HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-JAN-13 4IQU TITLE TDT CORE IN COMPLEX WITH INHIBITOR (2Z,5E)-6-[4-(4-FLUOROBENZOYL)-1H- TITLE 2 PYRROL-2-YL]-2-HYDROXY-4-OXOHEXA-2,5-DIENOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA NUCLEOTIDYLEXOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 SYNONYM: TERMINAL ADDITION ENZYME, TERMINAL COMPND 6 DEOXYNUCLEOTIDYLTRANSFERASE, TDT, TERMINAL TRANSFERASE; COMPND 7 EC: 2.7.7.31; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DNTT, TDT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TERMINAL TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.GOUGE,M.DELARUE REVDAT 5 13-MAR-24 4IQU 1 COMPND SOURCE REVDAT 4 20-SEP-23 4IQU 1 REMARK SEQADV LINK REVDAT 3 26-JUL-17 4IQU 1 SOURCE REMARK REVDAT 2 09-OCT-13 4IQU 1 JRNL REVDAT 1 04-SEP-13 4IQU 0 JRNL AUTH R.COSTI,G.CUZZUCOLI CRUCITTI,L.PESCATORI,A.MESSORE, JRNL AUTH 2 L.SCIPIONE,S.TORTORELLA,A.AMOROSO,E.CRESPAN,P.CAMPIGLIA, JRNL AUTH 3 B.MARESCA,A.PORTA,I.GRANATA,E.NOVELLINO,J.GOUGE,M.DELARUE, JRNL AUTH 4 G.MAGA,R.DI SANTO JRNL TITL NEW NUCLEOTIDE-COMPETITIVE NON-NUCLEOSIDE INHIBITORS OF JRNL TITL 2 TERMINAL DEOXYNUCLEOTIDYL TRANSFERASE: DISCOVERY, JRNL TITL 3 CHARACTERIZATION, AND CRYSTAL STRUCTURE IN COMPLEX WITH THE JRNL TITL 4 TARGET. JRNL REF J.MED.CHEM. V. 56 7431 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23968551 JRNL DOI 10.1021/JM4010187 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 950 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2959 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2107 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2813 REMARK 3 BIN R VALUE (WORKING SET) : 0.2068 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2890 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.46430 REMARK 3 B22 (A**2) : 3.91090 REMARK 3 B33 (A**2) : -10.37520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.389 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.230 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.328 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.222 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2973 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4001 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1406 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 85 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 440 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2973 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 373 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3406 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.95 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.95 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|149 - 239} REMARK 3 ORIGIN FOR THE GROUP (A): 27.6425 11.8333 5.5357 REMARK 3 T TENSOR REMARK 3 T11: -0.1522 T22: -0.0262 REMARK 3 T33: -0.0272 T12: 0.0005 REMARK 3 T13: 0.0032 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 4.0050 L22: 3.7105 REMARK 3 L33: 2.2672 L12: 0.5478 