HEADER OXIDOREDUCTASE 10-JAN-13 4IPW TITLE SUBSTRATE AND REACTION SPECIFICITY OF MYCOBACTERIUM TUBERCULOSIS TITLE 2 CYTOCHROME P450 CYP121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 121; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME P450 MT2; COMPND 5 EC: 1.14.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: CYP121, RV2276, MT2336, MTCY339.34C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P450 FOLD, OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FONVIELLE,M.H.LEDU,O.LEQUIN,A.LECOQ,M.JACQUET,R.THAI,S.DUBOIS, AUTHOR 2 G.GRACH,M.GONDRY,P.BELIN REVDAT 4 28-FEB-24 4IPW 1 REMARK REVDAT 3 03-JUL-13 4IPW 1 JRNL REVDAT 2 08-MAY-13 4IPW 1 JRNL REVDAT 1 01-MAY-13 4IPW 0 JRNL AUTH M.FONVIELLE,M.H.LE DU,O.LEQUIN,A.LECOQ,M.JACQUET,R.THAI, JRNL AUTH 2 S.DUBOIS,G.GRACH,M.GONDRY,P.BELIN JRNL TITL SUBSTRATE AND REACTION SPECIFICITY OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS CYTOCHROME P450 CYP121: INSIGHTS FROM JRNL TITL 3 BIOCHEMICAL STUDIES AND CRYSTAL STRUCTURES. JRNL REF J.BIOL.CHEM. V. 288 17347 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23620594 JRNL DOI 10.1074/JBC.M112.443853 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 86292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4339 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5279 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1821 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5018 REMARK 3 BIN R VALUE (WORKING SET) : 0.1821 REMARK 3 BIN FREE R VALUE : 0.1828 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.94 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 261 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 655 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00450 REMARK 3 B22 (A**2) : 0.00450 REMARK 3 B33 (A**2) : -0.00900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.142 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3281 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4475 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1129 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 84 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 486 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3281 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.90 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 6.2743 21.6375 -11.1677 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: -0.0272 REMARK 3 T33: -0.0081 T12: 0.0066 REMARK 3 T13: 0.0070 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.1555 L22: 0.2191 REMARK 3 L33: 0.2833 L12: -0.0173 REMARK 3 L13: -0.0020 L23: 0.0121 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: 0.0023 S13: 0.0254 REMARK 3 S21: 0.0003 S22: 0.0016 S23: -0.0195 REMARK 3 S31: -0.0923 S32: 0.0115 S33: -0.0166 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86350 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FFT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE 2.2 M, NAMES 0.1 M, REMARK 280 PH 5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.26400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.63200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.44800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.81600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 219.08000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 175.26400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.63200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.81600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 131.44800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 219.08000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -194.