HEADER LYASE, ISOMERASE 10-JAN-13 4IPT TITLE THE CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASES/REDUCTASE TITLE 2 (ETHYLATED) FROM VEILLONELLA PARVULA DSM 2008 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT EPIMERASE/DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SHORT-CHAIN DEHYDROGENASES/REDUCTASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VEILLONELLA PARVULA; SOURCE 3 ORGANISM_TAXID: 479436; SOURCE 4 STRAIN: DSM 2008; SOURCE 5 GENE: VPAR_0111; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, LYASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,C.HATZOS-SKINTGES,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 2 27-NOV-19 4IPT 1 SEQADV HETSYN LINK REVDAT 1 06-FEB-13 4IPT 0 SPRSDE 06-FEB-13 4IPT 3R14 JRNL AUTH K.TAN,C.HATZOS-SKINTGES,S.CLANCY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A SHORT-CHAIN JRNL TITL 2 DEHYDROGENASES/REDUCTASE (ETHYLATED) FROM VEILLONELLA JRNL TITL 3 PARVULA DSM 2008 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 31850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3294 - 3.5397 0.88 2411 122 0.1830 0.2154 REMARK 3 2 3.5397 - 2.8098 0.98 2551 143 0.1848 0.2014 REMARK 3 3 2.8098 - 2.4546 1.00 2553 140 0.1817 0.2260 REMARK 3 4 2.4546 - 2.2302 1.00 2576 119 0.1795 0.1931 REMARK 3 5 2.2302 - 2.0704 1.00 2537 141 0.1790 0.2390 REMARK 3 6 2.0704 - 1.9483 1.00 2548 136 0.1828 0.2069 REMARK 3 7 1.9483 - 1.8507 1.00 2515 150 0.1846 0.2288 REMARK 3 8 1.8507 - 1.7702 1.00 2508 149 0.1930 0.2339 REMARK 3 9 1.7702 - 1.7020 1.00 2532 135 0.2014 0.2681 REMARK 3 10 1.7020 - 1.6433 1.00 2530 127 0.2311 0.2654 REMARK 3 11 1.6433 - 1.5919 1.00 2511 124 0.2452 0.3087 REMARK 3 12 1.5919 - 1.5464 0.97 2460 132 0.2577 0.3390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1847 REMARK 3 ANGLE : 1.038 2500 REMARK 3 CHIRALITY : 0.069 277 REMARK 3 PLANARITY : 0.004 318 REMARK 3 DIHEDRAL : 16.198 712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1313 49.4569 22.2256 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.2312 REMARK 3 T33: 0.1827 T12: 0.0179 REMARK 3 T13: -0.0592 T23: -0.0526 REMARK 3 L TENSOR REMARK 3 L11: 5.7621 L22: 2.4619 REMARK 3 L33: 6.5087 L12: 0.4335 REMARK 3 L13: 0.2249 L23: 0.0798 REMARK 3 S TENSOR REMARK 3 S11: 0.1088 S12: -0.1674 S13: -0.2756 REMARK 3 S21: 0.2233 S22: 0.0582 S23: -0.0958 REMARK 3 S31: 0.3567 S32: 0.4045 S33: -0.1215 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9052 55.7019 23.3223 REMARK 3 T TENSOR REMARK 3 T11: 0.4191 T22: 0.4124 REMARK 3 T33: 0.2666 T12: -0.0337 REMARK 3 T13: -0.0380 T23: -0.1064 REMARK 3 L TENSOR REMARK 3 L11: 3.9372 L22: 2.7037 REMARK 3 L33: 5.8530 L12: 1.3701 REMARK 3 L13: -0.4217 L23: 1.2287 REMARK 3 S TENSOR REMARK 3 S11: 0.5098 S12: -0.2739 S13: 