REMARK 3 L13: -0.5877 L23: 0.5196 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: 0.3496 S13: 0.2661 REMARK 3 S21: -0.2864 S22: -0.0419 S23: 0.0803 REMARK 3 S31: -0.3180 S32: 0.0026 S33: 0.0565 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|240 - 453} REMARK 3 ORIGIN FOR THE GROUP (A): 11.9018 11.2086 29.8235 REMARK 3 T TENSOR REMARK 3 T11: -0.1341 T22: -0.0862 REMARK 3 T33: 0.0572 T12: -0.0099 REMARK 3 T13: 0.0389 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.7932 L22: 1.6934 REMARK 3 L33: 0.5073 L12: 0.0980 REMARK 3 L13: 0.0923 L23: 0.6048 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.1131 S13: 0.0351 REMARK 3 S21: 0.1434 S22: -0.0344 S23: 0.1448 REMARK 3 S31: 0.0196 S32: -0.1367 S33: 0.0427 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|454 - 510} REMARK 3 ORIGIN FOR THE GROUP (A): 7.2292 -1.3423 8.6159 REMARK 3 T TENSOR REMARK 3 T11: -0.1534 T22: -0.0453 REMARK 3 T33: 0.1463 T12: 0.0116 REMARK 3 T13: -0.0166 T23: -0.0976 REMARK 3 L TENSOR REMARK 3 L11: 5.7337 L22: 0.0000 REMARK 3 L33: 0.8412 L12: -0.1726 REMARK 3 L13: 0.7731 L23: -0.1500 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: 0.3355 S13: -0.3317 REMARK 3 S21: 0.0581 S22: -0.1256 S23: 0.2383 REMARK 3 S31: -0.0301 S32: 0.0638 S33: 0.0730 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.872600 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18521 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.65600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1JMS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 200 MM SODIUM FORMATE, REMARK 280 100 MM MES, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.45650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.24650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.40200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.24650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.45650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.40200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 130 REMARK 465 MET A 131 REMARK 465 SER A 132 REMARK 465 PRO A 133 REMARK 465 SER A 134 REMARK 465 PRO A 135 REMARK 465 VAL A 136 REMARK 465 PRO A 137 REMARK 465 GLY A 138 REMARK 465 SER A 139 REMARK 465 GLN A 140 REMARK 465 ASN A 141 REMARK 465 VAL A 142 REMARK 465 PRO A 143 REMARK 465 ALA A 144 REMARK 465 PRO A 145 REMARK 465 ALA A 146 REMARK 465 VAL A 147 REMARK 465 LYS A 148 REMARK 465 SER A 420 REMARK 465 GLY A 421 REMARK 465 GLN A 422 REMARK 465 GLN A 423 REMARK 465 MET A 511 REMARK 465 GLY A 512 REMARK 465 SER A 513 REMARK 465 SER A 514 REMARK 465 HIS A 515 REMARK 465 HIS A 516 REMARK 465 HIS A 517 REMARK 465 HIS A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 465 SER A 521 REMARK 465 SER A 522 REMARK 465 GLY A 523 REMARK 465 LEU A 524 REMARK 465 VAL A 525 REMARK 465 PRO A 526 REMARK 465 ARG A 527 REMARK 465 GLY A 528 REMARK 465 SER A 529 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LEU A 398 CG CD1 CD2 REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 394 NH1 ARG A 461 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 331 -152.90 -113.51 REMARK 500 ASN A 509 44.87 -83.