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -43.81600 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -186.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 991 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1089 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 41 O HOH A 908 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 251 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 29 73.97 -157.23 REMARK 500 PHE A 137 -76.01 -140.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 72 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 345 SG REMARK 620 2 HEM A 401 NA 100.1 REMARK 620 3 HEM A 401 NB 91.2 89.0 REMARK 620 4 HEM A 401 NC 85.8 174.1 90.4 REMARK 620 5 HEM A 401 ND 102.0 89.6 166.7 89.7 REMARK 620 6 HOH A 501 O 174.5 84.5 85.7 89.6 81.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1G7 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 412 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ICT RELATED DB: PDB REMARK 900 RELATED ID: 4IPS RELATED DB: PDB REMARK 900 RELATED ID: 4IQ7 RELATED DB: PDB REMARK 900 RELATED ID: 4IQ9 RELATED DB: PDB DBREF 4IPW A 2 396 UNP P0A514 CP121_MYCTU 2 396 SEQRES 1 A 395 THR ALA THR VAL LEU LEU GLU VAL PRO PHE SER ALA ARG SEQRES 2 A 395 GLY ASP ARG ILE PRO ASP ALA VAL ALA GLU LEU ARG THR SEQRES 3 A 395 ARG GLU PRO ILE ARG LYS VAL ARG THR ILE THR GLY ALA SEQRES 4 A 395 GLU ALA TRP LEU VAL SER SER TYR ALA LEU CYS THR GLN SEQRES 5 A 395 VAL LEU GLU ASP ARG ARG PHE SER MET LYS GLU THR ALA SEQRES 6 A 395 ALA ALA GLY ALA PRO ARG LEU ASN ALA LEU THR VAL PRO SEQRES 7 A 395 PRO GLU VAL VAL ASN ASN MET GLY ASN ILE ALA ASP ALA SEQRES 8 A 395 GLY LEU ARG LYS ALA VAL MET LYS ALA ILE THR PRO LYS SEQRES 9 A 395 ALA PRO GLY LEU GLU GLN PHE LEU ARG ASP THR ALA ASN SEQRES 10 A 395 SER LEU LEU ASP ASN LEU ILE THR GLU GLY ALA PRO ALA SEQRES 11 A 395 ASP LEU ARG ASN ASP PHE ALA ASP PRO LEU ALA THR ALA SEQRES 12 A 395 LEU HIS CYS LYS VAL LEU GLY ILE PRO GLN GLU ASP GLY SEQRES 13 A 395 PRO LYS LEU PHE ARG SER LEU SER ILE ALA PHE MET SER SEQRES 14 A 395 SER ALA ASP PRO ILE PRO ALA ALA LYS ILE ASN TRP ASP SEQRES 15 A 395 ARG ASP ILE GLU TYR MET ALA GLY ILE LEU GLU ASN PRO SEQRES 16 A 395 ASN ILE THR THR GLY LEU MET GLY GLU LEU SER ARG LEU SEQRES 17 A 395 ARG LYS ASP PRO ALA TYR SER HIS VAL SER ASP GLU LEU SEQRES 18 A 395 PHE ALA THR ILE GLY VAL THR PHE PHE GLY ALA GLY VAL SEQRES 19 A 395 ILE SER THR GLY SER PHE LEU THR THR ALA LEU ILE SER SEQRES 20 A 395 LEU ILE GLN ARG PRO GLN LEU ARG ASN LEU LEU HIS GLU SEQRES 21 A 395 LYS PRO GLU LEU ILE PRO ALA GLY VAL GLU GLU LEU LEU SEQRES 22 A 395 ARG ILE ASN LEU SER PHE ALA ASP GLY LEU PRO ARG LEU SEQRES 23 A 395 ALA THR ALA ASP ILE GLN VAL GLY ASP VAL LEU VAL ARG SEQRES 24 A 395 LYS GLY GLU LEU VAL LEU VAL LEU LEU GLU GLY ALA ASN SEQRES 25 A 395 PHE ASP PRO GLU HIS PHE PRO ASN PRO GLY SER ILE GLU SEQRES 26 A 395 LEU ASP ARG PRO ASN PRO THR SER HIS LEU ALA PHE GLY SEQRES 27 A 395 ARG GLY GLN HIS PHE CYS PRO GLY SER ALA LEU GLY ARG SEQRES 28 A 395 ARG HIS ALA GLN ILE GLY ILE GLU ALA LEU LEU LYS LYS SEQRES 29 A 395 MET PRO GLY VAL ASP LEU ALA VAL PRO ILE ASP GLN LEU SEQRES 30 A 395 VAL TRP ARG THR ARG PHE GLN ARG ARG ILE PRO GLU ARG SEQRES 31 A 395 LEU PRO VAL LEU TRP HET HEM A 401 43 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET 1G7 A 406 25 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HET PO4 A 410 5 HET GOL A 411 6 HET GOL A 