HEADER HYDROLASE 10-JAN-13 4IPM TITLE CRYSTAL STRUCTURE OF A GH7 FAMILY CELLOBIOHYDROLASE FROM LIMNORIA TITLE 2 QUADRIPUNCTATA IN COMPLEX WITH THIOCELLOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH7 FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-448; COMPND 5 EC: 3.2.1.91; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIMNORIA QUADRIPUNCTATA; SOURCE 3 ORGANISM_TAXID: 161573; SOURCE 4 GENE: GH7B; SOURCE 5 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS THIOCELLOBIOSE, CELLOBIOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.MCGEEHAN,R.N.A.MARTIN,S.D.STREETER,S.M.CRAGG,M.J.GUILLE, AUTHOR 2 K.M.SCHNORR,M.KERN,N.C.BRUCE,S.J.MCQUEEN-MASON REVDAT 6 16-OCT-24 4IPM 1 REMARK REVDAT 5 08-NOV-23 4IPM 1 HETSYN REVDAT 4 29-JUL-20 4IPM 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 25-DEC-19 4IPM 1 SEQADV SEQRES LINK REVDAT 2 03-SEP-14 4IPM 1 JRNL REVDAT 1 12-JUN-13 4IPM 0 JRNL AUTH M.KERN,J.E.MCGEEHAN,S.D.STREETER,R.N.MARTIN,K.BESSER, JRNL AUTH 2 L.ELIAS,W.EBORALL,G.P.MALYON,C.M.PAYNE,M.E.HIMMEL,K.SCHNORR, JRNL AUTH 3 G.T.BECKHAM,S.M.CRAGG,N.C.BRUCE,S.J.MCQUEEN-MASON JRNL TITL STRUCTURAL CHARACTERIZATION OF A UNIQUE MARINE ANIMAL FAMILY JRNL TITL 2 7 CELLOBIOHYDROLASE SUGGESTS A MECHANISM OF CELLULASE SALT JRNL TITL 3 TOLERANCE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 10189 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23733951 JRNL DOI 10.1073/PNAS.1301502110 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.KING,S.M.CRAGG,Y.LI,J.DYMOND,M.J.GUILLE,D.J.BOWLES, REMARK 1 AUTH 2 N.C.BRUCE,I.A.GRAHAM,S.J.MCQUEEN-MASON REMARK 1 TITL MOLECULAR INSIGHT INTO LIGNOCELLULOSE DIGESTION BY A MARINE REMARK 1 TITL 2 ISOPOD IN THE ABSENCE OF GUT MICROBES. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 107 5345 2010 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 20212162 REMARK 1 DOI 10.1073/PNAS.0914228107 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 140221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.123 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7047 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7484 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 408 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 687 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.996 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3425 ; 0.022 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2900 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4685 ; 2.025 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6727 ; 0.958 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 6.595 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;32.308 ;25.