0.0059 REMARK 3 S21: 0.6531 S22: -0.1193 S23: -0.1803 REMARK 3 S31: -0.5616 S32: 1.0882 S33: -0.4080 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5140 53.3098 17.6649 REMARK 3 T TENSOR REMARK 3 T11: 0.2960 T22: 0.5289 REMARK 3 T33: 0.3480 T12: 0.0107 REMARK 3 T13: -0.0869 T23: -0.1757 REMARK 3 L TENSOR REMARK 3 L11: 4.8116 L22: 4.6331 REMARK 3 L33: 4.6618 L12: 0.3413 REMARK 3 L13: -0.3350 L23: -0.4790 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.1537 S13: 0.0736 REMARK 3 S21: 0.3988 S22: 0.2840 S23: -0.5400 REMARK 3 S31: -0.4277 S32: 1.4193 S33: -0.2312 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8570 49.4978 11.7631 REMARK 3 T TENSOR REMARK 3 T11: 0.2631 T22: 0.3578 REMARK 3 T33: 0.2081 T12: 0.0512 REMARK 3 T13: -0.0141 T23: -0.1357 REMARK 3 L TENSOR REMARK 3 L11: 7.6476 L22: 2.5823 REMARK 3 L33: 2.2749 L12: 0.7486 REMARK 3 L13: -0.3837 L23: 1.2807 REMARK 3 S TENSOR REMARK 3 S11: -0.3306 S12: 0.2067 S13: -0.5981 REMARK 3 S21: 0.2199 S22: 0.7231 S23: -0.0314 REMARK 3 S31: 0.0986 S32: 0.7881 S33: -0.1608 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4317 50.6713 3.3775 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.5792 REMARK 3 T33: 0.3188 T12: -0.1248 REMARK 3 T13: 0.0248 T23: -0.1453 REMARK 3 L TENSOR REMARK 3 L11: 5.3775 L22: 9.8487 REMARK 3 L33: 5.1526 L12: -6.8332 REMARK 3 L13: 1.4073 L23: -2.5528 REMARK 3 S TENSOR REMARK 3 S11: 0.1684 S12: 0.8208 S13: 0.3563 REMARK 3 S21: -0.5499 S22: 0.1121 S23: -0.8819 REMARK 3 S31: -0.1754 S32: 1.0607 S33: -0.1865 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1679 49.4017 6.6508 REMARK 3 T TENSOR REMARK 3 T11: 0.2085 T22: 0.2252 REMARK 3 T33: 0.1775 T12: -0.0223 REMARK 3 T13: -0.0159 T23: -0.0577 REMARK 3 L TENSOR REMARK 3 L11: 6.3029 L22: 4.2543 REMARK 3 L33: 3.2026 L12: -3.2681 REMARK 3 L13: 0.9034 L23: -1.0312 REMARK 3 S TENSOR REMARK 3 S11: -0.1090 S12: 0.4173 S13: -0.2613 REMARK 3 S21: 0.0011 S22: 0.1565 S23: 0.0213 REMARK 3 S31: 0.0633 S32: 0.2041 S33: -0.0189 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6576 64.5074 4.0432 REMARK 3 T TENSOR REMARK 3 T11: 0.3738 T22: 0.3175 REMARK 3 T33: 0.4854 T12: 0.0393 REMARK 3 T13: -0.0881 T23: 0.0986 REMARK 3 L TENSOR REMARK 3 L11: 3.1124 L22: 5.0857 REMARK 3 L33: 4.2530 L12: 2.5051 REMARK 3 L13: 0.3453 L23: 1.0475 REMARK 3 S TENSOR REMARK 3 S11: -0.3303 S12: 0.8011 S13: 1.6613 REMARK 3 S21: -0.7910 S22: 0.2869 S23: 0.5577 REMARK 3 S31: -1.1172 S32: -0.4385 S33: 0.1838 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0330 56.3518 -0.1042 REMARK 3 T TENSOR REMARK 3 T11: 0.3645 T22: 0.3819 REMARK 3 T33: 0.2008 T12: -0.1229 REMARK 3 T13: -0.0251 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 7.0268 L22: 3.9184 REMARK 3 L33: 2.0515 L12: -5.2172 REMARK 