 6 HIS 6 -1 ? ? ? B . n B 1 7 HIS 7 0 ? ? ? B . n B 1 8 ARG 8 1 1 ARG ARG B . n B 1 9 SER 9 2 2 SER SER B . n B 1 10 PHE 10 3 3 PHE PHE B . n B 1 11 PHE 11 4 4 PHE PHE B . n B 1 12 SER 12 5 5 SER SER B . n B 1 13 PHE 13 6 6 PHE PHE B . n B 1 14 LEU 14 7 7 LEU LEU B . n B 1 15 GLY 15 8 8 GLY GLY B . n B 1 16 GLU 16 9 9 GLU GLU B . n B 1 17 ALA 17 10 10 ALA ALA B . n B 1 18 PHE 18 11 11 PHE PHE B . n B 1 19 ASP 19 12 12 ASP ASP B . n B 1 20 GLY 20 13 13 GLY GLY B . n B 1 21 ALA 21 14 14 ALA ALA B . n B 1 22 ARG 22 15 15 ARG ARG B . n B 1 23 ASP 23 16 16 ASP ASP B . n B 1 24 MET 24 17 17 MET MET B . n B 1 25 TRP 25 18 18 TRP TRP B . n B 1 26 ARG 26 19 19 ARG ARG B . n B 1 27 ALA 27 20 20 ALA ALA B . n B 1 28 TYR 28 21 21 TYR TYR B . n B 1 29 SER 29 22 22 SER SER B . n B 1 30 ASP 30 23 23 ASP ASP B . n B 1 31 MET 31 24 24 MET MET B . n B 1 32 ARG 32 25 25 ARG ARG B . n B 1 33 GLU 33 26 26 GLU GLU B . n B 1 34 ALA 34 27 27 ALA ALA B . n B 1 35 ASN 35 28 28 ASN ASN B . n B 1 36 TYR 36 29 29 TYR TYR B . n B 1 37 ILE 37 30 30 ILE ILE B . n B 1 38 GLY 38 31 31 GLY GLY B . n B 1 39 SER 39 32 32 SER SER B . n B 1 40 ASP 40 33 33 ASP ASP B . n B 1 41 LYS 41 34 34 LYS LYS B . n B 1 42 TYR 42 35 35 TYR TYR B . n B 1 43 PHE 43 36 36 PHE PHE B . n B 1 44 HIS 44 37 37 HIS HIS B . n B 1 45 ALA 45 38 38 ALA ALA B . n B 1 46 ARG 46 39 39 ARG ARG B . n B 1 47 GLY 47 40 40 GLY GLY B . n B 1 48 ASN 48 41 41 ASN ASN B . n B 1 49 TYR 49 42 42 TYR TYR B . n B 1 50 ASP 50 43 43 ASP ASP B . n B 1 51 ALA 51 44 44 ALA ALA B . n B 1 52 ALA 52 45 45 ALA ALA B . n B 1 53 LYS 53 46 46 LYS LYS B . n B 1 54 ARG 54 47 47 ARG ARG B . n B 1 55 GLY 55 48 48 GLY GLY B . n B 1 56 PRO 56 49 49 PRO PRO B . n B 1 57 GLY 57 50 50 GLY GLY B . n B 1 58 GLY 58 51 51 GLY GLY B . n B 1 59 VAL 59 52 52 VAL VAL B . n B 1 60 TRP 60 53 53 TRP TRP B . n B 1 61 ALA 61 54 54 ALA ALA B . n B 1 62 ALA 62 55 55 ALA ALA B . n B 1 63 GLU 63 56 56 GLU GLU B . n B 1 64 ALA 64 57 57 ALA ALA B . n B 1 65 ILE 65 58 58 ILE ILE B . n B 1 66 SER 66 59 59 SER SER B . n B 1 67 ASP 67 60 60 ASP ASP B . n B 1 68 ALA 68 61 61 ALA ALA B . n B 1 69 ARG 69 62 62 ARG ARG B . n B 1 70 GLU 70 63 63 GLU GLU B . n B 1 71 ASN 71 64 64 ASN ASN B . n B 1 72 ILE 72 65 65 ILE ILE B . n B 1 73 GLN 73 66 66 GLN GLN B . n B 1 74 ARG 74 67 67 ARG ARG B . n B 1 75 PHE 75 68 68 PHE PHE B . n B 1 76 PHE 76 69 69 PHE PHE B . n B 1 77 GLY 77 70 70 GLY GLY B . n B 1 78 HIS 78 71 71 HIS HIS B . n B 1 79 GLY 79 72 72 GLY GLY B . n B 1 80 ALA 80 73 73 ALA ALA B . n B 1 81 GLU 81 74 74 GLU GLU B . n B 1 82 ASP 82 75 75 ASP ASP B . n B 1 83 SER 83 76 76 SER SER B . n B 1 84 LEU 84 77 77 LEU LEU B . n B 1 85 ALA 85 78 78 ALA ALA B . n B 1 86 ASP 86 79 79 ASP ASP B . n B 1 87 GLN 87 80 80 GLN GLN B . n B 1 88 ALA 88 81 81 ALA ALA B . n B 1 89 ALA 89 82 82 ALA ALA B . n B 1 90 ASN 90 83 83 ASN ASN B . n B 1 91 GLU 91 84 84 GLU GLU B . n B 1 92 TRP 92 85 85 TRP TRP B . n B 1 93 GLY 93 86 86 GLY GLY B . n B 1 94 ARG 94 