HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-JAN-13 4IPB TITLE CRYSTAL STRUCTURE OF A DUF2874 FAMILY PROTEIN (BACOVA_02504) FROM TITLE 2 BACTEROIDES OVATUS ATCC 8483 AT 1.62 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF11396 FAMILY PROTEIN, DUF2874, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4IPB 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4IPB 1 JRNL REVDAT 3 15-NOV-17 4IPB 1 REMARK REVDAT 2 24-DEC-14 4IPB 1 TITLE REVDAT 1 20-FEB-13 4IPB 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BACOVA_02504) JRNL TITL 2 FROM BACTEROIDES OVATUS ATCC 8483 AT 1.62 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1708 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2240 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2243 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : 1.55000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2358 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2193 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3228 ; 1.649 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5037 ; 1.161 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 5.667 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;38.562 ;25.093 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 332 ;12.127 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 9.455 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2709 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 573 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1140 ; 1.940 ; 1.459 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1139 ; 1.928 ; 1.453 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1425 ; 2.884 ; 2.703 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5960 2.7640 29.7560 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.0420 REMARK 3 T33: 0.1082 T12: 0.0283 REMARK 3 T13: -0.0061 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.4400 L22: 0.3524 REMARK 3 L33: 2.1901 L12: 0.2185 REMARK 3 L13: 0.6338 L23: 0.1730 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: -0.0779 S13: -0.1058 REMARK 3 S21: -0.0080 S22: 0.0433 S23: -0.0647 REMARK 3 S31: 0.1526 S32: 0.1166 S33: -0.0684 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 161 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0790 11.6350 0.0390 REMARK 3 T TENSOR REMARK 3 T11: 0.1469 T22: 0.0526 REMARK 3 T33: 0.0888 T12: -0.0120 REMARK 3 T13: -0.0303 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.7472 L22: 0.6620 REMARK 3 L33: 2.8373 L12: -0.3377 REMARK 3 L13: -1.2513 L23: 0.1447 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.0083 S13: 0.0291 REMARK 3 S21: 0.0539 S22: 0.0171 S23: -0.0855 REMARK 3 S31: -0.0361 S32: 0.1706 S33: -0.0252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. A PEG FRAGMENT (PEG) AND A GLYCEROL (GOL) REMARK 3 MOLECULE FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE REMARK 3 MODELED. REMARK 4 REMARK 4 4IPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918401, 0.979415, 0.979261 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 29.044 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.76800 REMARK 200 R SYM FOR SHELL (I) : 0.76800 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.0% POLYETHYLENE GLYCOL 20000, 0.1M REMARK 280 MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.07750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 162 REMARK 465 ASN B 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 151 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR B 23 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 78 O HOH A 486 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 80 -53.62 77.22 REMARK 500 VAL B 80 -53.26 73.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417005 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 22-162 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4IPB A 22 162 UNP A7LXE2 A7LXE2_BACOV 22 162 DBREF 4IPB B 22 162 UNP A7LXE2 A7LXE2_BACOV 22 162 SEQADV 4IPB GLY A 0 UNP A7LXE2 EXPRESSION TAG SEQADV 4IPB GLY B 0 UNP A7LXE2 EXPRESSION TAG SEQRES 1 A 142 GLY ASP THR PRO PRO GLY ASN VAL GLN SER THR PHE LYS SEQRES 2 A 142 LYS MSE TYR PRO LYS ALA ASN GLY VAL ALA TRP SER GLN SEQRES 3 A 142 ASP ASP GLY TYR TYR CYS ALA ASN PHE ALA MSE ASN GLY SEQRES 4 A 142 PHE THR LYS ASN VAL TRP PHE ASN VAL ARG GLY GLN TRP SEQRES 5 A 142 VAL MSE THR LEU THR ASP LEU VAL