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;12.036 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;22.078 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4069 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 774 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6324 ; 6.196 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 132 ;59.449 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6788 ;16.264 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4IPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140362 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 63.559 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: 4GWA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE PH 4.5, 500MM REMARK 280 CACL2, 15% (W/V) PEG 6000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.89000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.58000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.89000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO4 BGC B 2 O HOH A 1203 1.26 REMARK 500 HH12 ARG A 417 H61 SGC B 1 1.34 REMARK 500 O HOH A 1181 O HOH A 1211 1.54 REMARK 500 HD21 ASN A 162 OE2 GLU A 238 1.54 REMARK 500 HD22 ASN A 71 O HOH A 1139 1.59 REMARK 500 OD1 ASN A 66 O HOH A 1286 1.68 REMARK 500 O HOH A 782 O HOH A 1287 1.76 REMARK 500 O HOH A 718 O HOH A 1272 1.80 REMARK 500 O HOH A 1029 O HOH A 1138 1.95 REMARK 500 O HOH A 852 O HOH A 1170 2.00 REMARK 500 OE1 GLU A 238 OXT ACT A 503 2.02 REMARK 500 O HOH A 699 O HOH A 1262 2.03 REMARK 500 O HOH A 767 O HOH A 1082 2.03 REMARK 500 O HOH A 1002 O HOH A 1286 2.05 REMARK 500 O HOH A 939 O HOH A 1199 2.05 REMARK 500 O HOH A 843 O HOH A 1254 2.07 REMARK 500 O HOH A 962 O HOH A 1059 2.07 REMARK 500 O4 BGC B 2 O HOH A 1203 2.08 REMARK 500 O HOH A 1210 O HOH A 1212 2.13 REMARK 500 O HOH A 990 O HOH A 1134 2.13 REMARK 500 O HOH A 1199 O HOH A 1213 2.14 REMARK 500 O HOH A 840 O HOH A 951 2.15 REMARK 500 O HOH A 1180 O HOH A 1195 2.15 REMARK 500 O HOH A 835 O HOH A 1099 2.16 REMARK 500 O GLY A 363 O HOH A 921 2.16 REMARK 500 OD1 ASP A 429 O HOH A 1285 2.18 REMARK 500 O HOH A 844 O HOH A 974 2.19 REMARK 500 O HOH A 932 O HOH A 1240 2.19 REMARK 500 O HOH A 979 O HOH A 992 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG1 THR A 27 HE22 GLN A 334 4455 1.34 REMARK 500 O HOH A 684 O HOH A 901 4454 2.02 REMARK 500 O HOH A 684 O HOH A 973 4454 2.10 REMARK 500 O HOH A 1226 O HOH A 1254 2565 2.13 REMARK 500 O HOH A 1231 O HOH A 1253 4555 2.17 REMARK 500 O HOH A 1223 O HOH A 1263 2555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 28 CD GLU A 28 OE2 -0.087 REMARK 500 GLU A 62 CB GLU A 62 CG -0.145 REMARK 500 GLU A 120 CD GLU A 120 OE2 0.076 REMARK 500 ARG A 323 CZ ARG A 323 NH2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 