87 87 ARG ARG B . n B 1 95 SER 95 88 88 SER SER B . n B 1 96 GLY 96 89 89 GLY GLY B . n B 1 97 LYS 97 90 90 LYS LYS B . n B 1 98 ASP 98 91 91 ASP ASP B . n B 1 99 PRO 99 92 92 PRO PRO B . n B 1 100 ASN 100 93 93 ASN ASN B . n B 1 101 HIS 101 94 94 HIS HIS B . n B 1 102 PHE 102 95 95 PHE PHE B . n B 1 103 ARG 103 96 96 ARG ARG B . n B 1 104 PRO 104 97 97 PRO PRO B . n B 1 105 ALA 105 98 98 ALA ALA B . n B 1 106 GLY 106 99 99 GLY GLY B . n B 1 107 LEU 107 100 100 LEU LEU B . n B 1 108 PRO 108 101 101 PRO PRO B . n B 1 109 GLU 109 102 102 GLU GLU B . n B 1 110 LYS 110 103 103 LYS LYS B . n B 1 111 TYR 111 104 104 TYR TYR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P4C 1 201 1 P4C P4C A . D 2 P4C 1 202 3 P4C P4C A . E 2 P4C 1 203 5 P4C P4C A . F 2 P4C 1 204 6 P4C P4C A . G 2 P4C 1 201 2 P4C P4C B . H 2 P4C 1 202 4 P4C P4C B . I 3 HOH 1 301 1 HOH HOH A . I 3 HOH 2 302 2 HOH HOH A . I 3 HOH 3 303 3 HOH HOH A . I 3 HOH 4 304 5 HOH HOH A . J 3 HOH 1 301 4 HOH HOH B . J 3 HOH 2 302 6 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A P4C 201 ? O1 ? C P4C 1 O1 2 1 N 1 A P4C 201 ? C14 ? C P4C 1 C14 3 1 N 1 A P4C 201 ? C15 ? C P4C 1 C15 4 1 N 1 A P4C 201 ? O16 ? C P4C 1 O16 5 1 N 1 A P4C 201 ? C17 ? C P4C 1 C17 6 1 N 1 A P4C 201 ? C18 ? C P4C 1 C18 7 1 N 1 A P4C 201 ? O19 ? C P4C 1 O19 8 1 N 1 A P4C 201 ? C20 ? C P4C 1 C20 9 1 N 1 A P4C 201 ? C21 ? C P4C 1 C21 10 1 N 1 A P4C 201 ? O22 ? C P4C 1 O22 11 1 N 1 A P4C 202 ? O13 ? D P4C 1 O13 12 1 N 1 A P4C 202 ? C14 ? D P4C 1 C14 13 1 N 1 A P4C 202 ? C15 ? D P4C 1 C15 14 1 N 1 A P4C 202 ? O16 ? D P4C 1 O16 15 1 N 1 A P4C 202 ? C17 ? D P4C 1 C17 16 1 N 1 A P4C 202 ? C18 ? D P4C 1 C18 17 1 N 1 A P4C 202 ? O19 ? D P4C 1 O19 18 1 N 1 A P4C 202 ? C20 ? D P4C 1 C20 19 1 N 1 A P4C 202 ? C21 ? D P4C 1 C21 20 1 N 1 A P4C 202 ? O22 ? D P4C 1 O22 21 1 N 1 A P4C 203 ? C11 ? E P4C 1 C11 22 1 N 1 A P4C 203 ? C12 ? E P4C 1 C12 23 1 N 1 A P4C 203 ? O13 ? E P4C 1 O13 24 1 N 1 A P4C 203 ? C14 ? E P4C 1 C14 25 1 N 1 A P4C 203 ? C15 ? E P4C 1 C15 26 1 N 1 A P4C 203 ? O16 ? E P4C 1 O16 27 1 N 1 A P4C 203 ? C17 ? E P4C 1 C17 28 1 N 1 A P4C 203 ? C18 ? E P4C 1 C18 29 1 N 1 A P4C 203 ? O19 ? E P4C 1 O19 30 1 N 1 A P4C 203 ? C20 ? E P4C 1 C20 31 1 N 1 A P4C 203 ? C21 ? E P4C 1 C21 32 1 N 1 A P4C 203 ? O22 ? E P4C 1 O22 33 1 N 1 B P4C 201 ? O13 ? G P4C 1 O13 34 1 N 1 B P4C 201 ? C14 ? G P4C 1 C14 35 1 N 1 B P4C 201 ? C15 ? G P4C 1 C15 36 1 N 1 B P4C 201 ? O16 ? G P4C 1 O16 37 1 N 1 B P4C 201 ? C17 ? G P4C 1 C17 38 1 N 1 B P4C 201 ? C18 ? G P4C 1 C18 39 1 N 1 B P4C 201 ? O19 ? G P4C 1 O19 40 1 N 1 B P4C 201 ? C20 ? G P4C 1 C20 41 1 N 1 B P4C 201 ? C21 ? G P4C 1 C21 42 1 N 1 B P4C 201 ? O22 ? G P4C 1 O22 43 1 N 1 B P4C 202 ? O13 ? H P4C 1 O13 44 1 N 1 B P4C 202 ? C14 ? H P4C 1 C14 45 1 N 1 B P4C 202 ? C15 ? H P4C 1 C15 46 1 N 1 B P4C 202 ? O16 ? H P4C 1 O16 47 1 N 1 B P4C 202 ? C17 ? H P4C 1 C17 48 1 N 1 B P4C 202 ? C18 ? H P4C 1 C18 49 1 N 1 B P4C 202 ? O19 ? H P4C 1 O19 50 1 N 1 B P4C 202 ? C20 ? H P4C 1 C20 51 1 N 1 B P4C 202 ? C21 ? H P4C 1 C21 52 1 N 1 B P4C 202 ? O22 ? H P4C 1 O22 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 BUSTER refinement 2.8.0 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 4IP9 _cell.length_a 93.850 _cell.length_b 93.850 _cell.length_c 130.520 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IP9 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4IP9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '30% PEG2000 MME, 0.1M Tris (pH8.5) and 0.2 M Trimethylamine N-oxide, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2010-07-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 4IP9 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.5 _reflns.number_obs 7791 _reflns.number_all 7804 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.102 _reflns.pdbx_netI_over_sigmaI 16.2 _reflns.B_iso_Wilson_estimate 71.11 _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.54 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.511 _reflns_shell.meanI_over_sigI_obs 3 _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 376 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4IP9 _refine.ls_number_reflns_obs 7768 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.46 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2500 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2491 _refine.ls_R_factor_R_free 0.2584 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.68 _refine.ls_number_reflns_R_free 752 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9323 _refine.correlation_coeff_Fo_to_Fc_free 0.9244 _refine.B_iso_mean 82.50 _refine.aniso_B[1][1] 0.7458 _refine.aniso_B[2][2] 0.7458 _refine.aniso_B[3][3] -1.4915 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4IP9 _refine_analyze.Luzzati_coordinate_error_obs 0.595 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1658 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 80 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 1744 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 18.46 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_bond_d 0.008 ? 2.00 1782 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 0.86 ? 2.00 2366 HARMONIC 'X-RAY DIFFRACTION' t_dihedral_angle_d ? ? 2.00 638 SINUSOIDAL 'X-RAY DIFFRACTION' t_incorr_chiral_ct ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_trig_c_planes ? ? 2.00 48 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes ? ? 5.00 264 HARMONIC 'X-RAY DIFFRACTION' t_it ? ? 20.00 1782 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_omega_torsion 2.10 ? ? ? ? 'X-RAY DIFFRACTION' t_other_torsion 19.58 ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion ? ? 5.00 190 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact ? ? 