3 L13: -0.3623 L23: 0.6091 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: 0.7833 S13: 0.2096 REMARK 3 S21: -0.6865 S22: -0.1531 S23: -0.3261 REMARK 3 S31: -0.5340 S32: 0.4256 S33: 0.0691 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6792 50.3485 9.1108 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.1480 REMARK 3 T33: 0.1338 T12: -0.0239 REMARK 3 T13: -0.0048 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 4.1057 L22: 4.1600 REMARK 3 L33: 4.2324 L12: -0.8632 REMARK 3 L13: -0.3529 L23: 2.0854 REMARK 3 S TENSOR REMARK 3 S11: -0.2313 S12: 0.1682 S13: 0.0158 REMARK 3 S21: 0.1345 S22: 0.2714 S23: -0.0756 REMARK 3 S31: 0.0532 S32: 0.3063 S33: 0.0257 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9508 50.4756 17.8995 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.2403 REMARK 3 T33: 0.1753 T12: -0.0090 REMARK 3 T13: 0.0485 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 4.9926 L22: 3.9181 REMARK 3 L33: 2.4111 L12: -1.0152 REMARK 3 L13: 1.4566 L23: 0.6352 REMARK 3 S TENSOR REMARK 3 S11: -0.1781 S12: -0.3375 S13: -0.0467 REMARK 3 S21: 0.4958 S22: 0.0064 S23: 0.1966 REMARK 3 S31: -0.0156 S32: -0.4436 S33: 0.1397 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2588 40.1301 10.9689 REMARK 3 T TENSOR REMARK 3 T11: 0.3339 T22: 0.1895 REMARK 3 T33: 0.2863 T12: 0.0023 REMARK 3 T13: 0.0017 T23: -0.0514 REMARK 3 L TENSOR REMARK 3 L11: 3.5763 L22: 4.0339 REMARK 3 L33: 4.6969 L12: 0.5427 REMARK 3 L13: -1.1364 L23: 0.3952 REMARK 3 S TENSOR REMARK 3 S11: -0.2412 S12: 0.1361 S13: -0.5745 REMARK 3 S21: 0.2967 S22: 0.2264 S23: -0.4861 REMARK 3 S31: 0.9504 S32: 0.0557 S33: 0.0422 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4803 60.6401 15.8375 REMARK 3 T TENSOR REMARK 3 T11: 0.2853 T22: 0.3235 REMARK 3 T33: 0.3817 T12: 0.0880 REMARK 3 T13: 0.0369 T23: -0.0660 REMARK 3 L TENSOR REMARK 3 L11: 3.0793 L22: 6.3916 REMARK 3 L33: 3.8635 L12: -1.0702 REMARK 3 L13: -2.2768 L23: 0.0699 REMARK 3 S TENSOR REMARK 3 S11: -0.1222 S12: -0.1651 S13: 0.3621 REMARK 3 S21: 0.1234 S22: 0.1985 S23: 0.5402 REMARK 3 S31: -0.5100 S32: -0.6382 S33: -0.0814 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31918 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, HKL-3000, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M CACL2, 0.1M BIS-TRIS:HCL, 30% REMARK 280 (V/V) PEG MME 550, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.84050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.38450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.37900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.38450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.84050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.37900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. IT IS PREDICTED TO BE A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ELY A 38 CT2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 47 6.30 -61.68 REMARK 500 MSE A 79 73.65 -112.64 REMARK 500 ASP A 157 112.84 -164.