412 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM 1G7 (3S,6S)-3-(3,4-DIHYDROXYBENZYL)-6-(4-HYDROXYBENZYL) HETNAM 2 1G7 PIPERAZINE-2,5-DIONE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 1G7 C18 H18 N2 O5 FORMUL 8 GOL 5(C3 H8 O3) FORMUL 11 PO4 O4 P 3- FORMUL 14 HOH *655(H2 O) HELIX 1 1 PRO A 19 GLU A 29 1 11 HELIX 2 2 SER A 47 GLU A 56 1 10 HELIX 3 3 MET A 62 ALA A 67 5 6 HELIX 4 4 PRO A 79 VAL A 83 5 5 HELIX 5 5 ASN A 84 ALA A 92 1 9 HELIX 6 6 LEU A 94 ILE A 102 1 9 HELIX 7 7 GLY A 108 GLY A 128 1 21 HELIX 8 8 PHE A 137 GLY A 151 1 15 HELIX 9 9 PRO A 153 GLU A 155 5 3 HELIX 10 10 ASP A 156 SER A 163 1 8 HELIX 11 11 SER A 163 PHE A 168 1 6 HELIX 12 12 ILE A 175 ASN A 195 1 21 HELIX 13 13 THR A 200 LYS A 211 1 12 HELIX 14 14 ASP A 212 SER A 216 5 5 HELIX 15 15 SER A 219 GLN A 251 1 33 HELIX 16 16 ARG A 252 LYS A 262 1 11 HELIX 17 17 LEU A 265 ILE A 276 1 12 HELIX 18 18 LEU A 308 PHE A 314 1 7 HELIX 19 19 ARG A 340 PHE A 344 5 5 HELIX 20 20 GLY A 347 MET A 366 1 20 HELIX 21 21 PRO A 374 LEU A 378 5 5 SHEET 1 A 5 ILE A 31 ARG A 35 0 SHEET 2 A 5 GLU A 41 VAL A 45 -1 O LEU A 44 N ARG A 32 SHEET 3 A 5 LEU A 304 VAL A 307 1 O LEU A 306 N TRP A 43 SHEET 4 A 5 LEU A 284 ALA A 288 -1 N ARG A 286 O VAL A 305 SHEET 5 A 5 PHE A 60 SER A 61 -1 N SER A 61 O LEU A 287 SHEET 1 B 3 ALA A 131 ASP A 132 0 SHEET 2 B 3 PRO A 393 LEU A 395 -1 O VAL A 394 N ALA A 131 SHEET 3 B 3 ASP A 370 LEU A 371 -1 N ASP A 370 O LEU A 395 SHEET 1 C 2 ILE A 292 VAL A 294 0 SHEET 2 C 2 VAL A 297 VAL A 299 -1 O VAL A 297 N VAL A 294 LINK SG CYS A 345 FE HEM A 401 1555 1555 2.36 LINK FE HEM A 401 O HOH A 501 1555 1555 2.41 CISPEP 1 VAL A 9 PRO A 10 0 -1.35 CISPEP 2 ALA A 129 PRO A 130 0 -0.30 SITE 1 AC1 23 MET A 62 MET A 86 HIS A 146 PHE A 230 SITE 2 AC1 23 GLY A 234 SER A 237 PHE A 241 PHE A 280 SITE 3 AC1 23 LEU A 284 ARG A 286 ALA A 337 PHE A 338 SITE 4 AC1 23 GLY A 339 HIS A 343 CYS A 345 PRO A 346 SITE 5 AC1 23 1G7 A 406 HOH A 501 HOH A 524 HOH A 567 SITE 6 AC1 23 HOH A 613 HOH A 722 HOH A1088 SITE 1 AC2 10 ARG A 58 SER A 61 MET A 62 LYS A 63 SITE 2 AC2 10 HIS A 343 HOH A 784 HOH A 793 HOH A 834 SITE 3 AC2 10 HOH A1082 HOH A1107 SITE 1 AC3 6 SER A 12 ARG A 17 HOH A 672 HOH A 711 SITE 2 AC3 6 HOH A 766 HOH A 890 SITE 1 AC4 4 LEU A 7 ARG A 32 ARG A 300 HOH A 783 SITE 1 AC5 7 ARG A 134 ASN A 135 PHE A 161 ARG A 381 SITE 2 AC5 7 ARG A 391 HOH A 563 HOH A 657 SITE 1 AC6 18 MET A 62 THR A 77 VAL A 78 VAL A 82 SITE 2 AC6 18 VAL A 83 ASN A 85 ALA A 167 PHE A 168 SITE 3 AC6 18 THR A 229 ARG A 386 HEM A 401 HOH A 502 SITE 4 AC6 18 HOH A 540 HOH A 546 HOH A 567 HOH A 623 SITE 5 AC6 18 HOH A 751 HOH A 865 SITE 1 AC7 9 MET A 62 THR A 65 ARG A 72 ASN A 74 SITE 2 AC7 9 LEU A 76 PRO A 285 HOH A 566 HOH A 751 SITE 3 AC7 9 HOH A 972 SITE 1 AC8 8 VAL A 5 GLU A 64 ALA A 67 THR A 289 SITE 2 AC8 8 LYS A 301 HOH A 868 HOH A 889 HOH A1026 SITE 1 AC9 8 VAL A 5 GLU A 8 ALA A 68 GLY A 69 SITE 2 AC9 8 ALA A 70 PRO A 71 GLY A 302 HOH A1026 SITE 1 BC1 9 LYS A 211 PRO A 330 ASN A 331 PRO A 332 SITE 2 BC1 9 THR A 333 SER A 334 HOH A 760 HOH A 761 SITE 3 BC1 9 HOH A 902 SITE 1 BC2 10 GLU A 81 TRP A 182 ILE A 186 GLU A 221 SITE 2 BC2 10 THR A 225 GLN A 254 HOH A 573 HOH A 625 SITE 3 BC2 10 HOH A 626 HOH A 875 SITE 1 BC3 8 ASP A 16 SER A 248 GLN A 251 ARG A 252 SITE 2 BC3 8 ILE A 276 HOH A 560 HOH A 764 HOH A1132 CRYST1 77.772 77.772 262.896 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012858 0.007424 0.000000 0.00000 SCALE2 0.000000 0.014847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003804 0.00000