94 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 LYS A 110 CD - CE - NZ ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 136 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 136 CB - CG - OD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG A 287 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 426 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 -155.67 -120.10 REMARK 500 PHE A 115 -88.14 -94.19 REMARK 500 ASN A 209 49.39 -91.20 REMARK 500 ALA A 404 -128.00 -131.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 712 O REMARK 620 2 HOH A 764 O 139.1 REMARK 620 3 HOH A1187 O 149.4 68.8 REMARK 620 4 HOH A1283 O 68.5 73.6 141.8 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GWA RELATED DB: PDB REMARK 900 FREE PROTEIN CRYSTAL STRUCTURE REMARK 900 RELATED ID: 4HAP RELATED DB: PDB REMARK 900 PROTEIN BOUND TO CELLOBIOSE REMARK 900 RELATED ID: 4HAQ RELATED DB: PDB REMARK 900 PROTEIN BOUND TO CELLOBIOSE AND CELLOTRIOSE DBREF 4IPM A 24 453 UNP D4HRL0 D4HRL0_9CRUS 19 448 SEQADV 4IPM PCA A 23 UNP D4HRL0 EXPRESSION TAG SEQRES 1 A 431 PCA GLN ALA GLY THR GLU THR GLU GLU TYR HIS LEU PRO SEQRES 2 A 431 LEU THR TRP GLU ARG ASP GLY SER SER VAL SER ALA SER SEQRES 3 A 431 VAL VAL ILE ASP SER ASN TRP ARG TRP THR HIS SER THR SEQRES 4 A 431 GLU ASP THR THR ASN CYS TYR ASP GLY ASN GLU TRP ASP SEQRES 5 A 431 SER THR LEU CYS PRO ASP ALA ASP THR CYS THR GLU ASN SEQRES 6 A 431 CYS ALA ILE ASP GLY VAL ASP GLN GLY THR TRP GLY ASP SEQRES 7 A 431 THR TYR GLY ILE THR ALA SER GLY SER LYS LEU THR LEU SEQRES 8 A 431 SER PHE VAL THR GLU GLY GLU TYR SER THR ASP ILE GLY SEQRES 9 A 431 SER ARG VAL PHE LEU MET ALA ASP ASP ASP ASN TYR GLU SEQRES 10 A 431 ILE PHE ASN LEU LEU ASP LYS GLU PHE SER PHE ASP VAL SEQRES 11 A 431 ASP ALA SER ASN LEU PRO CYS GLY LEU ASN GLY ALA LEU SEQRES 12 A 431 TYR PHE VAL SER MET ASP GLU ASP GLY GLY THR SER LYS SEQRES 13 A 431 TYR SER THR ASN THR ALA GLY ALA LYS TYR GLY THR GLY SEQRES 14 A 431 TYR CYS ASP ALA GLN CYS PRO HIS ASP MET LYS PHE ILE SEQRES 15 A 431 ALA GLY LYS ALA ASN SER ASP GLY TRP THR PRO SER ASP SEQRES 16 A 431 ASN ASP GLN ASN ALA GLY THR GLY GLU MET GLY ALA CYS SEQRES 17 A 431 CYS HIS GLU MET ASP ILE TRP GLU ALA ASN SER GLN ALA SEQRES 18 A 431 GLN SER TYR THR ALA HIS VAL CYS SER VAL ASP GLY TYR SEQRES 19 A 431 THR PRO CYS THR GLY THR ASP CYS GLY ASP ASN GLY ASP SEQRES 20 A 431 ASP ARG TYR LYS GLY VAL CYS ASP LYS ASP GLY CYS ASP SEQRES 21 A 431 TYR ALA ALA TYR ARG LEU GLY GLN HIS ASP PHE TYR GLY SEQRES 22 A 431 GLU GLY GLY THR VAL ASP SER GLY SER THR LEU THR VAL SEQRES 23 A 431 ILE THR GLN PHE ILE THR GLY GLY GLY GLY LEU ASN GLU SEQRES 24 A 431 ILE ARG ARG ILE TYR GLN GLN GLY GLY GLN THR ILE GLN SEQRES 25 A 