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC100850 RELATED DB: TARGETTRACK DBREF 4IPT A 1 218 UNP D1BQI7 D1BQI7_VEIPT 1 218 SEQADV 4IPT SER A -2 UNP D1BQI7 EXPRESSION TAG SEQADV 4IPT ASN A -1 UNP D1BQI7 EXPRESSION TAG SEQADV 4IPT ALA A 0 UNP D1BQI7 EXPRESSION TAG SEQRES 1 A 221 SER ASN ALA MSE TYR LYS TYR ILE THR ILE LEU GLY ALA SEQRES 2 A 221 ALA GLY GLN ILE ALA GLN ELY LEU THR ALA THR LEU LEU SEQRES 3 A 221 THR TYR THR ASP MSE HIS ILE THR LEU TYR GLY ARG GLN SEQRES 4 A 221 LEU ELY THR ARG ILE PRO PRO GLU ILE ILE ASP HIS GLU SEQRES 5 A 221 ARG VAL THR VAL ILE GLU GLY SER PHE GLN ASN PRO GLY SEQRES 6 A 221 LYS LEU GLU GLN ALA VAL THR ASN ALA GLU VAL VAL PHE SEQRES 7 A 221 VAL GLY ALA MSE GLU SER GLY SER ASP MSE ALA SER ILE SEQRES 8 A 221 VAL LYS ALA LEU SER ARG LYS ASN ILE ARG ARG VAL ILE SEQRES 9 A 221 GLY VAL SER MSE ALA GLY LEU SER GLY GLU PHE PRO VAL SEQRES 10 A 221 ALA LEU GLU LYS TRP THR PHE ASP ASN LEU PRO ILE SER SEQRES 11 A 221 TYR VAL GLN GLY GLU ARG GLN ALA ARG ASN VAL LEU ARG SEQRES 12 A 221 GLU SER ASN LEU ASN TYR THR ILE LEU ARG LEU THR TRP SEQRES 13 A 221 LEU TYR ASN ASP PRO GLU LYS THR ASP TYR GLU LEU ILE SEQRES 14 A 221 PRO GLU GLY ALA GLN PHE ASN ASP ALA GLN VAL SER ARG SEQRES 15 A 221 GLU ALA VAL VAL ELY ALA ILE PHE ASP ILE LEU HIS ALA SEQRES 16 A 221 ALA ASP GLU THR PRO PHE HIS ARG THR SER ILE GLY VAL SEQRES 17 A 221 GLY GLU PRO GLY THR HIS TYR ASP LYS PRO SER PHE HIS MODRES 4IPT MSE A 1 MET SELENOMETHIONINE MODRES 4IPT ELY A 17 LYS N~6~,N~6~-DIETHYL-L-LYSINE MODRES 4IPT MSE A 28 MET SELENOMETHIONINE MODRES 4IPT ELY A 38 LYS N~6~,N~6~-DIETHYL-L-LYSINE MODRES 4IPT MSE A 79 MET SELENOMETHIONINE MODRES 4IPT MSE A 85 MET SELENOMETHIONINE MODRES 4IPT MSE A 105 MET SELENOMETHIONINE MODRES 4IPT ELY A 184 LYS N~6~,N~6~-DIETHYL-L-LYSINE HET MSE A 1 8 HET ELY A 17 13 HET MSE A 28 8 HET ELY A 38 21 HET MSE A 79 8 HET MSE A 85 8 HET MSE A 105 8 HET ELY A 184 23 HET GOL A 301 6 HET CL A 302 1 HET CL A 303 1 HET PEG A 304 7 HET FMT A 305 3 HET FMT A 306 3 HET PG4 A 307 13 HETNAM MSE SELENOMETHIONINE HETNAM ELY N~6~,N~6~-DIETHYL-L-LYSINE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM FMT FORMIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN ELY (2S)-2-AZANYL-6-(DIETHYLAMINO)HEXANOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 1 ELY 3(C10 H22 N2 O2) FORMUL 2 GOL C3 H8 O3 FORMUL 3 CL 2(CL 1-) FORMUL 5 PEG C4 H10 O3 FORMUL 6 FMT 2(C H2 O2) FORMUL 8 PG4 C8 H18 O5 FORMUL 9 HOH *130(H2 O) HELIX 1 1 GLY A 12 THR A 26 1 15 HELIX 2 2 GLN A 36 ILE A 41 1 6 