4.00 1974 SEMIHARMONIC 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.79 _refine_ls_shell.number_reflns_R_work 1984 _refine_ls_shell.R_factor_R_work 0.2597 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3079 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 9.41 _refine_ls_shell.number_reflns_R_free 206 _refine_ls_shell.number_reflns_all 2190 _refine_ls_shell.R_factor_all 0.2641 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4IP9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4IP9 _struct.title 'Structure of native human serum amyloid A1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IP9 _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'double layer hexameric structure, secondary amyloid, High density lipoprotein, human serum, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SAA1_HUMAN _struct_ref.pdbx_db_accession P0DJI8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQ AANEWGRSGKDPNHFRPAGLPEKY ; _struct_ref.pdbx_align_begin 19 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4IP9 A 8 ? 111 ? P0DJI8 19 ? 122 ? 1 104 2 1 4IP9 B 8 ? 111 ? P0DJI8 19 ? 122 ? 1 104 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4IP9 MET A 1 ? UNP P0DJI8 ? ? 'expression tag' -6 1 1 4IP9 HIS A 2 ? UNP P0DJI8 ? ? 'expression tag' -5 2 1 4IP9 HIS A 3 ? UNP P0DJI8 ? ? 'expression tag' -4 3 1 4IP9 HIS A 4 ? UNP P0DJI8 ? ? 'expression tag' -3 4 1 4IP9 HIS A 5 ? UNP P0DJI8 ? ? 'expression tag' -2 5 1 4IP9 HIS A 6 ? UNP P0DJI8 ? ? 'expression tag' -1 6 1 4IP9 HIS A 7 ? UNP P0DJI8 ? ? 'expression tag' 0 7 2 4IP9 MET B 1 ? UNP P0DJI8 ? ? 'expression tag' -6 8 2 4IP9 HIS B 2 ? UNP P0DJI8 ? ? 'expression tag' -5 9 2 4IP9 HIS B 3 ? UNP P0DJI8 ? ? 'expression tag' -4 10 2 4IP9 HIS B 4 ? UNP P0DJI8 ? ? 'expression tag' -3 11 2 4IP9 HIS B 5 ? UNP P0DJI8 ? ? 'expression tag' -2 12 2 4IP9 HIS B 6 ? UNP P0DJI8 ? ? 'expression tag' -1 13 2 4IP9 HIS B 7 ? UNP P0DJI8 ? ? 'expression tag' 0 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8340 ? 1 MORE -57 ? 1 'SSA (A^2)' 31100 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 8 ? ASN A 35 ? ARG A 1 ASN A 28 1 ? 28 HELX_P HELX_P2 2 GLY A 38 ? ARG A 54 ? GLY A 31 ARG A 47 1 ? 17 HELX_P HELX_P3 3 GLY A 55 ? GLY A 77 ? GLY A 48 GLY A 70 1 ? 23 HELX_P HELX_P4 4 GLY A 79 ? SER A 95 ? GLY A 72 SER A 88 1 ? 17 HELX_P HELX_P5 5 ASP A 98 ? ARG A 103 ? ASP A 91 ARG A 96 5 ? 6 HELX_P HELX_P6 6 SER B 9 ? ASN B 35 ? SER B 2 ASN B 28 1 ? 27 HELX_P HELX_P7 7 SER B 39 ? ARG B 54 ? SER B 32 ARG B 47 1 ? 16 HELX_P HELX_P8 8 GLY B 55 ? GLY B 77 ? GLY B 48 GLY B 70 1 ? 23 HELX_P HELX_P9 9 GLY B 79 ? SER B 95 ? GLY B 72 SER B 88 1 ? 17 HELX_P HELX_P10 10 ASP B 98 ? ARG B 103 ? ASP B 91 ARG B 96 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A P4C 201 ? 4 'BINDING SITE FOR RESIDUE P4C A 201' AC2 Software A P4C 202 ? 5 'BINDING SITE FOR RESIDUE P4C A 202' AC3 Software A P4C 203 ? 4 'BINDING SITE FOR RESIDUE P4C A 203' AC4 Software A P4C 204 ? 7 'BINDING SITE FOR RESIDUE P4C A 204' AC5 Software B P4C 201 ? 6 'BINDING SITE FOR RESIDUE P4C B 201' AC6 Software B P4C 202 ? 4 'BINDING SITE FOR RESIDUE P4C B 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 PHE A 18 ? PHE A 11 . ? 