SER LEU ASP ARG LEU SEQRES 6 A 142 THR PRO THR VAL TYR ASN ALA PHE VAL SER GLY PRO TYR SEQRES 7 A 142 ALA ASN TRP VAL VAL ASP ASN VAL THR MSE VAL GLU PHE SEQRES 8 A 142 PRO LYS TRP GLN ALA ILE ILE VAL ILE LYS VAL GLY GLN SEQRES 9 A 142 ASP ASN VAL ASP ILE LYS TYR GLN LEU PHE TYR THR PRO SEQRES 10 A 142 GLN GLY ILE LEU LEU LYS THR ARG ASN VAL SER ASP MSE SEQRES 11 A 142 TYR ASP ILE LEU GLY PRO SER THR PHE LEU ALA ASN SEQRES 1 B 142 GLY ASP THR PRO PRO GLY ASN VAL GLN SER THR PHE LYS SEQRES 2 B 142 LYS MSE TYR PRO LYS ALA ASN GLY VAL ALA TRP SER GLN SEQRES 3 B 142 ASP ASP GLY TYR TYR CYS ALA ASN PHE ALA MSE ASN GLY SEQRES 4 B 142 PHE THR LYS ASN VAL TRP PHE ASN VAL ARG GLY GLN TRP SEQRES 5 B 142 VAL MSE THR LEU THR ASP LEU VAL SER LEU ASP ARG LEU SEQRES 6 B 142 THR PRO THR VAL TYR ASN ALA PHE VAL SER GLY PRO TYR SEQRES 7 B 142 ALA ASN TRP VAL VAL ASP ASN VAL THR MSE VAL GLU PHE SEQRES 8 B 142 PRO LYS TRP GLN ALA ILE ILE VAL ILE LYS VAL GLY GLN SEQRES 9 B 142 ASP ASN VAL ASP ILE LYS TYR GLN LEU PHE TYR THR PRO SEQRES 10 B 142 GLN GLY ILE LEU LEU LYS THR ARG ASN VAL SER ASP MSE SEQRES 11 B 142 TYR ASP ILE LEU GLY PRO SER THR PHE LEU ALA ASN MODRES 4IPB MSE A 35 MET SELENOMETHIONINE MODRES 4IPB MSE A 57 MET SELENOMETHIONINE MODRES 4IPB MSE A 74 MET SELENOMETHIONINE MODRES 4IPB MSE A 108 MET SELENOMETHIONINE MODRES 4IPB MSE A 150 MET SELENOMETHIONINE MODRES 4IPB MSE B 35 MET SELENOMETHIONINE MODRES 4IPB MSE B 57 MET SELENOMETHIONINE MODRES 4IPB MSE B 74 MET SELENOMETHIONINE MODRES 4IPB MSE B 108 MET SELENOMETHIONINE MODRES 4IPB MSE B 150 MET SELENOMETHIONINE HET MSE A 35 8 HET MSE A 57 8 HET MSE A 74 8 HET MSE A 108 8 HET MSE A 150 8 HET MSE B 35 8 HET MSE B 57 8 HET MSE B 74 8 HET MSE B 108 13 HET MSE B 150 8 HET PEG A 200 7 HET GOL A 201 6 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 PEG C4 H10 O3 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *345(H2 O) HELIX 1 1 PRO A 25 TYR A 36 1 12 HELIX 2 2 SER A 81 LEU A 85 5 5 HELIX 3 3 THR A 86 GLY A 96 1 11 HELIX 4 4 GLY A 155 LEU A 160 1 6 HELIX 5 5 PRO B 25 TYR B 36 1 12 HELIX 6 6 SER B 81 LEU B 85 5 5 HELIX 7 7 THR B 86 GLY B 96 1 11 HELIX 8 8 GLY B 155 LEU B 160 1 6 SHEET 1 A 8 ALA A 43 ASP A 47 0 SHEET 2 A 8 TYR A 50 MSE A 57 -1 O CYS A 52 N SER A 45 SHEET 3 A 8 PHE A 60 PHE A 66 -1 O LYS A 62 N PHE A 55 SHEET 4 A 8 TRP A 72 ASP A 78 -1 O MSE A 74 N TRP A 65 SHEET 5 A 8 VAL A 102 GLU A 110 -1 O GLU A 110 N THR A 75 SHEET 6 A 8 ILE A 117 GLN A 124 -1 O VAL A 119 N THR A 107 SHEET 7 A 8 VAL A 127 TYR A 135 -1 O TYR A 135 N ILE A 118 SHEET 8 A 8 LEU A 141 ASN A 146 -1 O LEU A 142 N PHE A 134 SHEET 1 B 8 ALA B 43 ASP B 47 0 SHEET 2 B 8 TYR B 50 MSE B 57 -1 O ASN B 54 N ALA B 43 SHEET 3 B 8 PHE B 60 PHE B 66 -1 O LYS B 62 N PHE B 55 SHEET 4 B 8 TRP B 72 ASP B 78 -1 O MSE B 74 N TRP B 65 SHEET 5 B 8 VAL B 102 GLU B 110 -1 O GLU B 110 N THR B 75 SHEET 6 B 8 ILE B 117 GLN B 124 -1 O VAL B 119 N THR B 107 SHEET 7 B 8 VAL B 127 TYR B 135 -1 O TYR B 135 N ILE B 118 SHEET 8 B 8 LEU B 141 ASN B 146 -1 O LEU B 142 N PHE B 134 LINK C LYS A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N TYR A 36 1555 1555 1.35 LINK C ALA A 56 N MSE A 57 1555 1555 1.32 LINK C MSE A 57 N ASN A 58 1555 1555 1.34 LINK C VAL A 73 N MSE A 74 1555 1555 1.32 LINK C MSE A 74 N THR A 75 1555 1555 1.35 LINK C THR A 107 N MSE A 108 1555 1555 1.32 LINK C MSE A 108 N VAL A 109 1555 1555 1.30 LINK C ASP A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N TYR A 151 1555 1555 1.33 LINK C LYS B 34 N MSE B 35 1555 1555 1.36 LINK C MSE B 35 N TYR B 36 1555 1555 1.34 LINK C ALA B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N ASN B 58 1555 1555 1.33 LINK C VAL B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N THR B 75 1555 1555 1.33 LINK C THR B 107 N MSE B 108 1555 1555 1.33 LINK C MSE B 108 N VAL B 109 1555 1555 1.34 LINK C ASP B 149 N MSE B 150 1555 1555 1.33 LINK C MSE B 150 N TYR B 151 1555 1555 1.32 SITE 1 AC1 10 LYS A 143 THR A 144 ARG A 145 HOH A 385 SITE 2 AC1 10 HOH A 480 LYS B 143 THR B 144 HOH B 295 SITE 3 AC1 10 HOH B 328 HOH B 332 SITE 1 AC2 8 MSE A 35 TYR A 36 THR A 75 GLU A 110 SITE 2 AC2 8 HOH A 366 HOH A 380 LYS B 38 HOH B 210 CRYST1 41.265 54.155 60.120 90.00 91.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024234 0.000000 0.000601 0.00000 SCALE2 0.000000 0.018466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016638 0.00000