HEADER CHAPERONE 14-JAN-13 4IRF TITLE PRELIMINARY STRUCTURAL INVESTIGATIONS OF A MALARIAL PROTEIN SECRETION TITLE 2 SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALARIAL CLPB2 ATPASE/HSP101 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PF11_0175, PF3D7_1116800; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF KEYWDS MALARIA, AAA+ ATPASE CLPB CHAPERONE, N-TERMINAL CARGO-BINDING DOMAIN, KEYWDS 2 PROTEIN TRANSLOCATION AND UNFOLDING, PARASITOPHOROUS VACUOLE, KEYWDS 3 CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR P.F.EGEA REVDAT 4 20-SEP-23 4IRF 1 SEQADV REVDAT 3 16-DEC-15 4IRF 1 JRNL REVDAT 2 29-JUL-15 4IRF 1 JRNL REVDAT 1 16-APR-14 4IRF 0 JRNL AUTH A.P.AHYOUNG,A.KOEHL,D.CASCIO,P.F.EGEA JRNL TITL STRUCTURAL MAPPING OF THE CLPB ATPASES OF PLASMODIUM JRNL TITL 2 FALCIPARUM: TARGETING PROTEIN FOLDING AND SECRETION FOR JRNL TITL 3 ANTIMALARIAL DRUG DESIGN. JRNL REF PROTEIN SCI. V. 24 1508 2015 JRNL REFN ISSN 0961-8368 JRNL PMID 26130467 JRNL DOI 10.1002/PRO.2739 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 35142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.8305 - 4.8104 0.98 1395 157 0.2315 0.2151 REMARK 3 2 4.8104 - 3.8183 1.00 1331 148 0.1781 0.1915 REMARK 3 3 3.8183 - 3.3356 0.97 1281 141 0.1851 0.1855 REMARK 3 4 3.3356 - 3.0307 1.00 1301 145 0.2069 0.2182 REMARK 3 5 3.0307 - 2.8134 1.00 1293 144 0.2191 0.2566 REMARK 3 6 2.8134 - 2.6476 1.00 1254 139 0.2217 0.2490 REMARK 3 7 2.6476 - 2.5150 1.00 1304 143 0.2101 0.2670 REMARK 3 8 2.5150 - 2.4055 1.00 1276 142 0.2077 0.2283 REMARK 3 9 2.4055 - 2.3129 0.98 1233 137 0.2157 0.2639 REMARK 3 10 2.3129 - 2.2330 0.99 1277 140 0.2169 0.2660 REMARK 3 11 2.2330 - 2.1632 1.00 1267 141 0.2231 0.2684 REMARK 3 12 2.1632 - 2.1014 1.00 1258 140 0.2233 0.2634 REMARK 3 13 2.1014 - 2.0461 1.00 1273 142 0.2400 0.2608 REMARK 3 14 2.0461 - 1.9961 1.00 1237 137 0.2369 0.2763 REMARK 3 15 1.9961 - 1.9508 0.99 1291 143 0.2451 0.2678 REMARK 3 16 1.9508 - 1.9092 1.00 1241 138 0.2537 0.2761 REMARK 3 17 1.9092 - 1.8710 0.99 1242 137 0.2516 0.3309 REMARK 3 18 1.8710 - 1.8357 0.98 1254 140 0.2566 0.3124 REMARK 3 19 1.8357 - 1.8029 0.99 1244 138 0.2612 0.2899 REMARK 3 20 1.8029 - 1.7724 1.00 1237 138 0.2396 0.2799 REMARK 3 21 1.7724 - 1.7438 0.99 1258 140 0.2469 0.3287 REMARK 3 22 1.7438 - 1.7170 1.00 1265 140 0.2521 0.3215 REMARK 3 23 1.7170 - 1.6917 1.00 1246 139 0.2579 0.2912 REMARK 3 24 1.6917 - 1.6679 0.98 1221 136 0.2581 0.3144 REMARK 3 25 1.6679 - 1.6450 0.92 1150 128 0.2722 0.3035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2280 REMARK 3 ANGLE : 1.904 3085 REMARK 3 CHIRALITY : 0.097 364 REMARK 3 PLANARITY : 0.008 398 REMARK 3 DIHEDRAL : 14.689 852 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 0.4419 -7.8061 23.0319 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.2098 REMARK 3 T33: 0.2619 T12: -0.0210 REMARK 3 T13: -0.1276 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 2.3930 L22: 3.1599 REMARK 3 L33: 2.0133 L12: -0.5712 REMARK 3 L13: -0.0680 L23: -0.3056 REMARK 3 S TENSOR REMARK 3 S11: -0.0873 S12: 0.0779 S13: 0.3352 REMARK 3 S21: -0.1682 S22: 0.0780 S23: 0.2274 REMARK 3 S31: 0.0886 S32: -0.0514 S33: 0.0421 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -3.3601 -25.2103 44.3974 REMARK 3 T TENSOR REMARK 3 T11: 0.3232 T22: 0.3000 REMARK 3 T33: 0.1735 T12: 0.0085 REMARK 3 T13: -0.0280 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 2.0577 L22: 5.0859 REMARK 3 L33: 3.3538 L12: -0.8124 REMARK 3 L13: -0.2204 L23: -0.3680 REMARK 3 S TENSOR REMARK 3 S11: -0.0415 S12: -0.2922 S13: -0.0930 REMARK 3 S21: 0.5012 S22: 0.2455 S23: 0.3743 REMARK 3 S31: -0.2169 S32: -0.3184 S33: -0.2093 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(111) SIDE BOUNCE REMARK 200 MONOCHROMATOR. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35144 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.645 REMARK 200 RESOLUTION RANGE LOW (A) : 66.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : 0.47800 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4IOD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 20%, 0.1M CAPSO PH 9.4, 10% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.49000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.49000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 VAL A 154 REMARK 465 PRO A 155 REMARK 465 ARG A 156 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 465 ASN B 5 REMARK 465 LYS B 6 REMARK 465 GLN B 7 REMARK 465 GLU B 8 REMARK 465 LEU B 153 REMARK 465 VAL B 154 REMARK 465 PRO B 155 REMARK 465 ARG B 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 THR B 152 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 60 ND2 ASN A 63 1.80 REMARK 500 O HOH A 241 O HOH A 247 1.85 REMARK 500 O HOH B 284 O HOH B 286 1.90 REMARK 500 NZ LYS B 46 O HOH B 243 1.96 REMARK 500 NE ARG A 147 O HOH A 296 1.97 REMARK 500 O LYS A 86 O HOH A 293 2.05 REMARK 500 O HOH A 271 O HOH A 274 2.06 REMARK 500 O HOH B 211 O HOH B 261 2.06 REMARK 500 NZ LYS B 146 OE2 GLU B 150 2.12 REMARK 500 O HOH B 235 O HOH B 256 2.17 REMARK 500 O HOH A 239 O HOH A 260 2.19 REMARK 500 O HOH A 257 O HOH A 259 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 73 NZ LYS A 108 3555 1.77 REMARK 500 O HOH A 248 O HOH A 268 1455 1.89 REMARK 500 O HOH A 281 O HOH A 287 1455 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 57 CA - C - N ANGL. DEV. = -30.3 DEGREES REMARK 500 ASN A 57 O - C - N ANGL. DEV. = 29.7 DEGREES REMARK 500 ASN A 58 C - N - CA ANGL. DEV. = -24.6 DEGREES REMARK 500 ASN A 58 CA - C - N ANGL. DEV. = 14.2 DEGREES REMARK 500 ASN A 58 O - C - N ANGL. DEV. = -17.2 DEGREES REMARK 500 VAL A 59 C - N - CA ANGL. DEV. = 23.1 DEGREES REMARK 500 ASN A 105 CA - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 ILE A 141 CA - C - O ANGL. DEV. = 13.0 DEGREES REMARK 500 ILE A 141 CA - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 LYS B 142 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 83 27.17 -69.36 REMARK 500 ASN B 83 26.27 -69.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 151 THR B 152 128.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 58 -10.