2_555 ? 2 AC1 4 ARG A 22 ? ARG A 15 . ? 2_555 ? 3 AC1 4 ARG A 22 ? ARG A 15 . ? 1_555 ? 4 AC1 4 TRP A 25 ? TRP A 18 . ? 1_555 ? 5 AC2 5 ARG A 8 ? ARG A 1 . ? 1_555 ? 6 AC2 5 PHE A 11 ? PHE A 4 . ? 1_555 ? 7 AC2 5 SER A 12 ? SER A 5 . ? 1_555 ? 8 AC2 5 TRP A 25 ? TRP A 18 . ? 3_555 ? 9 AC2 5 ARG A 32 ? ARG A 25 . ? 3_555 ? 10 AC3 4 TRP A 25 ? TRP A 18 . ? 1_555 ? 11 AC3 4 ILE A 65 ? ILE A 58 . ? 1_555 ? 12 AC3 4 P4C F . ? P4C A 204 . ? 1_555 ? 13 AC3 4 P4C H . ? P4C B 202 . ? 1_555 ? 14 AC4 7 PHE A 11 ? PHE A 4 . ? 2_555 ? 15 AC4 7 ARG A 69 ? ARG A 62 . ? 1_555 ? 16 AC4 7 ILE A 72 ? ILE A 65 . ? 1_555 ? 17 AC4 7 GLN A 73 ? GLN A 66 . ? 1_555 ? 18 AC4 7 P4C E . ? P4C A 203 . ? 1_555 ? 19 AC4 7 PHE B 11 ? PHE B 4 . ? 3_555 ? 20 AC4 7 ALA B 68 ? ALA B 61 . ? 1_555 ? 21 AC5 6 ARG B 8 ? ARG B 1 . ? 1_555 ? 22 AC5 6 PHE B 11 ? PHE B 4 . ? 1_555 ? 23 AC5 6 SER B 12 ? SER B 5 . ? 1_555 ? 24 AC5 6 TRP B 25 ? TRP B 18 . ? 2_555 ? 25 AC5 6 ARG B 32 ? ARG B 25 . ? 2_555 ? 26 AC5 6 GLN B 73 ? GLN B 66 . ? 2_555 ? 27 AC6 4 P4C E . ? P4C A 203 . ? 1_555 ? 28 AC6 4 PHE B 18 ? PHE B 11 . ? 3_555 ? 29 AC6 4 ARG B 22 ? ARG B 15 . ? 3_555 ? 30 AC6 4 TRP B 25 ? TRP B 18 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CA A GLY 31 ? ? C A GLY 31 ? ? 1.615 1.514 0.101 0.016 N 2 1 C A GLY 31 ? ? O A GLY 31 ? ? 1.382 1.232 0.150 0.016 N 3 1 C A SER 32 ? ? O A SER 32 ? ? 1.084 1.229 -0.145 0.019 N 4 1 CB A ASP 33 ? ? CG A ASP 33 ? ? 1.292 1.513 -0.221 0.021 N 5 1 CA A ASP 33 ? ? C A ASP 33 ? ? 1.321 1.525 -0.204 0.026 N 6 1 C A ASP 33 ? ? O A ASP 33 ? ? 1.079 1.229 -0.150 0.019 N 7 1 C A LYS 34 ? ? O A LYS 34 ? ? 1.093 1.229 -0.136 0.019 N 8 1 CG A TYR 35 ? ? CD2 A TYR 35 ? ? 1.291 1.387 -0.096 0.013 N 9 1 CG A TYR 35 ? ? CD1 A TYR 35 ? ? 1.212 1.387 -0.175 0.013 N 10 1 CD1 A TYR 35 ? ? CE1 A TYR 35 ? ? 1.201 1.389 -0.188 0.015 N 11 1 CE1 A TYR 35 ? ? CZ A TYR 35 ? ? 1.177 1.381 -0.204 0.013 N 12 1 CZ A TYR 35 ? ? OH A TYR 35 ? ? 1.256 1.374 -0.118 0.017 N 13 1 CZ A TYR 35 ? ? CE2 A TYR 35 ? ? 1.161 1.381 -0.220 0.013 N 14 1 CE2 A TYR 35 ? ? CD2 A TYR 35 ? ? 1.227 1.389 -0.162 0.015 N 15 1 CG A PHE 36 ? ? CD2 A PHE 36 ? ? 1.251 1.383 -0.132 0.015 N 16 1 CG A PHE 36 ? ? CD1 A PHE 36 ? ? 1.235 1.383 -0.148 0.015 N 17 1 CD1 A PHE 36 ? ? CE1 A PHE 36 ? ? 1.208 1.388 -0.180 0.020 N 18 1 CE1 A PHE 36 ? ? CZ A PHE 36 ? ? 1.138 1.369 -0.231 0.019 N 19 1 CZ A PHE 36 ? ? CE2 A PHE 36 ? ? 1.160 1.369 -0.209 0.019 N 20 1 CE2 A PHE 36 ? ? CD2 A PHE 36 ? ? 1.176 1.388 -0.212 0.020 N 21 1 C A PHE 36 ? ? O A PHE 36 ? ? 1.081 1.229 -0.148 0.019 N 22 1 N A HIS 37 ? ? CA A HIS 37 ? ? 1.321 1.459 -0.138 0.020 N 23 1 CA A HIS 37 ? ? CB A HIS 37 ? ? 1.367 1.535 -0.168 0.022 N 24 1 C A HIS 37 ? ? O A HIS 37 ? ? 1.040 1.229 -0.189 0.019 N 25 1 C A ALA 38 ? ? O A ALA 38 ? ? 1.023 1.229 -0.206 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A GLY 31 ? ? CA A GLY 31 ? ? C A GLY 31 ? ? 128.37 113.10 15.27 2.50 N 2 1 CA A GLY 31 ? ? C A GLY 31 ? ? O A GLY 31 ? ? 