HELIX 3 3 PRO A 42 ASP A 47 1 6 HELIX 4 4 ASN A 60 THR A 69 1 10 HELIX 5 5 SER A 81 LYS A 95 1 15 HELIX 6 6 PRO A 113 ASN A 123 1 11 HELIX 7 7 PRO A 125 SER A 142 1 18 HELIX 8 8 ARG A 179 HIS A 191 1 13 HELIX 9 9 GLU A 195 HIS A 199 5 5 SHEET 1 A 8 VAL A 51 GLU A 55 0 SHEET 2 A 8 HIS A 29 GLY A 34 1 N LEU A 32 O THR A 52 SHEET 3 A 8 TYR A 4 LEU A 8 1 N ILE A 7 O THR A 31 SHEET 4 A 8 VAL A 73 VAL A 76 1 O PHE A 75 N LEU A 8 SHEET 5 A 8 ARG A 99 MSE A 105 1 O ILE A 101 N VAL A 76 SHEET 6 A 8 ASN A 145 LEU A 151 1 O LEU A 149 N GLY A 102 SHEET 7 A 8 THR A 201 GLY A 206 1 O ILE A 203 N ILE A 148 SHEET 8 A 8 GLU A 164 ILE A 166 -1 N ILE A 166 O GLY A 204 SHEET 1 B 2 TRP A 153 TYR A 155 0 SHEET 2 B 2 GLN A 176 SER A 178 1 O VAL A 177 N TRP A 153 LINK C MSE A 1 N TYR A 2 1555 1555 1.33 LINK C GLN A 16 N ELY A 17 1555 1555 1.33 LINK C ELY A 17 N LEU A 18 1555 1555 1.33 LINK C ASP A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N HIS A 29 1555 1555 1.33 LINK C LEU A 37 N ELY A 38 1555 1555 1.33 LINK C ELY A 38 N THR A 39 1555 1555 1.33 LINK C ALA A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N GLU A 80 1555 1555 1.33 LINK C ASP A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N ALA A 86 1555 1555 1.33 LINK C SER A 104 N MSE A 105 1555 1555 1.32 LINK C MSE A 105 N ALA A 106 1555 1555 1.33 LINK C VAL A 183 N ELY A 184 1555 1555 1.33 LINK C ELY A 184 N ALA A 185 1555 1555 1.33 SITE 1 AC1 9 MSE A 105 ALA A 106 PHE A 112 LEU A 151 SITE 2 AC1 9 THR A 152 PG4 A 307 HOH A 411 HOH A 414 SITE 3 AC1 9 HOH A 466 SITE 1 AC2 3 GLN A 13 ILE A 14 ARG A 179 SITE 1 AC3 4 GLY A 9 ALA A 10 ALA A 11 HOH A 430 SITE 1 AC4 3 GLY A 62 GLN A 66 HIS A 211 SITE 1 AC5 5 ARG A 94 ARG A 140 TYR A 146 GLU A 168 SITE 2 AC5 5 SER A 202 SITE 1 AC6 1 ELY A 38 SITE 1 AC7 3 ASN A 123 LEU A 124 GOL A 301 CRYST1 51.681 60.758 68.769 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014541 0.00000 HETATM 1 N MSE A 1 16.165 35.714 19.272 1.00 63.73 N ANISOU 1 N MSE A 1 10178 4989 9047 504 -1163 -832 N HETATM 2 CA MSE A 1 16.986 36.300 20.326 1.00 58.72 C ANISOU 2 CA MSE A 1 9481 4485 8344 752 -1220 -601 C HETATM 3 C MSE A 1 18.335 36.785 19.791 1.00 57.72 C ANISOU 3 C MSE A 1 9141 4640 8148 1151 -1213 -810 C HETATM 4 O MSE A 1 18.977 36.110 18.981 1.00 59.70 O ANISOU 4 O MSE A 1 9388 4830 8463 1356 -1182 -1032 O HETATM 5 CB MSE A 1 17.213 35.295 21.458 1.00 59.69 C ANISOU 5 CB MSE A 1 9821 4283 8573 837 -1281 -280 C HETATM 6 CG MSE A 1 17.495 35.951 22.801 1.00 57.34 C ANISOU 6 CG MSE A 1 9477 4166 8141 902 -1343 62 C HETATM 7 SE MSE A 1 15.933 35.875 23.971 0.37 84.20 SE ANISOU 7 SE MSE A 1 13032 7481 11479 372 -1311 471 SE HETATM 8 CE MSE A 1 16.418 37.262 25.243 1.00 62.70 C ANISOU 8 CE MSE A 1 9996 5390 8438 454 -1270 695 C