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 253 O REMARK 620 2 VAL A 255 O 80.4 REMARK 620 3 VAL A 258 O 96.5 88.0 REMARK 620 4 HOH A 781 O 167.2 93.1 94.3 REMARK 620 5 HOH A 921 O 75.8 91.7 172.2 93.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FQ A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IQT RELATED DB: PDB REMARK 900 RELATED ID: 4IQV RELATED DB: PDB REMARK 900 RELATED ID: 4IQW RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN FRAGMENT IS THE CATALYTIC CORE OF THE TDT-S (TDT-SMALL) REMARK 999 ISOFORM (UNP RESIDUES 132-482, 503-530). DBREF 4IQU A 132 482 UNP P09838 TDT_MOUSE 132 482 DBREF 4IQU A 483 510 UNP P09838 TDT_MOUSE 503 530 SEQADV 4IQU HIS A 130 UNP P09838 EXPRESSION TAG SEQADV 4IQU MET A 131 UNP P09838 EXPRESSION TAG SEQADV 4IQU MET A 511 UNP P09838 EXPRESSION TAG SEQADV 4IQU GLY A 512 UNP P09838 EXPRESSION TAG SEQADV 4IQU SER A 513 UNP P09838 EXPRESSION TAG SEQADV 4IQU SER A 514 UNP P09838 EXPRESSION TAG SEQADV 4IQU HIS A 515 UNP P09838 EXPRESSION TAG SEQADV 4IQU HIS A 516 UNP P09838 EXPRESSION TAG SEQADV 4IQU HIS A 517 UNP P09838 EXPRESSION TAG SEQADV 4IQU HIS A 518 UNP P09838 EXPRESSION TAG SEQADV 4IQU HIS A 519 UNP P09838 EXPRESSION TAG SEQADV 4IQU HIS A 520 UNP P09838 EXPRESSION TAG SEQADV 4IQU SER A 521 UNP P09838 EXPRESSION TAG SEQADV 4IQU SER A 522 UNP P09838 EXPRESSION TAG SEQADV 4IQU GLY A 523 UNP P09838 EXPRESSION TAG SEQADV 4IQU LEU A 524 UNP P09838 EXPRESSION TAG SEQADV 4IQU VAL A 525 UNP P09838 EXPRESSION TAG SEQADV 4IQU PRO A 526 UNP P09838 EXPRESSION TAG SEQADV 4IQU ARG A 527 UNP P09838 EXPRESSION TAG SEQADV 4IQU GLY A 528 UNP P09838 EXPRESSION TAG SEQADV 4IQU SER A 529 UNP P09838 EXPRESSION TAG SEQRES 1 A 400 HIS MET SER PRO SER PRO VAL PRO GLY SER GLN ASN VAL SEQRES 2 A 400 PRO ALA PRO ALA VAL LYS LYS ILE SER GLN TYR ALA CYS SEQRES 3 A 400 GLN ARG ARG THR THR LEU ASN ASN TYR ASN GLN LEU PHE SEQRES 4 A 400 THR ASP ALA LEU ASP ILE LEU ALA GLU ASN ASP GLU LEU SEQRES 5 A 400 ARG GLU ASN GLU GLY SER CYS LEU ALA PHE MET ARG ALA SEQRES 6 A 400 SER SER VAL LEU LYS SER LEU PRO PHE PRO ILE THR SER SEQRES 7 A 400 MET LYS ASP THR GLU GLY ILE PRO CYS LEU GLY ASP LYS SEQRES 8 A 400 VAL LYS SER ILE ILE GLU GLY ILE ILE GLU ASP GLY GLU SEQRES 9 A 400 SER SER GLU ALA LYS ALA VAL LEU ASN ASP GLU ARG TYR SEQRES 10 A 400 LYS SER PHE LYS LEU PHE THR SER VAL PHE GLY VAL GLY SEQRES 11 A 400 LEU LYS THR ALA GLU LYS TRP PHE ARG MET GLY PHE ARG SEQRES 12 A 400 THR LEU SER LYS ILE GLN SER ASP LYS SER LEU ARG PHE SEQRES 13 A 400 THR GLN MET GLN LYS ALA GLY PHE LEU TYR TYR GLU ASP SEQRES 14 A 400 LEU VAL SER CYS VAL ASN ARG PRO GLU ALA GLU ALA VAL SEQRES 15 A 400 SER MET LEU VAL LYS GLU ALA VAL VAL THR PHE LEU PRO SEQRES 16 A 400 ASP ALA LEU VAL THR MET THR GLY GLY PHE ARG ARG GLY SEQRES 17 A 400 LYS MET THR GLY HIS ASP VAL ASP PHE LEU ILE THR SER SEQRES 18 A 400 PRO GLU ALA THR GLU ASP GLU GLU GLN