137.88 120.60 17.28 1.80 N 3 1 CB A ASP 33 ? ? CG A ASP 33 ? ? OD1 A ASP 33 ? ? 111.09 118.30 -7.21 0.90 N 4 1 CD A LYS 34 ? ? CE A LYS 34 ? ? NZ A LYS 34 ? ? 90.61 111.70 -21.09 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 93 ? ? -56.03 -4.33 2 1 ASN B 93 ? ? -55.69 -5.89 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -5.5135 -16.2567 43.3841 -0.0356 -0.2420 -0.0094 -0.2130 -0.1830 0.2453 7.5296 4.0044 5.6889 -0.6010 1.2979 -0.9364 0.5102 -0.0541 -0.4561 -0.8481 -1.1896 -0.0313 0.2490 0.7172 -0.3381 'X-RAY DIFFRACTION' 2 ? refined -10.9944 -13.0755 17.6809 -0.0913 -0.1010 -0.0928 0.0528 -0.2246 -0.1064 4.9320 4.7281 5.0121 -0.1008 1.7898 0.6368 0.5613 -0.3371 -0.2242 0.7741 -0.3763 0.6718 -0.3764 -0.0931 -0.4843 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 104 '{ A|1 - A|104 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 B 104 '{ B|1 - B|104 }' ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -6 ? A MET 1 2 1 Y 1 A HIS -5 ? A HIS 2 3 1 Y 1 A HIS -4 ? A HIS 3 4 1 Y 1 A HIS -3 ? A HIS 4 5 1 Y 1 A HIS -2 ? A HIS 5 6 1 Y 1 A HIS -1 ? A HIS 6 7 1 Y 1 A HIS 0 ? A HIS 7 8 1 Y 1 B MET -6 ? B MET 1 9 1 Y 1 B HIS -5 ? B HIS 2 10 1 Y 1 B HIS -4 ? B HIS 3 11 1 Y 1 B HIS -3 ? B HIS 4 12 1 Y 1 B HIS -2 ? B HIS 5 13 1 Y 1 B HIS -1 ? B HIS 6 14 1 Y 1 B HIS 0 ? B HIS 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 P4C O1 O N N 236 P4C C2 C N N 237 P4C C3 C N N 238 P4C O4 O N N 239 P4C C5 C N N 240 P4C C6 C N N 241 P4C O7 O N N 242 P4C C8 C N N 243 P4C C9 C N N 244 P4C O10 O N N 245 P4C C11 C N N 246 P4C C12 C N N 247 P4C O13 O N N 248 P4C C14 C N N 249 P4C C15 C N N 250 P4C O16 O N N 251 P4C C17 C N N 252 P4C C18 C N N 253 P4C O19 O N N 254 P4C C20 C N N 255 P4C C21 C N N 256 P4C O22 O N N 257 P4C HO1 H N N 258 P4C H21A H N N 259 P4C H22 H N N 260 P4C H31 H N N 261 P4C H32 H N N 262 P4C H51 H N N 263 P4C H52 H N N 264 P4C H61 H N N 265 P4C H62 H N N 266 P4C H81 H N N 267 P4C H82 H N N 268 P4C H91 H N N 269 P4C H92 H N N 270 P4C H111 H N N 271 P4C H112 H N N 272 P4C H121 H N N 273 P4C H122 H N N 274 P4C H141 H N N 275 P4C H142 H N N 276 P4C H151 H N N 277 P4C H152 H N N 278 P4C H171 H N N 279 P4C H172 H N N 280 P4C H181 H N N 281 P4C H182 H N N 282 P4C H201 H N N 283 P4C H202 H N N 284 P4C H21 H N N 285 PHE N N N N 286 PHE CA C N S 287 PHE C C N N 288 PHE O O N N 289 PHE CB C N N 290 PHE CG C Y N 291 PHE CD1 C Y N 292 PHE CD2 C Y N 293 PHE CE1 C Y N 294 PHE CE2 C Y N 295 PHE CZ C Y N 296 PHE OXT O N N 297 PHE H H N N 298 PHE H2 H N N 299 PHE HA H N N 300 PHE HB2 H N N 301 PHE HB3 H N N 302 PHE HD1 H N N 303 PHE HD2 H N N 304 PHE HE1 H N N 305 PHE HE2 H N N 306 PHE HZ H N N 307 PHE HXT H N N 308 PRO N N N N 309 PRO CA C N S 310 PRO C C N N 311 PRO O O N N 312 PRO CB C N N 313 PRO CG C N N 314 PRO CD C N N 315 PRO OXT O N N 316 PRO H H N N 317 PRO HA H N N 318 PRO HB2 H N N 319 PRO HB3 H N N 320 PRO HG2 H N N 321 PRO HG3 H N N 322 PRO HD2 H N N 323 PRO HD3 H N N 324 PRO