431 ASN ALA ALA VAL ASN PHE PRO GLY ASP VAL ASP PRO TYR SEQRES 26 A 431 ASP SER ILE THR GLU ASP PHE CYS VAL ASP ILE LYS ARG SEQRES 27 A 431 TYR PHE GLY ASP THR ASN ASP PHE ASP ALA LYS GLY GLY SEQRES 28 A 431 MET SER GLY MET SER ASN ALA LEU LYS LYS GLY MET VAL SEQRES 29 A 431 LEU VAL MET SER LEU TRP ASP ASP HIS TYR ALA ASN MET SEQRES 30 A 431 LEU TRP LEU ASP ALA THR TYR PRO VAL ASP SER THR GLU SEQRES 31 A 431 PRO GLY ALA LEU ARG GLY PRO CYS SER THR ASP SER GLY SEQRES 32 A 431 ASP PRO ALA ASP VAL GLU ALA ASN PHE PRO GLY SER THR SEQRES 33 A 431 VAL THR PHE SER ASN ILE LYS ILE GLY PRO ILE GLN SER SEQRES 34 A 431 TYR ASP MODRES 4IPM PCA A 23 GLN PYROGLUTAMIC ACID HET PCA A 23 13 HET SGC B 1 23 HET BGC B 2 22 HET CA A 502 1 HET ACT A 503 7 HETNAM PCA PYROGLUTAMIC ACID HETNAM SGC 4-THIO-BETA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETSYN SGC 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE; 4-THIO-BETA-D- HETSYN 2 SGC GLUCOSE; 4-THIO-D-GLUCOSE; 4-THIO-GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 1 PCA C5 H7 N O3 FORMUL 2 SGC C6 H12 O5 S FORMUL 2 BGC C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *687(H2 O) HELIX 1 1 SER A 53 ARG A 56 5 4 HELIX 2 2 ASP A 80 ASN A 87 1 8 HELIX 3 3 ASP A 94 THR A 101 1 8 HELIX 4 4 GLY A 185 GLY A 189 5 5 HELIX 5 5 THR A 260 GLY A 265 5 6 HELIX 6 6 THR A 351 GLY A 363 1 13 HELIX 7 7 ASN A 366 LYS A 371 1 6 HELIX 8 8 GLY A 372 GLY A 384 1 13 HELIX 9 9 MET A 399 ALA A 404 1 6 HELIX 10 10 ASP A 426 PHE A 434 1 9 SHEET 1 A 3 GLN A 24 ALA A 25 0 SHEET 2 A 3 CYS A 88 ILE A 90 1 O ILE A 90 N GLN A 24 SHEET 3 A 3 THR A 58 SER A 60 -1 N HIS A 59 O ALA A 89 SHEET 1 B11 THR A 105 SER A 107 0 SHEET 2 B11 LYS A 110 SER A 114 -1 O THR A 112 N THR A 105 SHEET 3 B11 THR A 438 PRO A 448 -1 O PHE A 441 N LEU A 111 SHEET 4 B11 LEU A 34 ARG A 40 1 N GLU A 39 O ILE A 444 SHEET 5 B11 SER A 43 ILE A 51 -1 O VAL A 45 N TRP A 38 SHEET 6 B11 SER A 127 ASP A 134 -1 O MET A 132 N SER A 48 SHEET 7 B11 VAL A 386 TRP A 392 -1 O MET A 389 N VAL A 129 SHEET 8 B11 ASN A 162 VAL A 168 -1 N TYR A 166 O VAL A 388 SHEET 9 B11 GLU A 233 ALA A 239 -1 O MET A 234 N PHE A 167 SHEET 10 B11 GLN A 244 HIS A 249 -1 O THR A 247 N ASP A 235 SHEET 11 B11 CYS A 281 TYR A 283 -1 O TYR A 283 N TYR A 246 SHEET 1 C 9 ASN A 137 TYR A 138 0 SHEET 2 C 9 SER A 127 ASP A 134 -1 N ALA A 133 O ASN A 137 SHEET 3 C 9 SER A 43 ILE A 51 -1 N SER A 48 O MET A 132 SHEET 4 C 9 LEU A 34 ARG A 40 -1 N TRP A 38 O VAL A 45 SHEET 5 C 9 THR A 438 PRO A 448 1 O ILE A 444 N GLU A 39 SHEET 6 C 9 LYS A 146 ASP A 153 -1 N GLU A 147 O GLY A 447 SHEET 7 C 9 LEU A 306 GLY A 315 -1 O VAL A 308 N PHE A 150 SHEET 8 C 9 GLY A 318 GLN A 328 -1 O GLN A 327 N THR A 307 SHEET 9 C 9 GLN A 331 GLN