GLN LEU LEU HIS SEQRES 19 A 400 LYS VAL THR ASP PHE TRP LYS GLN GLN GLY LEU LEU LEU SEQRES 20 A 400 TYR CYS ASP ILE LEU GLU SER THR PHE GLU LYS PHE LYS SEQRES 21 A 400 GLN PRO SER ARG LYS VAL ASP ALA LEU ASP HIS PHE GLN SEQRES 22 A 400 LYS CYS PHE LEU ILE LEU LYS LEU ASP HIS GLY ARG VAL SEQRES 23 A 400 HIS SER GLU LYS SER GLY GLN GLN GLU GLY LYS GLY TRP SEQRES 24 A 400 LYS ALA ILE ARG VAL ASP LEU VAL MET CYS PRO TYR ASP SEQRES 25 A 400 ARG ARG ALA PHE ALA LEU LEU GLY TRP THR GLY SER ARG SEQRES 26 A 400 GLN PHE GLU ARG ASP LEU ARG ARG TYR ALA THR HIS GLU SEQRES 27 A 400 ARG LYS MET MET LEU ASP ASN HIS ALA LEU TYR ASP ARG SEQRES 28 A 400 THR LYS ARG VAL PHE LEU GLU ALA GLU SER GLU GLU GLU SEQRES 29 A 400 ILE PHE ALA HIS LEU GLY LEU ASP TYR ILE GLU PRO TRP SEQRES 30 A 400 GLU ARG ASN ALA MET GLY SER SER HIS HIS HIS HIS HIS SEQRES 31 A 400 HIS SER SER GLY LEU VAL PRO ARG GLY SER HET NA A 601 1 HET 1FQ A 602 24 HETNAM NA SODIUM ION HETNAM 1FQ (2Z,5E)-6-[4-(4-FLUOROBENZOYL)-1H-PYRROL-2-YL]-2- HETNAM 2 1FQ HYDROXY-4-OXOHEXA-2,5-DIENOIC ACID FORMUL 2 NA NA 1+ FORMUL 3 1FQ C17 H12 F N O5 FORMUL 4 HOH *270(H2 O) HELIX 1 1 TYR A 153 ARG A 157 5 5 HELIX 2 2 ASN A 165 ARG A 182 1 18 HELIX 3 3 ASN A 184 SER A 200 1 17 HELIX 4 4 SER A 207 GLU A 212 5 6 HELIX 5 5 GLY A 218 GLY A 232 1 15 HELIX 6 6 SER A 234 ASP A 243 1 10 HELIX 7 7 ASP A 243 SER A 254 1 12 HELIX 8 8 GLY A 259 MET A 269 1 11 HELIX 9 9 THR A 273 ASP A 280 1 8 HELIX 10 10 THR A 286 TYR A 295 1 10 HELIX 11 11 TYR A 295 SER A 301 1 7 HELIX 12 12 ARG A 305 LEU A 323 1 19 HELIX 13 13 THR A 331 ARG A 336 1 6 HELIX 14 14 THR A 354 GLN A 372 1 19 HELIX 15 15 GLY A 413 VAL A 415 5 3 HELIX 16 16 PRO A 439 ASP A 441 5 3 HELIX 17 17 ARG A 442 GLY A 452 1 11 HELIX 18 18 SER A 453 LYS A 469 1 17 HELIX 19 19 SER A 490 GLY A 499 1 10 HELIX 20 20 GLU A 504 ARG A 508 5 5 SHEET 1 A 2 VAL A 303 ASN A 304 0 SHEET 2 A 2 THR A 340 GLY A 341 -1 O GLY A 341 N VAL A 303 SHEET 1 B 5 LEU A 327 MET A 330 0 SHEET 2 B 5 VAL A 344 THR A 349 -1 O THR A 349 N LEU A 327 SHEET 3 B 5 TRP A 428 MET A 437 1 O VAL A 436 N ILE A 348 SHEET 4 B 5 GLN A 402 ASP A 411 -1 N LEU A 406 O VAL A 433 SHEET 5 B 5 LEU A 375 LEU A 381 -1 N LEU A 381 O LYS A 403 SHEET 1 C 3 MET A 470 LEU A 472 0 SHEET 2 C 3 LEU A 477 ASP A 479 -1 O TYR A 478 N MET A 471 SHEET 3 C 3 VAL A 484 PHE A 485 -1 O VAL A 484 N ASP A 479 LINK O THR A 253 NA NA A 601 1555 1555 2.39 LINK O VAL A 255 NA NA A 601 1555 1555 2.83 LINK O VAL A 258 NA NA A 601 1555 1555 2.71 LINK NA NA A 601 O HOH A 781 1555 1555 2.78 LINK NA NA A 601 O HOH A 921 1555 1555 2.92 CISPEP 1 GLY A 452 SER A 453 0 -3.19 SITE 1 AC1 5 THR A 253 VAL A 255 VAL A 258 HOH A 781 SITE 2 AC1 5 HOH A 921 SITE 1 AC2 12 GLY A 332 ARG A 336 ASP A 399 TRP A 450 SITE 2 AC2 12 SER A 453 ARG A 454 GLN A 455 ASN A 474 SITE 3 AC2 12 ALA A 510 HOH A 733 HOH A 739 HOH A 890 CRYST1 46.913 84.804 114.493 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021316 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008734 0.00000