HXT H N N 325 SER N N N N 326 SER CA C N S 327 SER C C N N 328 SER O O N N 329 SER CB C N N 330 SER OG O N N 331 SER OXT O N N 332 SER H H N N 333 SER H2 H N N 334 SER HA H N N 335 SER HB2 H N N 336 SER HB3 H N N 337 SER HG H N N 338 SER HXT H N N 339 TRP N N N N 340 TRP CA C N S 341 TRP C C N N 342 TRP O O N N 343 TRP CB C N N 344 TRP CG C Y N 345 TRP CD1 C Y N 346 TRP CD2 C Y N 347 TRP NE1 N Y N 348 TRP CE2 C Y N 349 TRP CE3 C Y N 350 TRP CZ2 C Y N 351 TRP CZ3 C Y N 352 TRP CH2 C Y N 353 TRP OXT O N N 354 TRP H H N N 355 TRP H2 H N N 356 TRP HA H N N 357 TRP HB2 H N N 358 TRP HB3 H N N 359 TRP HD1 H N N 360 TRP HE1 H N N 361 TRP HE3 H N N 362 TRP HZ2 H N N 363 TRP HZ3 H N N 364 TRP HH2 H N N 365 TRP HXT H N N 366 TYR N N N N 367 TYR CA C N S 368 TYR C C N N 369 TYR O O N N 370 TYR CB C N N 371 TYR CG C Y N 372 TYR CD1 C Y N 373 TYR CD2 C Y N 374 TYR CE1 C Y N 375 TYR CE2 C Y N 376 TYR CZ C Y N 377 TYR OH O N N 378 TYR OXT O N N 379 TYR H H N N 380 TYR H2 H N N 381 TYR HA H N N 382 TYR HB2 H N N 383 TYR HB3 H N N 384 TYR HD1 H N N 385 TYR HD2 H N N 386 TYR HE1 H N N 387 TYR HE2 H N N 388 TYR HH H N N 389 TYR HXT H N N 390 VAL N N N N 391 VAL CA C N S 392 VAL C C N N 393 VAL O O N N 394 VAL CB C N N 395 VAL CG1 C N N 396 VAL CG2 C N N 397 VAL OXT O N N 398 VAL H H N N 399 VAL H2 H N N 400 VAL HA H N N 401 VAL HB H N N 402 VAL HG11 H N N 403 VAL HG12 H N N 404 VAL HG13 H N N 405 VAL HG21 H N N 406 VAL HG22 H N N 407 VAL HG23 H N N 408 VAL HXT H N N 409 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 P4C O1 C2 sing N N 224 P4C O1 HO1 sing N N 225 P4C C2 C3 sing N N 226 P4C C2 H21A sing N N 227 P4C C2 H22 sing N N 228 P4C C3 O4 sing N N 229 P4C C3 H31 sing N N 230 P4C C3 H32 sing N N 231 P4C O4 C5 sing N N 232 P4C C5 C6 sing N N 233 P4C C5 H51 sing N N 234 P4C C5 H52 sing N N 235 P4C C6 O7 sing N N 236 P4C C6 H61 sing N N 237 P4C C6 H62 sing N N 238 P4C O7 C8 sing N N 239 P4C C8 C9 sing N N 240 P4C C8 H81 sing N N 241 P4C C8 H82 sing N N 242 P4C C9 O10 sing N N 243 P4C C9 H91 sing N N 244 P4C C9 H92 sing N N 245 P4C O10 C11 sing N N 246 P4C C11 C12 sing N N 247 P4C C11 H111 sing N N 248 P4C C11 H112 sing N N 249 P4C C12 O13 sing N N 250 P4C C12 H121 sing N N 251 P4C C12 H122 sing N N 252 P4C O13 C14 sing N N 253 P4C C14 C15 sing N N 254 P4C C14 H141 sing N N 255 P4C C14 H142 sing N N 256 P4C C15 O16 sing N N 257 P4C C15 H151 sing N N 258 P4C C15 H152 sing N N 259 P4C O16 C17 sing N N 260 P4C C17 C18 sing N N 261 P4C C17 H171 sing N N 262 P4C C17 H172 sing N N 263 P4C C18 O19 sing N N 264 P4C C18 H181 sing N N 265 P4C C18 H182 sing N N 266 P4C O19 C20 sing N N 267 P4C C20 C21 sing N N 268 P4C C20 H201 sing N N 269 P4C C20 H202 sing N N 270 P4C C21 O22 doub N N 271 P4C C21 H21 sing N N 272 PHE N CA sing N N 273 PHE N H sing N N 274 PHE N H2 sing N N 275 PHE CA C sing N N 276 PHE CA CB sing N N 277 PHE CA HA sing N N 278 PHE C O doub N N 279 PHE C OXT sing N N 280 PHE CB CG sing N N 281 PHE CB HB2 sing N N 282 