A 334 -1 O ILE A 333 N TYR A 326 SHEET 1 D 2 TYR A 68 ASP A 69 0 SHEET 2 D 2 GLU A 72 TRP A 73 -1 O GLU A 72 N ASP A 69 SHEET 1 E 2 VAL A 116 GLU A 118 0 SHEET 2 E 2 THR A 123 ILE A 125 -1 O ASP A 124 N THR A 117 SHEET 1 F 2 PHE A 203 ILE A 204 0 SHEET 2 F 2 LYS A 207 ALA A 208 -1 O LYS A 207 N ILE A 204 SHEET 1 G 2 THR A 214 PRO A 215 0 SHEET 2 G 2 GLY A 223 THR A 224 -1 O THR A 224 N THR A 214 SHEET 1 H 2 GLY A 228 CYS A 230 0 SHEET 2 H 2 THR A 257 CYS A 259 -1 O THR A 257 N CYS A 230 SHEET 1 I 2 TYR A 294 GLY A 295 0 SHEET 2 I 2 VAL A 300 ASP A 301 1 O VAL A 300 N GLY A 295 SSBOND 1 CYS A 67 CYS A 88 1555 1555 2.05 SSBOND 2 CYS A 78 CYS A 84 1555 1555 2.08 SSBOND 3 CYS A 159 CYS A 420 1555 1555 2.10 SSBOND 4 CYS A 193 CYS A 231 1555 1555 2.06 SSBOND 5 CYS A 197 CYS A 230 1555 1555 2.06 SSBOND 6 CYS A 251 CYS A 276 1555 1555 2.05 SSBOND 7 CYS A 259 CYS A 264 1555 1555 2.05 SSBOND 8 CYS A 281 CYS A 355 1555 1555 2.03 LINK C PCA A 23 N GLN A 24 1555 1555 1.34 LINK S4 SGC B 1 C1 BGC B 2 1555 1555 1.76 LINK CA CA A 502 O HOH A 712 1555 1555 2.36 LINK CA CA A 502 O HOH A 764 1555 1555 2.43 LINK CA CA A 502 O HOH A1187 1555 1555 2.39 LINK CA CA A 502 O HOH A1283 1555 1555 2.62 CISPEP 1 TYR A 406 PRO A 407 0 -6.79 CRYST1 47.490 79.780 105.160 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021057 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009509 0.00000 HETATM 1 N PCA A 23 -13.434 17.219 5.966 1.00 6.92 N ANISOU 1 N PCA A 23 800 1024 803 -160 139 -161 N HETATM 2 CA PCA A 23 -13.481 18.608 6.482 1.00 6.35 C ANISOU 2 CA PCA A 23 595 1055 762 -55 -38 -10 C HETATM 3 CB PCA A 23 -13.507 19.468 5.216 1.00 6.58 C ANISOU 3 CB PCA A 23 853 965 680 -49 182 60 C HETATM 4 CG PCA A 23 -14.005 18.519 4.109 1.00 6.63 C ANISOU 4 CG PCA A 23 635 1174 708 91 91 0 C HETATM 5 CD PCA A 23 -13.725 17.143 4.657 1.00 7.11 C ANISOU 5 CD PCA A 23 538 1218 944 -29 -72 -172 C HETATM 6 OE PCA A 23 -13.803 16.121 4.003 1.00 9.13 O ANISOU 6 OE PCA A 23 1146 1380 941 -187 142 -514 O HETATM 7 C PCA A 23 -14.755 18.915 7.262 1.00 6.58 C ANISOU 7 C PCA A 23 818 1025 654 -106 174 27 C HETATM 8 O PCA A 23 -15.871 18.459 6.924 1.00 7.00 O ANISOU 8 O PCA A 23 703 1026 929 -175 200 -126 O HETATM 9 HA PCA A 23 -12.581 18.823 7.068 1.00 6.25 H ANISOU 9 HA PCA A 23 686 1013 674 -111 -35 -45 H HETATM 10 HB2 PCA A 23 -12.514 19.850 4.980 1.00 6.68 H ANISOU 10 HB2 PCA A 23 786 1034 717 -34 96 10 H HETATM 11 HB3 PCA A 23 -14.190 20.313 5.328 1.00 6.59 H ANISOU 11 HB3 PCA A 23 797 995 710 -43 101 30 H HETATM 12 HG2 PCA A 23 -13.458 18.686 3.178 1.00 6.54 H ANISOU 12 HG2 PCA A 23 653 1106 725 26 93 -8 H HETATM 13 HG3 PCA A 23 -15.073 18.658 3.933 1.00 6.61 H ANISOU 13 HG3 PCA A 23 673 1096 741 71 4 -11 H