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IOD RELATED DB: PDB DBREF 4IRF A 2 152 UNP Q8IIJ8 Q8IIJ8_PLAF7 27 177 DBREF 4IRF B 2 152 UNP Q8IIJ8 Q8IIJ8_PLAF7 27 177 SEQADV 4IRF MET A 1 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IRF LEU A 153 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IRF VAL A 154 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IRF PRO A 155 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IRF ARG A 156 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IRF MET B 1 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IRF LEU B 153 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IRF VAL B 154 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IRF PRO B 155 UNP Q8IIJ8 EXPRESSION TAG SEQADV 4IRF ARG B 156 UNP Q8IIJ8 EXPRESSION TAG SEQRES 1 A 156 MET ALA PRO ASP ASN LYS GLN GLU GLN GLY LYS TYR LEU SEQRES 2 A 156 ASN ARG THR ILE ASN ILE LEU ASN ALA GLY LYS ASN ILE SEQRES 3 A 156 ALA LYS SER TYR GLY HIS ASN LYS LEU LYS PRO ILE HIS SEQRES 4 A 156 ILE LEU SER ALA LEU ALA LYS SER ASP TYR GLY SER THR SEQRES 5 A 156 LEU PHE LYS GLU ASN ASN VAL ASN ALA ALA ASN LEU LYS SEQRES 6 A 156 GLU TYR ILE ASP ILE ALA LEU GLU GLN THR ARG ALA GLY SEQRES 7 A 156 ALA PRO LEU ASP ASN LYS SER LYS ILE VAL ASN SER ALA SEQRES 8 A 156 GLU VAL LYS GLU THR LEU ALA LEU ALA GLU ALA ALA ALA SEQRES 9 A 156 ASN LYS TYR LYS SER PRO LYS VAL ASP VAL GLU HIS LEU SEQRES 10 A 156 LEU SER GLY LEU SER ASN ASP GLU LEU VAL ASN GLU ILE SEQRES 11 A 156 PHE ASN GLU VAL TYR LEU THR ASP GLU ALA ILE LYS ALA SEQRES 12 A 156 ILE LEU LYS ARG LYS PHE GLU LYS THR LEU VAL PRO ARG SEQRES 1 B 156 MET ALA PRO ASP ASN LYS GLN GLU GLN GLY LYS TYR LEU SEQRES 2 B 156 ASN ARG THR ILE ASN ILE LEU ASN ALA GLY LYS ASN ILE SEQRES 3 B 156 ALA LYS SER TYR GLY HIS ASN LYS LEU LYS PRO ILE HIS SEQRES 4 B 156 ILE LEU SER ALA LEU ALA LYS SER ASP TYR GLY SER THR SEQRES 5 B 156 LEU PHE LYS GLU ASN ASN VAL ASN ALA ALA ASN LEU LYS SEQRES 6 B 156 GLU TYR ILE ASP ILE ALA LEU GLU GLN THR ARG ALA GLY SEQRES 7 B 156 ALA PRO LEU ASP ASN LYS SER LYS ILE VAL ASN SER ALA SEQRES 8 B 156 GLU VAL LYS GLU THR LEU ALA LEU ALA GLU ALA ALA ALA SEQRES 9 B 156 ASN LYS TYR LYS SER PRO LYS VAL ASP VAL GLU HIS LEU SEQRES 10 B 156 LEU SER GLY LEU SER ASN ASP GLU LEU VAL ASN GLU ILE SEQRES 11 B 156 PHE ASN GLU VAL TYR LEU THR ASP GLU ALA ILE LYS ALA SEQRES 12 B 156 ILE LEU LYS ARG LYS PHE GLU LYS THR LEU VAL PRO ARG FORMUL 3 HOH *223(H2 O) HELIX 1 1 LEU A 13 TYR A 30 1 18 HELIX 2 2 LYS A 36 SER A 47 1 12 HELIX 3 3 SER A 47 ASN A 57 1 11 HELIX 4 4 ASN A 60 THR A 75 1 16 HELIX 5 5 SER A 90 TYR A 107 1 18 HELIX 6 6 ASP A 113 SER A 122 1 10 HELIX 7 7 ASP A 124 VAL A 134 1 11 HELIX 8 8 THR A 137 THR A 152 1 16 HELIX 9 9 LEU B 13 TYR B 30 1 18 HELIX 10 10 LYS B 36 SER B 47 1 12 HELIX 11 11 SER B 47 ASN B 57 1 11 HELIX 12 12 ASN B 60 THR B 75 1 16 HELIX 13 13 SER B 90 TYR B 107 1 18 HELIX 14 14 ASP B 113 SER B 122 1 10 HELIX 15 15 ASP B 124 VAL B 134 1 11 HELIX 16 16 THR B 137 LYS B 151 1 15 SHEET 1 A 2 LYS A 34 LEU A 35 0 SHEET 2 A 2 VAL A 88 ASN A 89 1 O VAL A 88 N LEU A 35 SHEET 1 B 2 LYS B 34 LEU B 35 0 SHEET 2 B 2 VAL B 88 ASN B 89 1 O VAL B 88 N LEU B 35 CRYST1 31.780 92.080 96.980 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031466 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010311 0.00000