PHE CB HB3 sing N N 283 PHE CG CD1 doub Y N 284 PHE CG CD2 sing Y N 285 PHE CD1 CE1 sing Y N 286 PHE CD1 HD1 sing N N 287 PHE CD2 CE2 doub Y N 288 PHE CD2 HD2 sing N N 289 PHE CE1 CZ doub Y N 290 PHE CE1 HE1 sing N N 291 PHE CE2 CZ sing Y N 292 PHE CE2 HE2 sing N N 293 PHE CZ HZ sing N N 294 PHE OXT HXT sing N N 295 PRO N CA sing N N 296 PRO N CD sing N N 297 PRO N H sing N N 298 PRO CA C sing N N 299 PRO CA CB sing N N 300 PRO CA HA sing N N 301 PRO C O doub N N 302 PRO C OXT sing N N 303 PRO CB CG sing N N 304 PRO CB HB2 sing N N 305 PRO CB HB3 sing N N 306 PRO CG CD sing N N 307 PRO CG HG2 sing N N 308 PRO CG HG3 sing N N 309 PRO CD HD2 sing N N 310 PRO CD HD3 sing N N 311 PRO OXT HXT sing N N 312 SER N CA sing N N 313 SER N H sing N N 314 SER N H2 sing N N 315 SER CA C sing N N 316 SER CA CB sing N N 317 SER CA HA sing N N 318 SER C O doub N N 319 SER C OXT sing N N 320 SER CB OG sing N N 321 SER CB HB2 sing N N 322 SER CB HB3 sing N N 323 SER OG HG sing N N 324 SER OXT HXT sing N N 325 TRP N CA sing N N 326 TRP N H sing N N 327 TRP N H2 sing N N 328 TRP CA C sing N N 329 TRP CA CB sing N N 330 TRP CA HA sing N N 331 TRP C O doub N N 332 TRP C OXT sing N N 333 TRP CB CG sing N N 334 TRP CB HB2 sing N N 335 TRP CB HB3 sing N N 336 TRP CG CD1 doub Y N 337 TRP CG CD2 sing Y N 338 TRP CD1 NE1 sing Y N 339 TRP CD1 HD1 sing N N 340 TRP CD2 CE2 doub Y N 341 TRP CD2 CE3 sing Y N 342 TRP NE1 CE2 sing Y N 343 TRP NE1 HE1 sing N N 344 TRP CE2 CZ2 sing Y N 345 TRP CE3 CZ3 doub Y N 346 TRP CE3 HE3 sing N N 347 TRP CZ2 CH2 doub Y N 348 TRP CZ2 HZ2 sing N N 349 TRP CZ3 CH2 sing Y N 350 TRP CZ3 HZ3 sing N N 351 TRP CH2 HH2 sing N N 352 TRP OXT HXT sing N N 353 TYR N CA sing N N 354 TYR N H sing N N 355 TYR N H2 sing N N 356 TYR CA C sing N N 357 TYR CA CB sing N N 358 TYR CA HA sing N N 359 TYR C O doub N N 360 TYR C OXT sing N N 361 TYR CB CG sing N N 362 TYR CB HB2 sing N N 363 TYR CB HB3 sing N N 364 TYR CG CD1 doub Y N 365 TYR CG CD2 sing Y N 366 TYR CD1 CE1 sing Y N 367 TYR CD1 HD1 sing N N 368 TYR CD2 CE2 doub Y N 369 TYR CD2 HD2 sing N N 370 TYR CE1 CZ doub Y N 371 TYR CE1 HE1 sing N N 372 TYR CE2 CZ sing Y N 373 TYR CE2 HE2 sing N N 374 TYR CZ OH sing N N 375 TYR OH HH sing N N 376 TYR OXT HXT sing N N 377 VAL N CA sing N N 378 VAL N H sing N N 379 VAL N H2 sing N N 380 VAL CA C sing N N 381 VAL CA CB sing N N 382 VAL CA HA sing N N 383 VAL C O doub N N 384 VAL C OXT sing N N 385 VAL CB CG1 sing N N 386 VAL CB CG2 sing N N 387 VAL CB HB sing N N 388 VAL CG1 HG11 sing N N 389 VAL CG1 HG12 sing N N 390 VAL CG1 HG13 sing N N 391 VAL CG2 HG21 sing N N 392 VAL CG2 HG22 sing N N 393 VAL CG2 HG23 sing N N 394 VAL OXT HXT sing N N 395 # _atom_sites.entry_id 4IP9 _atom_sites.fract_transf_matrix[1][1] 0.010655 _atom_sites.fract_transf_matrix[1][2] 0.006152 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012304 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007662 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_